Experiment set5IT092 for Pseudomonas simiae WCS417

Compare to:

Sodium nitrate nitrogen source

200 most important genes:

  gene name fitness t score description  
PS417_01575 -9.2 -5.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_18600 -7.5 -5.0 isopropylmalate isomerase compare
PS417_04415 -6.9 -8.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_00185 -6.6 -4.6 tryptophan synthase subunit beta compare
PS417_25720 -6.5 -9.2 anthranilate synthase component II compare
PS417_23800 -6.3 -12.1 ketol-acid reductoisomerase compare
PS417_02005 -6.3 -12.8 glutamate synthase compare
PS417_26740 -6.3 -10.1 homoserine acetyltransferase compare
PS417_18595 -6.3 -4.9 3-isopropylmalate dehydratase compare
PS417_23805 -6.0 -7.1 acetolactate synthase 3 regulatory subunit compare
PS417_18585 -5.8 -6.9 3-isopropylmalate dehydrogenase compare
PS417_01855 -5.7 -2.9 phosphoribosyl-AMP cyclohydrolase compare
PS417_24745 -5.7 -3.9 gamma-glutamyl phosphate reductase compare
PS417_18560 -5.6 -7.8 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_01565 -5.5 -3.5 imidazole glycerol phosphate synthase compare
PS417_23545 -5.5 -6.5 gamma-glutamyl kinase compare
PS417_01635 -5.5 -10.0 nitrogen regulation protein NR(I) compare
PS417_01850 -5.4 -9.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_01640 -5.4 -6.4 histidine kinase compare
PS417_27040 -5.3 -5.9 3-phosphoglycerate dehydrogenase compare
PS417_27835 -5.1 -11.4 endoribonuclease compare
PS417_25725 -5.1 -17.8 anthranilate synthase component I compare
PS417_02000 -5.1 -14.0 glutamate synthase compare
PS417_20125 -5.1 -5.5 phosphoribosylglycinamide formyltransferase compare
PS417_12290 -5.0 -11.1 sulfite reductase compare
PS417_27795 -4.9 -1.9 orotate phosphoribosyltransferase compare
PS417_26745 -4.9 -4.7 methionine biosynthesis protein MetW compare
PS417_00180 -4.6 -4.5 tryptophan synthase subunit alpha compare
PS417_04420 -4.6 -12.3 histidinol dehydrogenase compare
PS417_28220 -4.6 -4.4 LysR family transcriptional regulator compare
PS417_08665 -4.5 -6.2 molybdopterin-guanine dinucleotide biosynthesis protein A conserved
PS417_08670 -4.5 -6.0 molybdopterin biosynthesis protein B compare
PS417_22690 -4.5 -5.5 phosphogluconate dehydratase compare
PS417_14730 -4.5 -12.0 Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data) conserved
PS417_18530 -4.5 -6.5 O-succinylhomoserine sulfhydrylase compare
PS417_02510 -4.4 -3.2 ATP phosphoribosyltransferase regulatory subunit compare
PS417_25715 -4.4 -5.9 anthranilate phosphoribosyltransferase compare
PS417_12855 -4.3 -7.6 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_23810 -4.3 -9.9 acetolactate synthase 3 catalytic subunit compare
PS417_23995 -4.2 -1.6 preprotein translocase subunit SecG compare
PS417_14725 -4.1 -7.4 Nitrite reductase (NAD(P)H) (EC 1.7.1.4) (from data) conserved
PS417_06200 -4.1 -7.1 protein-PII uridylyltransferase compare
PS417_01570 -4.1 -2.3 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_05595 -4.0 -7.6 ornithine carbamoyltransferase compare
PS417_21395 -3.9 -12.0 radical SAM protein conserved
PS417_14735 -3.9 -9.6 Nitrate reductase (EC 1.7.99.4) (from data) conserved
PS417_06375 -3.8 -2.1 deoxycytidine triphosphate deaminase compare
PS417_16465 -3.8 -7.4 sirohydrochlorin ferrochelatase compare
PS417_08125 -3.8 -2.5 prephenate dehydratase compare
PS417_20965 -3.8 -6.7 histidine kinase conserved
PS417_27195 -3.7 -1.8 N-acetylglutamate synthase compare
PS417_03310 -3.6 -8.0 carbonate dehydratase compare
PS417_01580 -3.6 -1.7 imidazole glycerol phosphate synthase compare
PS417_04865 -3.6 -5.6 molybdenum cofactor biosynthesis protein MoaC compare
PS417_26000 -3.5 -10.3 8-amino-7-oxononanoate synthase compare
PS417_02415 -3.3 -5.4 phosphoserine phosphatase compare
PS417_26890 -3.3 -4.9 dihydroxy-acid dehydratase compare
PS417_26995 -3.2 -11.2 phosphoserine phosphatase compare
PS417_23110 -3.1 -5.7 2-isopropylmalate synthase compare
PS417_12555 -3.1 -10.2 phosphogluconate 2-dehydrogenase KguD (EC 1.1.1.43) (from data) compare
PS417_20970 -3.0 -15.3 MFS transporter conserved
PS417_26985 -2.8 -4.9 phosphoenolpyruvate-protein phosphotransferase compare
PS417_26005 -2.8 -10.5 biotin synthase compare
PS417_21035 -2.5 -11.6 multidrug transporter compare
PS417_20160 -2.5 -3.3 cysteine synthase compare
PS417_25710 -2.5 -2.4 indole-3-glycerol-phosphate synthase compare
PS417_04875 -2.5 -2.2 molybdenum cofactor biosynthesis protein MoaE compare
PS417_24155 -2.4 -3.6 ATP-binding protein compare
PS417_23770 -2.4 -3.9 exodeoxyribonuclease V subunit alpha compare
PS417_26540 -2.4 -11.1 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PS417_25985 -2.3 -3.4 dethiobiotin synthetase compare
PS417_20985 -2.3 -3.9 porin compare
PS417_21125 -2.3 -10.0 phosphoadenosine phosphosulfate reductase compare
PS417_01560 -2.3 -4.4 imidazoleglycerol-phosphate dehydratase compare
PS417_26730 -2.2 -1.6 pyrroline-5-carboxylate reductase compare
PS417_03925 -2.2 -6.8 nicotinate-nucleotide pyrophosphorylase compare
PS417_07170 -2.1 -3.8 hypothetical protein compare
PS417_20980 -2.1 -8.0 uroporphyrin-III methyltransferase conserved
PS417_01605 -2.1 -2.2 phosphoglycerate mutase compare
PS417_20960 -2.1 -5.2 Nitrate-binding regulatory protein (nasS) (from data) conserved
PS417_08205 -2.1 -4.6 acetyltransferase compare
PS417_08220 -2.1 -1.7 epimerase compare
PS417_08245 -2.0 -1.7 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_08675 -2.0 -8.2 molybdenum cofactor biosynthesis protein MoaA conserved
PS417_02555 -2.0 -14.9 exoribonuclease R compare
PS417_27435 -1.9 -8.5 polyphosphate kinase compare
PS417_22385 -1.8 -9.7 quinolinate synthase A compare
PS417_06645 -1.8 -9.3 RNA polymerase-associated protein RapA compare
PS417_21705 -1.8 -5.7 arginine N-succinyltransferase compare
PS417_08230 -1.8 -2.3 lipopolysaccharide biosynthesis protein RfbH compare
PS417_22520 -1.8 -4.2 histidine kinase compare
PS417_25990 -1.8 -5.6 malonyl-CoA O-methyltransferase compare
PS417_27010 -1.7 -9.0 threonine dehydratase compare
PS417_24835 -1.7 -6.2 hypothetical protein compare
PS417_04270 -1.7 -11.3 ribonuclease G compare
PS417_24585 -1.7 -11.2 AMP nucleosidase compare
PS417_22620 -1.5 -3.8 pyruvate kinase compare
PS417_08195 -1.5 -8.4 hypothetical protein compare
PS417_20610 -1.5 -2.1 hypothetical protein compare
PS417_21700 -1.5 -5.3 arginine N-succinyltransferase compare
PS417_07115 -1.4 -9.1 L-aspartate oxidase compare
PS417_08225 -1.4 -3.3 acetolactate synthase compare
PS417_18690 -1.4 -2.9 aromatic amino acid aminotransferase compare
PS417_27615 -1.4 -7.0 ammonia channel protein conserved
PS417_08200 -1.3 -4.3 hypothetical protein compare
PS417_20975 -1.3 -8.7 protein kinase compare
PS417_01710 -1.3 -6.0 histidine utilization repressor compare
PS417_08155 -1.2 -2.3 integration host factor subunit beta compare
PS417_22695 -1.2 -5.1 glyceraldehyde-3-phosphate dehydrogenase compare
PS417_23380 -1.2 -3.0 cytochrome o ubiquinol oxidase subunit III compare
PS417_23900 -1.2 -6.9 poly(A) polymerase compare
PS417_06680 -1.2 -7.8 nuclease PIN compare
PS417_13800 -1.2 -2.8 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_23775 -1.1 -2.1 exodeoxyribonuclease V subunit beta compare
PS417_27940 -1.1 -2.3 type VI secretion protein compare
PS417_15285 -1.1 -1.4 type VI secretion protein compare
PS417_04410 -1.1 -1.3 hypothetical protein compare
PS417_21980 -1.1 -5.5 permease DsdX compare
PS417_26815 -1.1 -2.5 peptidase M16 compare
PS417_18445 -1.1 -3.4 glycerol-3-phosphatase compare
PS417_01950 -1.1 -4.9 malate dehydrogenase compare
PS417_26695 -1.0 -0.8 uracil phosphoribosyltransferase compare
PS417_00295 -1.0 -4.5 hypothetical protein compare
PS417_26850 -1.0 -1.0 twin-arginine translocation pathway signal protein compare
PS417_00355 -1.0 -3.4 metal ABC transporter permease compare
PS417_16005 -1.0 -3.0 ATPase compare
PS417_27290 -1.0 -2.2 hypothetical protein compare
PS417_05820 -1.0 -3.0 recombinase RecX compare
PS417_07595 -1.0 -4.0 PasA protein compare
PS417_08685 -0.9 -1.8 flagellar hook-length control protein FliK compare
PS417_08580 -0.9 -4.9 histidine kinase compare
PS417_14515 -0.9 -2.0 acetylglucosaminylphosphatidylinositol deacetylase compare
PS417_18590 -0.9 -1.5 SAM-dependent methyltransferase compare
PS417_21655 -0.9 -1.5 aspartate kinase compare
PS417_17610 -0.9 -1.3 AsnC family transcriptional regulator compare
PS417_20665 -0.9 -3.7 hypothetical protein compare
PS417_16715 -0.9 -1.3 DoxX family protein compare
PS417_07165 -0.9 -2.3 dihydrodipicolinate synthase compare
PS417_22840 -0.9 -2.1 tRNA-Met compare
PS417_21630 -0.9 -2.7 magnesium transporter compare
PS417_16490 -0.9 -2.0 cell division protein FtsK compare
PS417_22445 -0.9 -2.3 ATP-dependent DNA helicase RuvB compare
PS417_12565 -0.9 -1.6 2-dehydro-3-deoxygluconokinase compare
PS417_07885 -0.9 -2.8 hypothetical protein compare
PS417_15400 -0.8 -1.9 hypothetical protein compare
PS417_05160 -0.8 -1.2 DNA polymerase III subunit chi compare
PS417_01965 -0.8 -1.2 fimbriae biosynthesis protein compare
PS417_20310 -0.8 -2.1 hypothetical protein compare
PS417_12325 -0.8 -2.4 precorrin-4 C11-methyltransferase compare
PS417_06100 -0.8 -1.9 SAM-dependent methyltransferase compare
PS417_17240 -0.8 -3.6 trigger factor compare
PS417_10985 -0.8 -1.0 NADH:flavin oxidoreductase compare
PS417_28080 -0.8 -5.2 phosphate ABC transporter permease compare
PS417_09420 -0.8 -1.8 LysR family transcriptional regulator compare
PS417_06530 -0.8 -2.6 membrane protein compare
PS417_22685 -0.8 -5.0 Glucokinase (EC 2.7.1.2) (from data) compare
PS417_23375 -0.8 -1.6 cytochrome C oxidase compare
PS417_08250 -0.8 -1.8 competence protein ComEA compare
PS417_05455 -0.8 -3.8 XRE family transcriptional regulator compare
PS417_07845 -0.7 -1.5 transcriptional regulator compare
PS417_19600 -0.7 -0.8 exonuclease compare
PS417_05570 -0.7 -2.5 DeoR faimly transcriptional regulator compare
PS417_18440 -0.7 -4.3 hypothetical protein compare
PS417_18425 -0.7 -0.9 sporulation protein compare
PS417_13075 -0.7 -1.8 hypothetical protein compare
PS417_19955 -0.7 -1.6 hypothetical protein compare
PS417_28200 -0.7 -2.5 hypothetical protein compare
PS417_27035 -0.7 -3.2 FAD-linked oxidase compare
PS417_14590 -0.7 -1.8 LysR family transcriptional regulator compare
PS417_11430 -0.7 -4.3 EamA compare
PS417_14075 -0.7 -1.4 hypothetical protein compare
PS417_02915 -0.7 -3.0 precorrin-3B C17-methyltransferase compare
PS417_18020 -0.7 -1.6 hypothetical protein compare
PS417_11400 -0.7 -1.2 phosphoglycerate mutase compare
PS417_01735 -0.7 -2.4 ABC transporter permease compare
PS417_08990 -0.7 -2.3 ABC transporter substrate-binding protein compare
PS417_15455 -0.7 -3.3 ABC transporter substrate-binding protein compare
PS417_19190 -0.7 -1.8 BolA family transcriptional regulator compare
PS417_16195 -0.7 -0.8 AraC family transcriptional regulator compare
PS417_17120 -0.7 -2.1 protein kinase compare
PS417_23650 -0.7 -2.6 Kynureninase (EC 3.7.1.3) (from data) compare
PS417_18420 -0.7 -1.6 deoxyribonuclease compare
PS417_05850 -0.7 -1.6 LysR family transcriptional regulator compare
PS417_12660 -0.7 -1.5 hypothetical protein compare
PS417_00390 -0.7 -2.9 ABC transporter substrate-binding protein compare
PS417_27770 -0.7 -1.4 hypothetical protein compare
PS417_28295 -0.7 -1.7 glutamine synthetase compare
PS417_26175 -0.6 -0.9 sarcosine oxidase subunit gamma compare
PS417_01135 -0.6 -1.6 taurine dioxygenase compare
PS417_22130 -0.6 -2.7 glucose/xylose ABC transporter, ATPase component (from data) compare
PS417_00660 -0.6 -2.3 DSBA oxidoreductase compare
PS417_12310 -0.6 -3.7 methionine synthase compare
PS417_09505 -0.6 -1.6 hypothetical protein compare
PS417_27305 -0.6 -2.4 5-formyltetrahydrofolate cyclo-ligase compare
PS417_22140 -0.6 -4.9 glucose/xylose ABC transporter, permease component 2 (from data) compare
PS417_10675 -0.6 -0.8 TetR family transcriptional regulator compare
PS417_11925 -0.6 -1.1 hypothetical protein compare
PS417_28070 -0.6 -3.0 phosphate ABC transporter ATP-binding protein compare
PS417_15705 -0.6 -1.3 nitrate reductase compare
PS417_26990 -0.6 -0.9 RNA pyrophosphohydrolase compare


Specific Phenotypes

For 16 genes in this experiment

For nitrogen source Sodium nitrate in Pseudomonas simiae WCS417

For nitrogen source Sodium nitrate across organisms