Experiment set5IT090 for Pseudomonas simiae WCS417

Compare to:

Cytosine nitrogen source

200 most important genes:

  gene name fitness t score description  
PS417_18600 -7.4 -4.9 isopropylmalate isomerase compare
PS417_23805 -7.4 -5.1 acetolactate synthase 3 regulatory subunit compare
PS417_18595 -6.7 -6.5 3-isopropylmalate dehydratase compare
PS417_01635 -6.7 -6.6 nitrogen regulation protein NR(I) compare
PS417_27040 -6.5 -3.7 3-phosphoglycerate dehydrogenase compare
PS417_01640 -6.3 -4.3 histidine kinase compare
PS417_18560 -6.2 -9.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_02005 -5.9 -13.2 glutamate synthase compare
PS417_25720 -5.7 -8.3 anthranilate synthase component II compare
PS417_23800 -5.7 -13.2 ketol-acid reductoisomerase compare
PS417_00185 -5.7 -5.5 tryptophan synthase subunit beta compare
PS417_23545 -5.5 -6.5 gamma-glutamyl kinase compare
PS417_18585 -5.4 -7.4 3-isopropylmalate dehydrogenase compare
PS417_25725 -5.3 -19.8 anthranilate synthase component I compare
PS417_04420 -5.3 -12.8 histidinol dehydrogenase compare
PS417_04415 -5.2 -11.6 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_23810 -5.2 -13.2 acetolactate synthase 3 catalytic subunit compare
PS417_26740 -5.1 -11.9 homoserine acetyltransferase compare
PS417_26745 -4.9 -5.9 methionine biosynthesis protein MetW compare
PS417_06200 -4.8 -9.1 protein-PII uridylyltransferase compare
PS417_02000 -4.8 -14.7 glutamate synthase compare
PS417_02510 -4.8 -7.0 ATP phosphoribosyltransferase regulatory subunit compare
PS417_25715 -4.7 -6.6 anthranilate phosphoribosyltransferase compare
PS417_01575 -4.5 -5.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_18530 -4.4 -6.8 O-succinylhomoserine sulfhydrylase compare
PS417_01565 -4.4 -3.3 imidazole glycerol phosphate synthase compare
PS417_24745 -4.3 -7.2 gamma-glutamyl phosphate reductase compare
PS417_23995 -4.2 -1.6 preprotein translocase subunit SecG compare
PS417_01855 -4.1 -5.9 phosphoribosyl-AMP cyclohydrolase compare
PS417_01605 -3.9 -3.5 phosphoglycerate mutase compare
PS417_12290 -3.8 -10.9 sulfite reductase compare
PS417_01850 -3.8 -7.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_00180 -3.6 -4.2 tryptophan synthase subunit alpha compare
PS417_27195 -3.6 -1.8 N-acetylglutamate synthase compare
PS417_05595 -3.5 -7.3 ornithine carbamoyltransferase compare
PS417_17330 -3.5 -6.9 Dihydropyrimidine dehydrogenase (NADP(+)) (EC 1.3.1.2) (from data) conserved
PS417_21035 -3.5 -13.0 multidrug transporter compare
PS417_12855 -3.3 -5.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_08125 -3.3 -2.5 prephenate dehydratase compare
PS417_23110 -3.2 -6.1 2-isopropylmalate synthase compare
PS417_26890 -3.2 -4.7 dihydroxy-acid dehydratase compare
PS417_27835 -3.1 -6.8 endoribonuclease compare
PS417_24155 -3.1 -3.6 ATP-binding protein compare
PS417_22690 -3.0 -7.6 phosphogluconate dehydratase compare
PS417_16465 -3.0 -7.6 sirohydrochlorin ferrochelatase compare
PS417_02415 -2.9 -4.5 phosphoserine phosphatase compare
PS417_26730 -2.9 -1.6 pyrroline-5-carboxylate reductase compare
PS417_26995 -2.9 -11.2 phosphoserine phosphatase compare
PS417_21125 -2.8 -11.8 phosphoadenosine phosphosulfate reductase compare
PS417_25710 -2.8 -2.5 indole-3-glycerol-phosphate synthase compare
PS417_17325 -2.7 -9.1 dihydropyrimidine dehydrogenase conserved
PS417_17320 -2.5 -4.3 phenylhydantoinase compare
PS417_20125 -2.5 -4.7 phosphoribosylglycinamide formyltransferase compare
PS417_03925 -2.3 -12.0 nicotinate-nucleotide pyrophosphorylase compare
PS417_16005 -2.3 -2.8 ATPase compare
PS417_27010 -2.2 -9.9 threonine dehydratase compare
PS417_20160 -2.1 -3.3 cysteine synthase compare
PS417_22385 -2.1 -9.6 quinolinate synthase A compare
PS417_09800 -2.0 -6.0 cytosine deaminase conserved
PS417_26985 -1.9 -7.5 phosphoenolpyruvate-protein phosphotransferase compare
PS417_28220 -1.9 -2.3 LysR family transcriptional regulator compare
PS417_23770 -1.8 -3.4 exodeoxyribonuclease V subunit alpha compare
PS417_27705 -1.8 -2.3 amino acid dehydrogenase compare
PS417_23775 -1.8 -3.0 exodeoxyribonuclease V subunit beta compare
PS417_01710 -1.7 -5.2 histidine utilization repressor compare
PS417_01570 -1.7 -0.9 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_01580 -1.7 -0.8 imidazole glycerol phosphate synthase compare
PS417_07115 -1.6 -10.3 L-aspartate oxidase compare
PS417_22520 -1.5 -4.0 histidine kinase compare
PS417_20985 -1.5 -2.8 porin compare
PS417_23375 -1.4 -2.5 cytochrome C oxidase compare
PS417_03245 -1.4 -7.7 omega amino acid--pyruvate aminotransferase conserved
PS417_21705 -1.4 -3.6 arginine N-succinyltransferase compare
PS417_09725 -1.4 -6.9 transporter compare
PS417_11400 -1.4 -2.2 phosphoglycerate mutase compare
PS417_21655 -1.3 -2.0 aspartate kinase compare
PS417_18420 -1.3 -2.6 deoxyribonuclease compare
PS417_22570 -1.3 -1.3 H-NS histone compare
PS417_09810 -1.3 -8.5 cytosine permease conserved
PS417_12805 -1.3 -8.2 glycogen branching protein compare
PS417_19835 -1.3 -2.0 flagellar biosynthesis protein FliS compare
PS417_24835 -1.3 -5.0 hypothetical protein compare
PS417_12555 -1.2 -4.9 phosphogluconate 2-dehydrogenase KguD (EC 1.1.1.43) (from data) compare
PS417_23170 -1.2 -2.2 FeS assembly protein IscX compare
PS417_07170 -1.2 -3.8 hypothetical protein compare
PS417_06375 -1.1 -1.3 deoxycytidine triphosphate deaminase compare
PS417_20665 -1.1 -6.1 hypothetical protein compare
PS417_04410 -1.1 -1.3 hypothetical protein compare
PS417_04685 -1.1 -3.9 histidine kinase compare
PS417_08945 -1.1 -7.1 heat shock protein 90 compare
PS417_27815 -1.1 -1.5 hypothetical protein compare
PS417_26005 -1.1 -7.1 biotin synthase compare
PS417_01145 -1.1 -1.3 taurine transporter ATP-binding subunit compare
PS417_24535 -1.1 -3.2 membrane protein compare
PS417_01560 -1.0 -1.6 imidazoleglycerol-phosphate dehydratase compare
PS417_08335 -1.0 -2.4 hypothetical protein compare
PS417_08195 -1.0 -5.6 hypothetical protein compare
PS417_26390 -1.0 -2.0 acyltransferase compare
PS417_17780 -1.0 -1.5 Ais protein compare
PS417_12355 -1.0 -1.6 magnesium chelatase compare
PS417_14940 -1.0 -2.0 LysR family transcriptional regulator compare
PS417_06530 -1.0 -3.3 membrane protein compare
PS417_01995 -1.0 -1.5 hypothetical protein compare
PS417_08200 -1.0 -3.4 hypothetical protein compare
PS417_15935 -1.0 -2.6 Rrf2 family transcriptional regulator compare
PS417_00295 -0.9 -5.6 hypothetical protein compare
PS417_06680 -0.9 -6.2 nuclease PIN compare
PS417_08540 -0.9 -2.9 RNA helicase compare
PS417_24785 -0.9 -2.7 nucleoside-diphosphate sugar epimerase compare
PS417_22500 -0.9 -7.1 porin compare
PS417_08225 -0.9 -3.2 acetolactate synthase compare
PS417_18020 -0.9 -2.0 hypothetical protein compare
PS417_18445 -0.9 -2.6 glycerol-3-phosphatase compare
PS417_27615 -0.9 -5.1 ammonia channel protein compare
PS417_19190 -0.9 -3.6 BolA family transcriptional regulator compare
PS417_24935 -0.9 -1.1 hypothetical protein compare
PS417_21030 -0.9 -4.7 GntR family transcriptional regulator compare
PS417_08130 -0.9 -1.7 aspartate aminotransferase compare
PS417_15455 -0.9 -3.5 ABC transporter substrate-binding protein compare
PS417_20170 -0.9 -2.7 hypothetical protein compare
PS417_03240 -0.9 -3.3 LysR family transcriptional regulator compare
PS417_09805 -0.9 -5.3 CdaR family transcriptional regulator compare
PS417_28510 -0.9 -4.6 chromosome partitioning protein compare
PS417_25985 -0.9 -1.8 dethiobiotin synthetase compare
PS417_28070 -0.9 -4.7 phosphate ABC transporter ATP-binding protein compare
PS417_17565 -0.8 -1.9 branched-chain amino acid aminotransferase compare
PS417_06205 -0.8 -4.1 methionine aminopeptidase compare
PS417_08205 -0.8 -3.3 acetyltransferase compare
PS417_18435 -0.8 -2.2 hypothetical protein compare
PS417_02175 -0.8 -3.0 transcriptional regulator compare
PS417_17675 -0.8 -1.6 ABC transporter compare
PS417_26540 -0.8 -4.8 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PS417_07455 -0.8 -1.7 glutamine amidotransferase compare
PS417_10010 -0.8 -1.8 Replication protein P compare
PS417_22445 -0.8 -2.1 ATP-dependent DNA helicase RuvB compare
PS417_22450 -0.8 -1.5 ATP-dependent DNA helicase RuvA compare
PS417_07165 -0.8 -5.6 dihydrodipicolinate synthase compare
PS417_13445 -0.8 -1.5 D-aminopeptidase compare
PS417_08620 -0.8 -1.0 hypothetical protein compare
PS417_13800 -0.8 -2.3 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_02705 -0.8 -1.7 urease accessory protein UreF compare
PS417_21700 -0.8 -2.6 arginine N-succinyltransferase compare
PS417_22620 -0.8 -2.2 pyruvate kinase compare
PS417_00915 -0.8 -2.2 aminotransferase compare
PS417_18495 -0.7 -2.8 hypothetical protein compare
PS417_27100 -0.7 -2.8 phosphohydrolase compare
PS417_01005 -0.7 -2.6 methionine ABC transporter substrate-binding protein compare
PS417_12735 -0.7 -1.5 peroxidase compare
PS417_21430 -0.7 -2.0 3-oxoacyl-ACP synthase compare
PS417_12280 -0.7 -0.9 MerR family transcriptional regulator compare
PS417_11535 -0.7 -1.7 nicotinate phosphoribosyltransferase compare
PS417_01730 -0.7 -3.9 histidine ABC transporter substrate-binding protein compare
PS417_22210 -0.7 -1.4 AraC family transcriptional regulator compare
PS417_22735 -0.7 -4.6 thiol oxidoreductase compare
PS417_19600 -0.7 -1.0 exonuclease compare
PS417_22195 -0.7 -3.3 peptidase compare
PS417_00650 -0.7 -0.8 LysR family transcriptional regulator compare
PS417_15460 -0.7 -3.4 GntR family transcriptional regulator compare
PS417_16515 -0.7 -1.8 Clp protease ClpS compare
PS417_02210 -0.7 -3.8 diguanylate cyclase compare
PS417_23900 -0.7 -4.3 poly(A) polymerase compare
PS417_18425 -0.7 -0.9 sporulation protein compare
PS417_21355 -0.7 -1.8 hypothetical protein compare
PS417_27515 -0.7 -3.3 heme biosynthesis protein HemY compare
PS417_07375 -0.7 -4.4 ribonuclease D compare
PS417_05570 -0.7 -2.7 DeoR faimly transcriptional regulator compare
PS417_17240 -0.7 -2.8 trigger factor compare
PS417_21980 -0.7 -4.1 permease DsdX compare
PS417_00810 -0.7 -1.6 RNA polymerase sigma factor compare
PS417_13295 -0.7 -3.2 TetR family transcriptional regulator compare
PS417_22565 -0.7 -1.1 formyltetrahydrofolate deformylase compare
PS417_13205 -0.7 -1.6 isochorismate-pyruvate lyase compare
PS417_22740 -0.7 -3.2 imelysin compare
PS417_05095 -0.7 -1.8 membrane protein compare
PS417_26815 -0.7 -1.9 peptidase M16 compare
PS417_06675 -0.7 -2.1 ATP-dependent helicase compare
PS417_08990 -0.7 -3.1 ABC transporter substrate-binding protein compare
PS417_21845 -0.6 -1.9 membrane protein compare
PS417_20340 -0.6 -1.7 hypothetical protein compare
PS417_11480 -0.6 -1.6 hypothetical protein compare
PS417_09680 -0.6 -1.5 hydrolase compare
PS417_13730 -0.6 -1.7 hypothetical protein compare
PS417_11925 -0.6 -1.9 hypothetical protein compare
PS417_13185 -0.6 -1.7 RND transporter compare
PS417_10265 -0.6 -2.3 peptidase compare
PS417_00660 -0.6 -1.5 DSBA oxidoreductase compare
PS417_27665 -0.6 -1.9 diguanylate cyclase compare
PS417_06100 -0.6 -1.5 SAM-dependent methyltransferase compare
PS417_11015 -0.6 -1.6 Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) (from data) compare
PS417_10095 -0.6 -1.0 hypothetical protein compare
PS417_05905 -0.6 -1.3 hypothetical protein compare
PS417_12220 -0.6 -1.5 hydroxyacylglutathione hydrolase compare
PS417_08245 -0.6 -0.7 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_21870 -0.6 -1.6 glycerophosphodiester phosphodiesterase compare
PS417_16555 -0.6 -1.4 cupin compare
PS417_05985 -0.6 -1.6 chemotaxis protein CheY compare
PS417_18815 -0.6 -3.4 glutathione S-transferase compare
PS417_19755 -0.6 -1.0 flagellar motor switch protein FliM compare
PS417_06895 -0.6 -1.6 DNA-binding protein compare
PS417_03560 -0.6 -1.1 GTP-binding protein compare


Specific Phenotypes

For 5 genes in this experiment

For nitrogen source Cytosine in Pseudomonas simiae WCS417

For nitrogen source Cytosine across organisms