Experiment set5IT089 for Pseudomonas simiae WCS417

Compare to:

Cytidine nitrogen source

200 most important genes:

  gene name fitness t score description  
PS417_01635 -8.3 -8.1 nitrogen regulation protein NR(I) compare
PS417_23805 -7.2 -5.0 acetolactate synthase 3 regulatory subunit compare
PS417_01855 -7.1 -4.2 phosphoribosyl-AMP cyclohydrolase compare
PS417_02005 -6.7 -9.3 glutamate synthase compare
PS417_23545 -6.5 -4.5 gamma-glutamyl kinase compare
PS417_18585 -6.4 -4.4 3-isopropylmalate dehydrogenase compare
PS417_27040 -6.3 -3.5 3-phosphoglycerate dehydrogenase compare
PS417_23800 -6.1 -11.7 ketol-acid reductoisomerase compare
PS417_01575 -6.1 -5.7 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_25720 -5.8 -10.5 anthranilate synthase component II compare
PS417_26740 -5.8 -10.5 homoserine acetyltransferase compare
PS417_18600 -5.8 -4.7 isopropylmalate isomerase compare
PS417_04415 -5.6 -10.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_22690 -5.5 -3.8 phosphogluconate dehydratase compare
PS417_18560 -5.2 -9.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_18595 -5.2 -4.2 3-isopropylmalate dehydratase compare
PS417_02510 -5.1 -7.5 ATP phosphoribosyltransferase regulatory subunit compare
PS417_00185 -5.1 -6.0 tryptophan synthase subunit beta compare
PS417_25715 -5.0 -7.5 anthranilate phosphoribosyltransferase compare
PS417_25725 -5.0 -17.8 anthranilate synthase component I compare
PS417_26745 -4.9 -7.4 methionine biosynthesis protein MetW compare
PS417_04420 -4.8 -12.8 histidinol dehydrogenase compare
PS417_02000 -4.8 -13.0 glutamate synthase compare
PS417_01640 -4.7 -5.5 histidine kinase compare
PS417_23810 -4.7 -12.4 acetolactate synthase 3 catalytic subunit compare
PS417_01565 -4.7 -4.8 imidazole glycerol phosphate synthase compare
PS417_24745 -4.7 -6.4 gamma-glutamyl phosphate reductase compare
PS417_01850 -4.5 -10.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_06200 -4.4 -8.4 protein-PII uridylyltransferase compare
PS417_00180 -4.3 -4.2 tryptophan synthase subunit alpha compare
PS417_18530 -4.3 -7.0 O-succinylhomoserine sulfhydrylase compare
PS417_12855 -4.3 -7.0 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_12290 -4.1 -9.8 sulfite reductase compare
PS417_23995 -4.1 -1.5 preprotein translocase subunit SecG compare
PS417_25710 -3.9 -2.1 indole-3-glycerol-phosphate synthase compare
PS417_20125 -3.6 -5.6 phosphoribosylglycinamide formyltransferase compare
PS417_28220 -3.6 -3.8 LysR family transcriptional regulator compare
PS417_05595 -3.6 -7.2 ornithine carbamoyltransferase compare
PS417_27195 -3.5 -1.7 N-acetylglutamate synthase compare
PS417_21035 -3.5 -12.9 multidrug transporter compare
PS417_01580 -3.4 -1.6 imidazole glycerol phosphate synthase compare
PS417_27835 -3.4 -7.5 endoribonuclease compare
PS417_26890 -3.3 -5.4 dihydroxy-acid dehydratase compare
PS417_27705 -3.2 -2.4 amino acid dehydrogenase compare
PS417_09800 -3.1 -6.8 cytosine deaminase conserved
PS417_23110 -3.1 -6.7 2-isopropylmalate synthase compare
PS417_03925 -3.1 -8.7 nicotinate-nucleotide pyrophosphorylase compare
PS417_02415 -3.1 -5.0 phosphoserine phosphatase compare
PS417_22385 -2.9 -11.6 quinolinate synthase A compare
PS417_21125 -2.9 -8.9 phosphoadenosine phosphosulfate reductase compare
PS417_26730 -2.8 -1.5 pyrroline-5-carboxylate reductase compare
PS417_27010 -2.8 -14.0 threonine dehydratase compare
PS417_17325 -2.7 -5.2 dihydropyrimidine dehydrogenase compare
PS417_17330 -2.7 -5.7 Dihydropyrimidine dehydrogenase (NADP(+)) (EC 1.3.1.2) (from data) compare
PS417_17320 -2.7 -3.8 phenylhydantoinase compare
PS417_16005 -2.7 -3.4 ATPase compare
PS417_01570 -2.7 -1.9 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_20160 -2.6 -6.3 cysteine synthase compare
PS417_16465 -2.6 -5.6 sirohydrochlorin ferrochelatase compare
PS417_26995 -2.5 -12.0 phosphoserine phosphatase compare
PS417_26985 -2.4 -4.0 phosphoenolpyruvate-protein phosphotransferase compare
PS417_08125 -2.4 -2.1 prephenate dehydratase compare
PS417_01605 -2.0 -2.2 phosphoglycerate mutase compare
PS417_24155 -2.0 -2.9 ATP-binding protein compare
PS417_09810 -2.0 -10.3 cytosine permease compare
PS417_06375 -1.9 -1.6 deoxycytidine triphosphate deaminase compare
PS417_07115 -1.9 -10.2 L-aspartate oxidase compare
PS417_08155 -1.9 -3.5 integration host factor subunit beta compare
PS417_01560 -1.8 -2.0 imidazoleglycerol-phosphate dehydratase compare
PS417_08220 -1.7 -1.4 epimerase compare
PS417_22520 -1.7 -3.9 histidine kinase compare
PS417_01710 -1.6 -4.5 histidine utilization repressor compare
PS417_06680 -1.6 -9.0 nuclease PIN compare
PS417_27615 -1.5 -6.0 ammonia channel protein compare
PS417_23135 -1.4 -2.4 GTP-binding protein compare
PS417_07170 -1.4 -3.2 hypothetical protein compare
PS417_20635 -1.4 -1.2 ABC transporter ATP-binding protein compare
PS417_08200 -1.3 -3.9 hypothetical protein compare
PS417_26005 -1.3 -7.7 biotin synthase compare
PS417_08990 -1.3 -3.8 ABC transporter substrate-binding protein compare
PS417_20665 -1.3 -6.0 hypothetical protein compare
PS417_21430 -1.3 -2.4 3-oxoacyl-ACP synthase compare
PS417_18425 -1.3 -1.2 sporulation protein compare
PS417_21705 -1.3 -3.7 arginine N-succinyltransferase compare
PS417_23170 -1.2 -1.7 FeS assembly protein IscX compare
PS417_24935 -1.2 -1.3 hypothetical protein compare
PS417_08945 -1.2 -6.7 heat shock protein 90 compare
PS417_12805 -1.2 -6.8 glycogen branching protein compare
PS417_08195 -1.2 -6.1 hypothetical protein compare
PS417_08225 -1.2 -4.1 acetolactate synthase compare
PS417_03245 -1.1 -6.0 omega amino acid--pyruvate aminotransferase conserved
PS417_12555 -1.1 -4.8 phosphogluconate 2-dehydrogenase KguD (EC 1.1.1.43) (from data) compare
PS417_08540 -1.1 -3.0 RNA helicase compare
PS417_06205 -1.1 -4.9 methionine aminopeptidase compare
PS417_09805 -1.1 -4.3 CdaR family transcriptional regulator compare
PS417_24835 -1.1 -3.7 hypothetical protein compare
PS417_01715 -1.1 -1.6 hypothetical protein compare
PS417_23770 -1.1 -1.9 exodeoxyribonuclease V subunit alpha compare
PS417_27800 -1.0 -4.9 exodeoxyribonuclease III compare
PS417_06100 -1.0 -2.0 SAM-dependent methyltransferase compare
PS417_17340 -1.0 -5.2 GNAT family acetyltransferase compare
PS417_00295 -1.0 -5.0 hypothetical protein compare
PS417_08245 -1.0 -0.9 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_18400 -1.0 -3.3 D-ribose ABC transporter, ATPase component RbsA (from data) compare
PS417_19600 -1.0 -1.2 exonuclease compare
PS417_21070 -0.9 -2.0 aconitate hydratase compare
PS417_02555 -0.9 -6.9 exoribonuclease R compare
PS417_21700 -0.9 -3.1 arginine N-succinyltransferase compare
PS417_14655 -0.9 -1.1 lysine transporter LysE compare
PS417_18540 -0.9 -2.2 colicin V production CvpA compare
PS417_07875 -0.9 -1.0 hypothetical protein compare
PS417_14455 -0.9 -2.2 polyketide cyclase compare
PS417_05650 -0.9 -2.3 leucyl-tRNA synthetase compare
PS417_00065 -0.8 -1.4 3-methyladenine DNA glycosylase compare
PS417_12595 -0.8 -1.6 transcriptional regulator compare
PS417_04595 -0.8 -2.3 cell division protein MraZ compare
PS417_04685 -0.8 -4.1 histidine kinase compare
PS417_26000 -0.8 -4.5 8-amino-7-oxononanoate synthase compare
PS417_08335 -0.8 -1.9 hypothetical protein compare
PS417_22620 -0.8 -3.2 pyruvate kinase compare
PS417_16520 -0.8 -1.4 cold-shock protein compare
PS417_18370 -0.8 -1.6 hypothetical protein compare
PS417_11820 -0.8 -1.2 histidine kinase compare
PS417_07940 -0.8 -1.7 hypothetical protein compare
PS417_18445 -0.8 -2.0 glycerol-3-phosphatase compare
PS417_20140 -0.8 -2.0 nucleoprotein/polynucleotide-associated enzyme compare
PS417_00550 -0.8 -0.9 hypothetical protein compare
PS417_17315 -0.8 -4.4 nitrate reductase compare
PS417_26445 -0.8 -2.3 ArsR family transcriptional regulator compare
PS417_23900 -0.8 -4.3 poly(A) polymerase compare
PS417_13730 -0.8 -2.2 hypothetical protein compare
PS417_11455 -0.8 -1.5 hypothetical protein compare
PS417_08580 -0.8 -3.7 histidine kinase compare
PS417_18395 -0.8 -1.4 D-ribose ABC transporter, permease component RbsC (from data) compare
PS417_09725 -0.8 -4.7 transporter compare
PS417_27005 -0.8 -0.9 membrane protein compare
PS417_14605 -0.8 -1.6 adenylate kinase compare
PS417_23390 -0.8 -4.0 ubiquinol oxidase subunit II compare
PS417_16000 -0.8 -1.6 chemotaxis protein CheY compare
PS417_05165 -0.8 -1.9 cytosol aminopeptidase compare
PS417_22565 -0.8 -1.1 formyltetrahydrofolate deformylase compare
PS417_00485 -0.8 -1.7 ABC transporter permease compare
PS417_04340 -0.7 -3.6 ribosome hibernation promoting factor HPF compare
PS417_07375 -0.7 -4.6 ribonuclease D compare
PS417_05130 -0.7 -2.4 glutaredoxin compare
PS417_08410 -0.7 -1.2 hypothetical protein compare
PS417_08205 -0.7 -2.2 acetyltransferase compare
PS417_11925 -0.7 -2.0 hypothetical protein compare
PS417_08590 -0.7 -1.4 hypothetical protein compare
PS417_13445 -0.7 -1.4 D-aminopeptidase compare
PS417_17645 -0.7 -1.1 RND transporter compare
PS417_06530 -0.7 -2.1 membrane protein compare
PS417_06195 -0.7 -3.6 succinyldiaminopimelate aminotransferase compare
PS417_26540 -0.7 -4.3 adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PS417_07985 -0.7 -0.8 AbrB family transcriptional regulator compare
PS417_28080 -0.7 -5.0 phosphate ABC transporter permease compare
PS417_22570 -0.7 -0.8 H-NS histone compare
PS417_10185 -0.7 -2.2 hypothetical protein compare
PS417_10025 -0.7 -1.1 bacteriophage lambda NinG family protein compare
PS417_18420 -0.7 -1.7 deoxyribonuclease compare
PS417_08740 -0.7 -1.5 ribose-phosphate pyrophosphokinase compare
PS417_19095 -0.7 -1.0 hypothetical protein compare
PS417_21015 -0.7 -1.8 EstX protein compare
PS417_16395 -0.7 -1.3 arsenate reductase compare
PS417_02055 -0.7 -1.7 methyltransferase compare
PS417_14515 -0.7 -1.4 acetylglucosaminylphosphatidylinositol deacetylase compare
PS417_23375 -0.7 -1.3 cytochrome C oxidase compare
PS417_01735 -0.7 -1.9 ABC transporter permease compare
PS417_17240 -0.7 -1.7 trigger factor compare
PS417_27875 -0.7 -2.9 histidine kinase compare
PS417_19190 -0.7 -1.6 BolA family transcriptional regulator compare
PS417_15725 -0.7 -2.8 nitrate/nitrite transporter NarK compare
PS417_28070 -0.7 -3.5 phosphate ABC transporter ATP-binding protein compare
PS417_10675 -0.7 -0.8 TetR family transcriptional regulator compare
PS417_22735 -0.6 -3.5 thiol oxidoreductase compare
PS417_11430 -0.6 -3.3 EamA compare
PS417_03560 -0.6 -1.6 GTP-binding protein compare
PS417_06355 -0.6 -1.4 protein-L-isoaspartate O-methyltransferase compare
PS417_27315 -0.6 -1.1 hypothetical protein compare
PS417_08430 -0.6 -2.4 phospho-2-dehydro-3-deoxyheptonate aldolase compare
PS417_04965 -0.6 -1.8 hypothetical protein compare
PS417_17900 -0.6 -1.7 transcriptional regulator compare
PS417_28075 -0.6 -3.6 phosphate ABC transporter permease compare
PS417_27135 -0.6 -0.6 glutamine synthetase compare
PS417_12310 -0.6 -3.9 methionine synthase compare
PS417_19280 -0.6 -3.9 hypothetical protein compare
PS417_11725 -0.6 -2.3 peptidase M19 compare
PS417_13490 -0.6 -1.2 hypothetical protein compare
PS417_11945 -0.6 -1.3 hypothetical protein compare
PS417_03455 -0.6 -1.1 type III secretion protein compare
PS417_28050 -0.6 -1.6 hypothetical protein compare
PS417_02705 -0.6 -1.5 urease accessory protein UreF compare
PS417_28510 -0.6 -2.2 chromosome partitioning protein compare
PS417_24585 -0.6 -4.1 AMP nucleosidase compare
PS417_06165 -0.6 -1.9 thiamine biosynthesis protein ThiF compare
PS417_26815 -0.6 -1.7 peptidase M16 compare
PS417_28230 -0.6 -1.5 transcriptional regulator compare
PS417_02210 -0.6 -3.4 diguanylate cyclase compare
PS417_05570 -0.6 -3.2 DeoR faimly transcriptional regulator compare
PS417_15135 -0.6 -1.2 hypothetical protein compare


Specific Phenotypes

For 6 genes in this experiment

For nitrogen source Cytidine in Pseudomonas simiae WCS417

For nitrogen source Cytidine across organisms