Experiment set5IT088 for Pseudomonas putida KT2440

Compare to:

p-Coumaric acid carbon source

200 most important genes:

  gene name fitness t score description  
PP_0293 -6.9 -4.8 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0422 -6.9 -4.7 Indole-3-glycerol phosphate synthase compare
PP_0290 -6.5 -7.7 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0691 -6.4 -6.2 Glutamate 5-kinase compare
PP_1988 -6.3 -7.4 3-isopropylmalate dehydrogenase compare
PP_0083 -6.1 -4.2 tryptophan synthase beta chain compare
PP_3356 -6.1 -14.1 p-coumarate CoA-ligase (EC 6.2.1.12) (from data) conserved
PP_1985 -6.0 -5.8 3-isopropylmalate dehydratase large subunit compare
PP_0082 -6.0 -4.1 tryptophan synthase alpha chain compare
PP_0967 -5.9 -10.6 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0966 -5.9 -10.6 Histidinol dehydrogenase compare
PP_3952 -5.8 -9.7 3-oxoadipate CoA-transferase subunit A conserved
PP_1377 -5.8 -8.0 beta-ketoadipyl-CoA thiolase conserved
PP_4678 -5.7 -14.2 Ketol-acid reductoisomerase compare
PP_1986 -5.7 -3.9 3-isopropylmalate dehydratase small subunit compare
PP_2168 -5.5 -12.3 Transaldolase compare
PP_4680 -5.5 -12.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_3951 -5.5 -8.0 3-oxoadipate CoA-transferase subunit A compare
PP_1995 -5.5 -10.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_4909 -5.5 -9.1 phosphoserine phosphatase compare
PP_0184 -5.4 -9.8 Argininosuccinate lyase compare
PP_5289 -5.4 -7.4 Acetylglutamate kinase compare
PP_1379 -5.3 -7.3 3-carboxy-cis,cis-muconate cycloisomerase compare
PP_1088 -5.3 -16.1 Argininosuccinate synthase compare
PP_0420 -5.3 -12.8 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5185 -5.3 -9.4 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_3357 -5.2 -6.9 p-hydroxybenzaldehyde dehydrogenase vdh (EC 1.2.1.64) (from data) conserved
PP_5014 -5.2 -5.1 Phosphoribosyl-AMP cyclohydrolase compare
PP_0417 -5.1 -19.1 Anthranilate synthase component 1 compare
PP_3511 -5.1 -9.7 Branched-chain-amino-acid aminotransferase compare
PP_1381 -5.0 -2.4 4-carboxymuconolactone decarboxylase compare
PP_4799 -5.0 -4.8 putative Muramoyltetrapeptide carboxypeptidase compare
PP_4696 -5.0 -7.6 Nitrogen regulation protein NR(I) compare
PP_1025 -4.9 -16.1 2-isopropylmalate synthase compare
PP_3358 -4.9 -8.4 hydroxycinnamoyl-CoA hydratase-lyase (EC 4.1.2.61) (from data) compare
PP_0289 -4.9 -10.6 Imidazoleglycerol-phosphate dehydratase compare
PP_5097 -4.9 -16.5 homoserine O-acetyltransferase compare
PP_5128 -4.8 -11.0 Dihydroxy-acid dehydratase compare
PP_0421 -4.7 -8.7 Anthranilate phosphoribosyltransferase compare
PP_5015 -4.6 -6.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_3999 -4.6 -8.2 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5155 -4.6 -7.0 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4890 -4.5 -6.9 ATP phosphoribosyltransferase regulatory subunit compare
PP_4700 -4.5 -5.3 pantothenate synthetase compare
PP_2001 -4.3 -11.7 O-succinylhomoserine sulfhydrylase compare
PP_4679 -4.2 -8.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1375 -4.2 -15.4 transcription regulatory protein (pca regulon) compare
PP_1079 -4.1 -8.8 Ornithine carbamoyltransferase compare
PP_4693 -4.1 -10.3 RNA polymerase-binding transcription factor DksA compare
PP_4723 -4.1 -8.6 Carbamoyl-phosphate synthase large chain compare
PP_4724 -4.0 -3.9 Carbamoyl-phosphate synthase small chain compare
PP_5098 -4.0 -10.7 methionine biosynthesis protein MetW compare
PP_0965 -4.0 -9.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_4999 -3.9 -2.7 dihydroorotase-like protein compare
PP_5303 -3.9 -7.7 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_5095 -3.8 -4.1 pyrroline-5-carboxylate reductase compare
PP_1380 -3.6 -6.7 3-oxoadipate enol-lactonase 2 conserved
PP_4655 -3.6 -7.9 protocatechuate 3,4-dioxygenase alpha chain conserved
PP_0291 -3.6 -3.8 conserved protein of unknown function compare
PP_2371 -3.6 -7.5 Sulphite reductase hemoprotein, beta subunit compare
PP_4656 -3.5 -9.2 protocatechuate 3,4-dioxygenase beta chain compare
PP_2370 -3.5 -4.5 conserved protein of unknown function compare
PP_3537 -3.5 -13.9 p-hydroxybenzoate hydroxylase conserved
PP_0292 -3.4 -6.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_2328 -3.4 -7.3 Phosphoadenosine phosphosulfate reductase compare
PP_1664 -3.3 -5.8 phosphoribosylglycinamide formyltransferase 1 compare
PP_1713 -3.2 -3.7 Transcriptional regulator PcaQ compare
PP_5075 -3.2 -14.1 glutamate synthase (NADPH) beta subunit compare
PP_0393 -3.1 -5.4 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_3538 -3.0 -13.2 transcriptional regulator conserved
PP_5216 -2.8 -3.7 exopolyphosphatase compare
PP_4964 -2.7 -5.6 D-erythrose 4-phosphate dehydrogenase compare
PP_2327 -2.7 -7.8 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0339 -2.6 -4.3 Pyruvate dehydrogenase E1 component compare
PP_3590 -2.5 -9.7 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_1656 -2.5 -5.3 ATP:GTP 3'-pyrophosphotransferase compare
PP_1110 -2.4 -3.9 serine acetyltransferase compare
PP_5076 -2.4 -17.1 L-glutamate synthase(NADPH) alpha subunit compare
PP_4058 -2.2 -11.8 1,4-alpha-glucan branching enzyme compare
PP_0356 -2.0 -9.1 malate synthase G compare
PP_4122 -2.0 -3.0 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4121 -1.9 -7.5 NADH-quinone oxidoreductase subunit C/D compare
PP_4120 -1.9 -5.7 NADH-quinone oxidoreductase subunit B compare
PP_0368 -1.9 -9.9 putative Acyl-CoA dehydrogenase compare
PP_4131 -1.8 -7.9 NADH-quinone oxidoreductase subunit N compare
PP_1109 -1.8 -9.2 Transcriptional regulator, GntR family compare
PP_3790 -1.8 -9.3 diaminopimelate epimerase compare
PP_3105 -1.8 -4.2 conserved membrane protein of unknown function compare
PP_0428 -1.8 -8.8 aminoacyl-adenylate hydrolase/purine nucleoside phosphoramidase compare
PP_1589 -1.7 -9.9 uridylyltransferase compare
PP_2388 -1.7 -4.4 Transporter, LysE family compare
PP_2136 -1.7 -5.4 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_1111 -1.6 -4.3 putative Synthetase compare
PP_4902 -1.6 -4.4 Oligoribonuclease compare
PP_2356 -1.6 -9.8 putative Phytochrome family protein compare
PP_2000 -1.6 -3.0 amidophosphoribosyl transferase compare
PP_3662 -1.6 -8.2 conserved protein of unknown function compare
PP_5227 -1.6 -7.2 diaminopimelate decarboxylase compare
PP_0980 -1.5 -6.8 Probable cytosol aminopeptidase compare
PP_4726 -1.5 -4.2 Chaperone protein DnaJ compare
PP_4937 -1.5 -4.8 toluene tolerance protein compare
PP_4804 -1.5 -4.6 RlpA-like lipoprotein compare
PP_5346 -1.4 -6.9 pyruvate carboxylase subunit B compare
PP_1237 -1.4 -2.6 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_1764 -1.3 -4.2 Phosphoglycolate phosphatase 2 compare
PP_0760 -1.3 -3.3 conserved membrane protein of unknown function compare
PP_5048 -1.3 -4.9 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_2354 -1.3 -8.0 Sensory box histidine kinase/response regulator compare
PP_5347 -1.3 -8.4 pyruvate carboxylase subunit A compare
PP_4695 -1.3 -6.3 Sensory box histidine kinase compare
PP_5348 -1.3 -6.9 Transcriptional regulator, LysR family compare
PP_1468 -1.3 -3.3 Tyrosine recombinase XerD compare
PP_2390 -1.2 -6.1 Transcriptional regulator, LysR family compare
PP_3035 -1.2 -3.0 conserved protein of unknown function compare
PP_0949 -1.2 -7.0 putative ATP-binding protein UPF0042 compare
PP_1378 -1.2 -4.2 alpha-ketoglutarate permease compare
PP_0961 -1.2 -7.4 toluene tolerance protein compare
PP_4004 -1.2 -4.3 DNA translocase FtsK compare
PP_4129 -1.2 -4.0 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_2137 -1.2 -3.4 beta-ketoadipyl CoA thiolase, beta component compare
PP_1826 -1.2 -2.1 Hydrolase, isochorismatase family compare
PP_2324 -1.2 -4.6 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_5445 -1.1 -2.4 conserved protein of unknown function compare
PP_4124 -1.1 -4.4 NADH-quinone oxidoreductase subunit G compare
PP_2509 -1.1 -3.8 conserved protein of unknown function compare
PP_1654 -1.1 -2.8 cysteine synthase B compare
PP_4895 -1.1 -2.8 tRNA dimethylallyltransferase compare
PP_3539 -1.1 -3.7 putative Transcriptional regulator compare
PP_5085 -1.1 -6.2 malic enzyme B compare
PP_5035 -1.0 -5.7 Histidine utilization repressor compare
PP_0958 -1.0 -5.3 phospholipid ABC transporter ATP-binding subunit compare
PP_0719 -1.0 -2.0 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_0063 -1.0 -3.6 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_1075 -1.0 -6.8 glycerol kinase compare
PP_4988 -1.0 -4.5 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_0910 -1.0 -5.7 conserved exported protein of unknown function compare
PP_5453 -1.0 -1.3 conserved protein of unknown function compare
PP_0673 -1.0 -1.7 conserved protein of unknown function compare
PP_1216 -1.0 -2.6 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_0960 -1.0 -3.8 phospholipid ABC transporter binding protein compare
PP_4130 -1.0 -2.4 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_2163 -1.0 -5.2 VacJ lipoprotein compare
PP_4699 -0.9 -3.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_1304 -0.9 -6.2 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_3239 -0.9 -1.9 putative cointegrate resolution protein T Tn4652 compare
PP_2302 -0.9 -4.8 DNA-binding, ATP-dependent protease compare
PP_0022 -0.9 -1.3 hypothetical protein compare
PP_2668 -0.9 -2.2 ABC efflux transporter, ATP-binding protein compare
PP_4546 -0.9 -3.7 ATP-dependent helicase HrpA compare
PP_5217 -0.9 -6.0 Polyphosphate kinase compare
PP_5028 -0.9 -3.0 proline iminopeptidase compare
PP_5552 -0.9 -1.7 conserved protein of unknown function compare
PP_2088 -0.9 -2.6 RNA polymerase sigma factor SigX compare
PP_5058 -0.8 -4.6 Carboxy-terminal-processing protease compare
PP_1076 -0.8 -5.3 aquaglyceroporin compare
PP_0725 -0.8 -4.0 conserved hypothetical TPR repeat protein compare
PP_5073 -0.8 -2.2 conserved exported protein of unknown function compare
PP_2878 -0.8 -2.2 conserved protein of unknown function compare
PP_4848 -0.8 -2.4 Curved DNA-binding protein compare
PP_4481 -0.8 -4.0 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_0547 -0.8 -3.1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_0846 -0.8 -1.5 DnaK-like molecular chaperone specific for IscU compare
PP_1789 -0.8 -3.6 Hydrolase, haloacid dehalogenase-like family compare
PP_4098 -0.8 -2.4 UvrABC system protein C compare
PP_5047 -0.8 -2.5 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_0916 -0.8 -2.4 Amino acid transporter LysE compare
PP_1729 -0.8 -1.8 conserved protein of unknown function compare
PP_1303 -0.8 -3.7 Sulfate adenylyltransferase subunit 2 compare
PP_5055 -0.8 -3.4 Sulfurtransferase compare
PP_3102 -0.8 -2.4 conserved protein of unknown function compare
PP_4204 -0.8 -3.5 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_3603 -0.8 -4.3 Transcriptional regulator, GntR family compare
PP_0959 -0.8 -2.3 phospholipid ABC transporter compare
PP_2499 -0.8 -1.5 conserved protein of unknown function compare
PP_4247 -0.8 -1.2 Exonuclease compare
PP_4008 -0.8 -3.8 ATP-dependent serine protease compare
PP_1128 -0.8 -3.3 OmpA family protein compare
PP_2884 -0.8 -3.8 XRE family transcriptional regulator compare
PP_2060 -0.8 -1.6 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_1217 -0.8 -2.9 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1876 -0.8 -2.6 putative ATP/GTP-binding protein of the AAA+ family compare
PP_3505 -0.8 -2.1 conserved protein of unknown function compare
PP_2900 -0.7 -2.2 conserved protein of unknown function compare
PP_1404 -0.7 -2.3 conserved protein of unknown function compare
PP_1208 -0.7 -2.6 conserved protein of unknown function, SlyX family compare
PP_0832 -0.7 -2.8 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_0001 -0.7 -1.8 probable chromosome-partitioning protein compare
PP_2820 -0.7 -2.8 HTH-type transcriptional regulator nfxB compare
PP_3946 -0.7 -1.3 HTH-type transcriptional repressor NicR compare
PP_4874 -0.7 -1.2 50S ribosomal protein L9 compare
PP_1813 -0.7 -2.9 ComEA-related protein compare
PP_4828 -0.7 -1.5 Precorrin-8X methylmutase compare
PP_3110 -0.7 -1.7 protein of unknown function compare
PP_1233 -0.7 -3.0 sulfurtransferase compare
PP_1346 -0.7 -2.5 Glutamate N-acetyltransferase/Amino-acid acetyltransferase compare
PP_1041 -0.7 -1.8 twin arginine protein export complex subunit compare
PP_5329 -0.7 -2.3 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_5294 -0.7 -3.9 Ribonuclease PH compare
PP_2306 -0.7 -1.8 conserved exported protein of unknown function compare
PP_0425 -0.7 -2.5 conserved protein of unknown function compare


Specific Phenotypes

For 13 genes in this experiment

For carbon source p-Coumaric acid in Pseudomonas putida KT2440

For carbon source p-Coumaric acid across organisms