Experiment set5IT087 for Pseudomonas simiae WCS417

Compare to:

Uridine nitrogen source

200 most important genes:

  gene name fitness t score description  
PS417_01575 -9.4 -5.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_01635 -8.4 -10.0 nitrogen regulation protein NR(I) compare
PS417_17330 -7.2 -5.0 Dihydropyrimidine dehydrogenase (NADP(+)) (EC 1.3.1.2) (from data) compare
PS417_25720 -7.1 -10.8 anthranilate synthase component II compare
PS417_23800 -6.9 -9.5 ketol-acid reductoisomerase compare
PS417_18560 -6.9 -12.4 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_00185 -6.8 -4.7 tryptophan synthase subunit beta compare
PS417_23805 -6.7 -6.6 acetolactate synthase 3 regulatory subunit compare
PS417_27040 -6.7 -3.7 3-phosphoglycerate dehydrogenase compare
PS417_04415 -6.5 -9.0 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_01640 -6.5 -4.5 histidine kinase compare
PS417_17325 -6.5 -6.3 dihydropyrimidine dehydrogenase conserved
PS417_18585 -6.3 -6.1 3-isopropylmalate dehydrogenase compare
PS417_18600 -6.1 -4.1 isopropylmalate isomerase compare
PS417_02005 -6.0 -12.5 glutamate synthase compare
PS417_25725 -5.8 -15.3 anthranilate synthase component I compare
PS417_01855 -5.7 -5.4 phosphoribosyl-AMP cyclohydrolase compare
PS417_02000 -5.6 -13.0 glutamate synthase compare
PS417_06200 -5.3 -10.2 protein-PII uridylyltransferase compare
PS417_24745 -5.3 -6.3 gamma-glutamyl phosphate reductase compare
PS417_26740 -5.3 -15.8 homoserine acetyltransferase compare
PS417_04420 -5.2 -10.7 histidinol dehydrogenase compare
PS417_17320 -5.1 -3.5 phenylhydantoinase compare
PS417_23810 -5.0 -13.0 acetolactate synthase 3 catalytic subunit compare
PS417_18530 -5.0 -10.0 O-succinylhomoserine sulfhydrylase compare
PS417_01850 -4.7 -11.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_02510 -4.6 -4.7 ATP phosphoribosyltransferase regulatory subunit compare
PS417_26745 -4.5 -5.5 methionine biosynthesis protein MetW compare
PS417_00180 -4.4 -4.8 tryptophan synthase subunit alpha compare
PS417_18595 -4.2 -3.0 3-isopropylmalate dehydratase compare
PS417_25710 -4.2 -2.2 indole-3-glycerol-phosphate synthase compare
PS417_27705 -4.2 -2.7 amino acid dehydrogenase compare
PS417_26985 -3.9 -4.7 phosphoenolpyruvate-protein phosphotransferase compare
PS417_02415 -3.8 -6.8 phosphoserine phosphatase compare
PS417_27195 -3.8 -1.8 N-acetylglutamate synthase compare
PS417_01565 -3.8 -4.0 imidazole glycerol phosphate synthase compare
PS417_01580 -3.7 -1.7 imidazole glycerol phosphate synthase compare
PS417_21035 -3.7 -16.1 multidrug transporter compare
PS417_05595 -3.7 -6.7 ornithine carbamoyltransferase compare
PS417_03245 -3.6 -11.6 omega amino acid--pyruvate aminotransferase conserved
PS417_25715 -3.6 -4.4 anthranilate phosphoribosyltransferase compare
PS417_12290 -3.5 -7.7 sulfite reductase compare
PS417_27835 -3.3 -11.9 endoribonuclease compare
PS417_22450 -3.3 -3.2 ATP-dependent DNA helicase RuvA compare
PS417_23110 -3.2 -5.8 2-isopropylmalate synthase compare
PS417_16005 -3.2 -5.2 ATPase compare
PS417_22690 -3.2 -5.5 phosphogluconate dehydratase compare
PS417_26730 -3.1 -1.6 pyrroline-5-carboxylate reductase compare
PS417_23995 -3.1 -1.6 preprotein translocase subunit SecG compare
PS417_23545 -3.1 -2.7 gamma-glutamyl kinase compare
PS417_24155 -3.0 -4.1 ATP-binding protein compare
PS417_28220 -3.0 -3.2 LysR family transcriptional regulator compare
PS417_23170 -2.9 -3.4 FeS assembly protein IscX compare
PS417_01605 -2.8 -2.4 phosphoglycerate mutase compare
PS417_01560 -2.6 -3.6 imidazoleglycerol-phosphate dehydratase compare
PS417_26890 -2.5 -3.9 dihydroxy-acid dehydratase compare
PS417_20160 -2.5 -3.5 cysteine synthase compare
PS417_21125 -2.5 -9.0 phosphoadenosine phosphosulfate reductase compare
PS417_16465 -2.3 -5.7 sirohydrochlorin ferrochelatase compare
PS417_20125 -2.3 -4.5 phosphoribosylglycinamide formyltransferase compare
PS417_08155 -2.2 -1.2 integration host factor subunit beta compare
PS417_12855 -2.2 -5.8 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_06375 -2.2 -1.9 deoxycytidine triphosphate deaminase compare
PS417_03925 -2.1 -5.4 nicotinate-nucleotide pyrophosphorylase compare
PS417_03240 -2.1 -4.5 LysR family transcriptional regulator compare
PS417_01710 -2.1 -8.4 histidine utilization repressor compare
PS417_24835 -2.0 -6.7 hypothetical protein compare
PS417_12805 -2.0 -10.3 glycogen branching protein compare
PS417_08125 -1.9 -2.2 prephenate dehydratase compare
PS417_04685 -1.9 -8.1 histidine kinase conserved
PS417_22385 -1.8 -11.1 quinolinate synthase A compare
PS417_27615 -1.8 -8.4 ammonia channel protein conserved
PS417_01570 -1.8 -1.8 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_08225 -1.7 -7.4 acetolactate synthase compare
PS417_21030 -1.7 -9.2 GntR family transcriptional regulator compare
PS417_07160 -1.7 -8.0 glycine cleavage system protein R conserved
PS417_19190 -1.7 -3.8 BolA family transcriptional regulator compare
PS417_08205 -1.7 -5.4 acetyltransferase compare
PS417_08220 -1.7 -1.5 epimerase compare
PS417_22500 -1.7 -10.9 porin compare
PS417_26995 -1.6 -7.6 phosphoserine phosphatase compare
PS417_28070 -1.6 -6.1 phosphate ABC transporter ATP-binding protein compare
PS417_04595 -1.5 -3.9 cell division protein MraZ compare
PS417_22520 -1.5 -3.4 histidine kinase compare
PS417_27010 -1.5 -10.3 threonine dehydratase compare
PS417_22195 -1.5 -6.4 peptidase compare
PS417_23770 -1.5 -2.7 exodeoxyribonuclease V subunit alpha compare
PS417_27665 -1.4 -4.4 diguanylate cyclase compare
PS417_28080 -1.4 -10.0 phosphate ABC transporter permease compare
PS417_20665 -1.4 -7.6 hypothetical protein compare
PS417_02720 -1.3 -1.3 TetR family transcriptional regulator compare
PS417_08195 -1.3 -7.0 hypothetical protein compare
PS417_07115 -1.3 -8.5 L-aspartate oxidase compare
PS417_22745 -1.3 -7.2 hypothetical protein compare
PS417_05570 -1.3 -4.8 DeoR faimly transcriptional regulator compare
PS417_22735 -1.3 -7.3 thiol oxidoreductase compare
PS417_20610 -1.3 -1.4 hypothetical protein compare
PS417_20635 -1.3 -1.3 ABC transporter ATP-binding protein compare
PS417_26005 -1.2 -7.6 biotin synthase compare
PS417_22740 -1.2 -6.2 imelysin compare
PS417_07375 -1.2 -6.3 ribonuclease D compare
PS417_08200 -1.1 -3.8 hypothetical protein compare
PS417_18425 -1.1 -1.3 sporulation protein compare
PS417_00295 -1.1 -5.0 hypothetical protein compare
PS417_27800 -1.1 -5.8 exodeoxyribonuclease III compare
PS417_27005 -1.1 -1.3 membrane protein compare
PS417_08230 -1.1 -2.0 lipopolysaccharide biosynthesis protein RfbH compare
PS417_09725 -1.1 -6.7 transporter compare
PS417_18435 -1.0 -1.9 hypothetical protein compare
PS417_15935 -1.0 -2.6 Rrf2 family transcriptional regulator compare
PS417_04410 -1.0 -1.1 hypothetical protein compare
PS417_13075 -1.0 -2.2 hypothetical protein compare
PS417_04650 -1.0 -1.7 D-alanine--D-alanine ligase compare
PS417_17780 -1.0 -1.5 Ais protein compare
PS417_06100 -1.0 -2.2 SAM-dependent methyltransferase compare
PS417_22570 -0.9 -1.1 H-NS histone compare
PS417_13800 -0.9 -2.2 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_19600 -0.9 -1.2 exonuclease compare
PS417_28085 -0.9 -6.0 phosphate-binding protein compare
PS417_20985 -0.9 -2.6 porin compare
PS417_21705 -0.9 -3.6 arginine N-succinyltransferase compare
PS417_05975 -0.9 -1.0 chemotaxis protein CheW compare
PS417_17240 -0.9 -3.2 trigger factor compare
PS417_13165 -0.9 -1.6 peroxidase compare
PS417_12555 -0.9 -4.4 phosphogluconate 2-dehydrogenase KguD (EC 1.1.1.43) (from data) compare
PS417_00065 -0.9 -1.8 3-methyladenine DNA glycosylase compare
PS417_22565 -0.9 -1.3 formyltetrahydrofolate deformylase compare
PS417_06205 -0.9 -4.8 methionine aminopeptidase compare
PS417_08250 -0.8 -1.9 competence protein ComEA compare
PS417_20045 -0.8 -4.2 threonine-phosphate decarboxylase compare
PS417_02210 -0.8 -4.7 diguanylate cyclase compare
PS417_16510 -0.8 -1.4 Clp protease ClpX compare
PS417_18540 -0.8 -1.9 colicin V production CvpA compare
PS417_07170 -0.8 -4.2 hypothetical protein compare
PS417_28075 -0.8 -2.4 phosphate ABC transporter permease compare
PS417_06685 -0.8 -0.9 beta-ketoadipyl CoA thiolase compare
PS417_16515 -0.8 -2.2 Clp protease ClpS compare
PS417_16555 -0.8 -1.4 cupin compare
PS417_00505 -0.8 -4.5 peptidase M16 compare
PS417_18420 -0.8 -2.1 deoxyribonuclease compare
PS417_12845 -0.8 -2.9 NAD(P)H dehydrogenase compare
PS417_08990 -0.7 -2.5 ABC transporter substrate-binding protein compare
PS417_22445 -0.7 -2.8 ATP-dependent DNA helicase RuvB compare
PS417_04705 -0.7 -2.1 hypothetical protein compare
PS417_27315 -0.7 -1.3 hypothetical protein compare
PS417_26000 -0.7 -4.3 8-amino-7-oxononanoate synthase compare
PS417_25985 -0.7 -1.7 dethiobiotin synthetase compare
PS417_02915 -0.7 -1.9 precorrin-3B C17-methyltransferase compare
PS417_27710 -0.7 -2.5 AsnC family transcriptional regulator compare
PS417_15100 -0.7 -1.4 BatB protein compare
PS417_08545 -0.7 -1.9 aromatic ring-opening dioxygenase LigB compare
PS417_02555 -0.7 -5.7 exoribonuclease R compare
PS417_21850 -0.7 -1.3 LysR family transcriptional regulator compare
PS417_01735 -0.7 -2.6 ABC transporter permease compare
PS417_12755 -0.7 -2.7 RND transporter compare
PS417_08335 -0.7 -1.5 hypothetical protein compare
PS417_17315 -0.7 -4.0 nitrate reductase compare
PS417_01995 -0.7 -1.4 hypothetical protein compare
PS417_05130 -0.7 -2.2 glutaredoxin compare
PS417_13730 -0.7 -1.7 hypothetical protein compare
PS417_01730 -0.7 -3.9 histidine ABC transporter substrate-binding protein compare
PS417_06355 -0.7 -1.4 protein-L-isoaspartate O-methyltransferase compare
PS417_00865 -0.7 -2.8 hypothetical protein compare
PS417_03465 -0.7 -0.9 type III secretion protein compare
PS417_01780 -0.7 -2.9 proline iminopeptidase compare
PS417_05210 -0.6 -3.6 copper oxidase compare
PS417_02560 -0.6 -0.9 23S rRNA methyltransferase compare
PS417_23900 -0.6 -3.2 poly(A) polymerase compare
PS417_05155 -0.6 -2.3 DNA polymerase III subunit chi compare
PS417_19350 -0.6 -3.1 GTP cyclohydrolase compare
PS417_12840 -0.6 -2.0 TetR family transcriptional regulator compare
PS417_08295 -0.6 -1.5 ATPase compare
PS417_01290 -0.6 -0.9 ADP-ribose diphosphatase compare
PS417_06680 -0.6 -4.3 nuclease PIN compare
PS417_17660 -0.6 -4.1 branched-chain amino acid ABC transporter substrate-binding protein compare
PS417_28510 -0.6 -2.6 chromosome partitioning protein compare
PS417_07420 -0.6 -1.9 restriction endonuclease compare
PS417_08245 -0.6 -0.7 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_22660 -0.6 -1.5 hypothetical protein compare
PS417_08580 -0.6 -3.8 histidine kinase compare
PS417_16100 -0.6 -2.7 antibiotic biosynthesis monooxygenase compare
PS417_04270 -0.6 -2.5 ribonuclease G compare
PS417_27515 -0.6 -1.9 heme biosynthesis protein HemY compare
PS417_03430 -0.6 -2.0 methyltransferase type 11 compare
PS417_27475 -0.6 -1.6 membrane protein compare
PS417_24935 -0.6 -0.9 hypothetical protein compare
PS417_17670 -0.6 -2.6 ABC transporter permease compare
PS417_21050 -0.6 -3.8 serine acetyltransferase compare
PS417_24570 -0.6 -2.3 AsnC family transcriptional regulator compare
PS417_26900 -0.6 -1.1 L-cystine transporter tcyP compare
PS417_26815 -0.6 -1.4 peptidase M16 compare
PS417_07565 -0.6 -1.4 hypothetical protein compare
PS417_11945 -0.6 -1.1 hypothetical protein compare
PS417_18440 -0.6 -2.6 hypothetical protein compare
PS417_10810 -0.6 -1.6 hypothetical protein compare
PS417_17505 -0.6 -1.7 LuxR family transcriptional regulator compare
PS417_15005 -0.6 -2.1 hypothetical protein compare
PS417_12190 -0.6 -2.0 microcin ABC transporter ATP-binding protein compare
PS417_04230 -0.6 -2.6 lipoprotein compare
PS417_00475 -0.6 -2.2 membrane protein compare


Specific Phenotypes

For 10 genes in this experiment

For nitrogen source Uridine in Pseudomonas simiae WCS417

For nitrogen source Uridine across organisms