Experiment set5IT087 for Ralstonia solanacearum PSI07
water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
Group: survivalMedia: Water + Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days
Culturing: RalstoniaPSI07_ML2, flask, Aerobic, at 28 (C)
By: Brian Ingel on 5-Nov-21
Specific Phenotypes
For 9 genes in this experiment
For survival Treatment=watercosm; Collection=outgrowth_in_CPG; Time=180_days across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Copper homeostasis | 2 |
| Terminal cytochrome C oxidases | 2 |
| High affinity phosphate transporter and control of PHO regulon | 1 |
| Phosphate metabolism | 1 |
| Thioredoxin-disulfide reductase | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| arsenite to oxygen electron transfer | 2 | 2 | 1 |
| arsenite to oxygen electron transfer (via azurin) | 3 | 2 | 1 |
| aerobic respiration I (cytochrome c) | 4 | 3 | 1 |
| aerobic respiration II (cytochrome c) (yeast) | 4 | 2 | 1 |
| Fe(II) oxidation | 6 | 2 | 1 |
| peptidoglycan recycling II | 10 | 8 | 1 |
| peptidoglycan recycling I | 14 | 10 | 1 |