Experiment set5IT087 for Pseudomonas putida KT2440

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p-Coumaric acid carbon source

200 most important genes:

  gene name fitness t score description  
PP_3952 -6.9 -4.8 3-oxoadipate CoA-transferase subunit A conserved
PP_0293 -6.9 -4.7 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0290 -6.7 -6.5 Imidazole glycerol phosphate synthase subunit HisH compare
PP_3357 -6.3 -6.1 p-hydroxybenzaldehyde dehydrogenase vdh (EC 1.2.1.64) (from data) conserved
PP_1377 -6.3 -6.1 beta-ketoadipyl-CoA thiolase conserved
PP_3951 -6.3 -7.5 3-oxoadipate CoA-transferase subunit A compare
PP_4679 -6.2 -4.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5015 -6.2 -4.3 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_3511 -6.0 -8.2 Branched-chain-amino-acid aminotransferase compare
PP_4680 -5.9 -9.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0966 -5.9 -10.5 Histidinol dehydrogenase compare
PP_5014 -5.9 -4.0 Phosphoribosyl-AMP cyclohydrolase compare
PP_5098 -5.8 -7.0 methionine biosynthesis protein MetW compare
PP_5185 -5.8 -8.0 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0422 -5.8 -6.9 Indole-3-glycerol phosphate synthase compare
PP_0691 -5.8 -6.9 Glutamate 5-kinase compare
PP_0967 -5.8 -11.0 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0083 -5.7 -6.8 tryptophan synthase beta chain compare
PP_2001 -5.6 -10.8 O-succinylhomoserine sulfhydrylase compare
PP_1986 -5.6 -3.8 3-isopropylmalate dehydratase small subunit compare
PP_1988 -5.6 -9.3 3-isopropylmalate dehydrogenase compare
PP_1995 -5.6 -9.3 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_4678 -5.5 -14.7 Ketol-acid reductoisomerase compare
PP_1985 -5.5 -6.5 3-isopropylmalate dehydratase large subunit compare
PP_3358 -5.4 -9.7 hydroxycinnamoyl-CoA hydratase-lyase (EC 4.1.2.61) (from data) compare
PP_1379 -5.4 -7.4 3-carboxy-cis,cis-muconate cycloisomerase compare
PP_0420 -5.4 -11.5 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5289 -5.4 -7.4 Acetylglutamate kinase compare
PP_4799 -5.3 -3.7 putative Muramoyltetrapeptide carboxypeptidase compare
PP_0184 -5.3 -10.2 Argininosuccinate lyase compare
PP_3356 -5.3 -17.6 p-coumarate CoA-ligase (EC 6.2.1.12) (from data) conserved
PP_0082 -5.3 -7.2 tryptophan synthase alpha chain compare
PP_1079 -5.2 -7.9 Ornithine carbamoyltransferase compare
PP_4909 -5.1 -9.8 phosphoserine phosphatase compare
PP_1088 -5.0 -16.1 Argininosuccinate synthase compare
PP_1381 -5.0 -2.4 4-carboxymuconolactone decarboxylase compare
PP_1375 -5.0 -15.8 transcription regulatory protein (pca regulon) compare
PP_0289 -5.0 -10.1 Imidazoleglycerol-phosphate dehydratase compare
PP_0417 -4.9 -20.0 Anthranilate synthase component 1 compare
PP_5097 -4.8 -16.2 homoserine O-acetyltransferase compare
PP_1025 -4.6 -14.3 2-isopropylmalate synthase compare
PP_0421 -4.6 -9.0 Anthranilate phosphoribosyltransferase compare
PP_2168 -4.6 -13.5 Transaldolase compare
PP_2371 -4.5 -7.5 Sulphite reductase hemoprotein, beta subunit compare
PP_4890 -4.5 -7.4 ATP phosphoribosyltransferase regulatory subunit compare
PP_0965 -4.4 -10.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_3999 -4.4 -8.4 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4724 -4.4 -3.0 Carbamoyl-phosphate synthase small chain compare
PP_1380 -4.3 -7.0 3-oxoadipate enol-lactonase 2 conserved
PP_5128 -4.3 -9.9 Dihydroxy-acid dehydratase compare
PP_4655 -4.2 -12.1 protocatechuate 3,4-dioxygenase alpha chain conserved
PP_4696 -4.2 -8.5 Nitrogen regulation protein NR(I) compare
PP_4656 -4.2 -10.0 protocatechuate 3,4-dioxygenase beta chain compare
PP_4723 -4.1 -7.9 Carbamoyl-phosphate synthase large chain compare
PP_5155 -4.1 -6.8 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4700 -4.0 -5.5 pantothenate synthetase compare
PP_4999 -3.9 -2.7 dihydroorotase-like protein compare
PP_5303 -3.9 -6.9 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_1664 -3.7 -6.6 phosphoribosylglycinamide formyltransferase 1 compare
PP_3537 -3.6 -11.6 p-hydroxybenzoate hydroxylase conserved
PP_5095 -3.5 -4.1 pyrroline-5-carboxylate reductase compare
PP_2327 -3.4 -8.1 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_5075 -3.3 -15.7 glutamate synthase (NADPH) beta subunit compare
PP_3538 -3.2 -12.4 transcriptional regulator conserved
PP_1713 -3.2 -2.2 Transcriptional regulator PcaQ compare
PP_4693 -3.1 -8.5 RNA polymerase-binding transcription factor DksA compare
PP_0292 -3.0 -2.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4058 -3.0 -14.5 1,4-alpha-glucan branching enzyme compare
PP_0339 -2.6 -4.0 Pyruvate dehydrogenase E1 component compare
PP_2328 -2.6 -7.3 Phosphoadenosine phosphosulfate reductase compare
PP_1656 -2.6 -5.3 ATP:GTP 3'-pyrophosphotransferase compare
PP_5076 -2.5 -14.9 L-glutamate synthase(NADPH) alpha subunit compare
PP_0393 -2.5 -4.7 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4126 -2.4 -3.6 NADH-quinone oxidoreductase subunit I compare
PP_0760 -2.4 -3.4 conserved membrane protein of unknown function compare
PP_2388 -2.3 -6.1 Transporter, LysE family compare
PP_0368 -2.3 -11.1 putative Acyl-CoA dehydrogenase compare
PP_1110 -2.3 -4.8 serine acetyltransferase compare
PP_3790 -2.1 -10.2 diaminopimelate epimerase compare
PP_2000 -2.1 -3.7 amidophosphoribosyl transferase compare
PP_0356 -2.0 -7.2 malate synthase G compare
PP_1589 -2.0 -8.7 uridylyltransferase compare
PP_4131 -2.0 -8.1 NADH-quinone oxidoreductase subunit N compare
PP_4964 -2.0 -4.7 D-erythrose 4-phosphate dehydrogenase compare
PP_0291 -2.0 -2.3 conserved protein of unknown function compare
PP_4874 -1.9 -2.5 50S ribosomal protein L9 compare
PP_1109 -1.9 -10.9 Transcriptional regulator, GntR family compare
PP_3590 -1.9 -7.5 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_4120 -1.8 -5.6 NADH-quinone oxidoreductase subunit B compare
PP_5347 -1.7 -8.8 pyruvate carboxylase subunit A compare
PP_0833 -1.7 -3.1 queuine tRNA-ribosyltransferase compare
PP_5227 -1.7 -7.6 diaminopimelate decarboxylase compare
PP_4902 -1.7 -4.3 Oligoribonuclease compare
PP_1654 -1.6 -4.1 cysteine synthase B compare
PP_3903 -1.6 -2.3 conserved protein of unknown function compare
PP_4937 -1.6 -5.6 toluene tolerance protein compare
PP_4121 -1.6 -6.9 NADH-quinone oxidoreductase subunit C/D compare
PP_1378 -1.6 -5.5 alpha-ketoglutarate permease compare
PP_2370 -1.5 -2.6 conserved protein of unknown function compare
PP_2356 -1.5 -9.0 putative Phytochrome family protein compare
PP_5216 -1.5 -2.3 exopolyphosphatase compare
PP_0428 -1.5 -7.5 aminoacyl-adenylate hydrolase/purine nucleoside phosphoramidase compare
PP_0961 -1.5 -7.7 toluene tolerance protein compare
PP_0958 -1.5 -5.9 phospholipid ABC transporter ATP-binding subunit compare
PP_1111 -1.5 -4.3 putative Synthetase compare
PP_2433 -1.5 -1.5 conserved protein of unknown function compare
PP_4546 -1.5 -5.4 ATP-dependent helicase HrpA compare
PP_4122 -1.5 -2.5 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4124 -1.4 -5.9 NADH-quinone oxidoreductase subunit G compare
PP_1216 -1.4 -2.8 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_0513 -1.4 -3.8 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_0406 -1.4 -2.8 Nucleotidyltransferase family protein compare
PP_3662 -1.4 -7.5 conserved protein of unknown function compare
PP_2390 -1.3 -7.4 Transcriptional regulator, LysR family compare
PP_4129 -1.3 -4.1 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4004 -1.3 -5.1 DNA translocase FtsK compare
PP_1468 -1.3 -2.1 Tyrosine recombinase XerD compare
PP_4695 -1.3 -6.6 Sensory box histidine kinase compare
PP_1304 -1.3 -7.2 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_0960 -1.3 -5.5 phospholipid ABC transporter binding protein compare
PP_4699 -1.3 -3.9 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_0949 -1.2 -6.0 putative ATP-binding protein UPF0042 compare
PP_0980 -1.2 -6.0 Probable cytosol aminopeptidase compare
PP_5035 -1.2 -6.3 Histidine utilization repressor compare
PP_4247 -1.2 -2.5 Exonuclease compare
PP_5230 -1.2 -4.1 Tyrosine recombinase XerC compare
PP_2354 -1.2 -6.9 Sensory box histidine kinase/response regulator compare
PP_1237 -1.2 -3.0 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_5346 -1.2 -5.8 pyruvate carboxylase subunit B compare
PP_2136 -1.2 -3.6 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_4988 -1.2 -5.9 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_4681 -1.2 -3.5 conserved protein of unknown function compare
PP_2324 -1.2 -5.6 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_1214 -1.1 -2.4 putative transcriptional regulatory protein compare
PP_1075 -1.1 -6.9 glycerol kinase compare
PP_1789 -1.1 -4.4 Hydrolase, haloacid dehalogenase-like family compare
PP_5028 -1.1 -4.0 proline iminopeptidase compare
PP_1303 -1.1 -5.0 Sulfate adenylyltransferase subunit 2 compare
PP_4993 -1.1 -4.7 Glutathione synthetase compare
PP_5217 -1.1 -7.4 Polyphosphate kinase compare
PP_2429 -1.1 -2.6 putative Membrane protein compare
PP_1076 -1.1 -5.3 aquaglyceroporin compare
PP_2163 -1.1 -6.1 VacJ lipoprotein compare
PP_3105 -1.1 -3.0 conserved membrane protein of unknown function compare
PP_5048 -1.1 -4.6 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_5329 -1.1 -3.2 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_5348 -1.1 -5.3 Transcriptional regulator, LysR family compare
PP_0832 -1.1 -3.0 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_4989 -1.1 -2.6 Protein PilJ compare
PP_4271 -1.1 -1.4 conserved protein of unknown function compare
PP_4130 -1.0 -3.9 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_1826 -1.0 -2.5 Hydrolase, isochorismatase family compare
PP_5085 -1.0 -5.5 malic enzyme B compare
PP_2402 -1.0 -1.9 putative Sensor histidine kinase compare
PP_4481 -1.0 -5.0 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_3850 -1.0 -4.3 conserved protein of unknown function compare
PP_t29 -1.0 -1.6 tRNA-Ala compare
PP_3035 -1.0 -2.4 conserved protein of unknown function compare
PP_4804 -1.0 -3.2 RlpA-like lipoprotein compare
PP_0381 -1.0 -5.5 Coenzyme PQQ synthesis protein F compare
PP_2575 -1.0 -1.6 conserved exported protein of unknown function compare
PP_4895 -0.9 -2.7 tRNA dimethylallyltransferase compare
PP_3926 -0.9 -1.9 short-chain dehydrogenase compare
PP_0913 -0.9 -4.7 conserved exported protein of unknown function compare
PP_0959 -0.9 -2.6 phospholipid ABC transporter compare
PP_4593 -0.9 -1.8 conserved protein of unknown function compare
PP_0273 -0.9 -1.9 conserved protein of unknown function compare
PP_1994 -0.9 -2.2 tRNA pseudouridine (38-40)synthase compare
PP_1733 -0.9 -2.5 membrane ATPase of the MinC-MinD-MinE system compare
PP_1384 -0.9 -5.5 Probable efflux pump outer membrane protein TtgC compare
PP_1097 -0.9 -1.6 Methionine--tRNA ligase compare
PP_2378 -0.8 -2.2 Fe/S biogenesis protein NfuA compare
PP_0122 -0.8 -1.8 conserved exported protein of unknown function compare
PP_0063 -0.8 -4.2 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_1366 -0.8 -0.7 Transcriptional regulator MvaT, P16 subunit compare
PP_2181 -0.8 -2.5 Transcriptional regulator, Cro/CI family compare
PP_2899 -0.8 -1.6 conserved exported protein of unknown function compare
PP_4966 -0.8 -1.8 transcriptional regulator of methionine metabolism compare
PP_0127 -0.8 -2.7 Thiol:disulfide interchange protein compare
PP_5628 -0.8 -2.4 conserved protein of unknown function compare
PP_3892 -0.8 -1.2 conserved protein of unknown function compare
PP_4722 -0.8 -3.4 Transcription elongation factor GreA compare
PP_4917 -0.8 -2.6 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_1568 -0.8 -1.1 conserved protein of unknown function compare
PP_3789 -0.8 -4.3 putative Efflux transporter compare
PP_0125 -0.8 -2.6 putative cytochrome c-type protein compare
PP_0910 -0.8 -4.0 conserved exported protein of unknown function compare
PP_0937 -0.8 -3.8 endoribonuclease G (RNAse G) compare
PP_1217 -0.8 -3.7 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_2928 -0.8 -4.5 Saccharopine dehydrogenase compare
PP_4875 -0.7 -2.6 conserved membrane protein of unknown function compare
PP_5229 -0.7 -2.5 conserved protein of unknown function compare
PP_5058 -0.7 -3.8 Carboxy-terminal-processing protease compare
PP_0547 -0.7 -3.1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_0002 -0.7 -4.1 probable chromosome partition protein compare
PP_0261 -0.7 -3.6 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_0236 -0.7 -2.1 NAD(P)H-dependent FMN reductase subunit compare
PP_2088 -0.7 -2.0 RNA polymerase sigma factor SigX compare
PP_1208 -0.7 -2.2 conserved protein of unknown function, SlyX family compare
PP_5198 -0.7 -2.5 conserved protein of unknown function compare


Specific Phenotypes

For 13 genes in this experiment

For carbon source p-Coumaric acid in Pseudomonas putida KT2440

For carbon source p-Coumaric acid across organisms