Experiment set5IT086 for Pseudomonas putida KT2440

Compare to:

Vanillin carbon source

200 most important genes:

  gene name fitness t score description  
PP_3829 -6.9 -4.7 Molybdenum transport system permease protein ModB compare
PP_5289 -6.4 -6.3 Acetylglutamate kinase compare
PP_4890 -6.4 -4.4 ATP phosphoribosyltransferase regulatory subunit compare
PP_0292 -6.4 -4.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_1292 -6.0 -8.2 Cyclic pyranopterin monophosphate synthase accessory protein compare
PP_1088 -5.9 -14.3 Argininosuccinate synthase compare
PP_5014 -5.9 -4.1 Phosphoribosyl-AMP cyclohydrolase compare
PP_0184 -5.9 -9.0 Argininosuccinate lyase compare
PP_0422 -5.8 -6.9 Indole-3-glycerol phosphate synthase compare
PP_1379 -5.8 -6.9 3-carboxy-cis,cis-muconate cycloisomerase compare
PP_5185 -5.8 -7.9 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_1995 -5.7 -9.6 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0082 -5.7 -5.5 tryptophan synthase alpha chain compare
PP_2168 -5.6 -12.0 Transaldolase compare
PP_0846 -5.6 -3.8 DnaK-like molecular chaperone specific for IscU compare
PP_4656 -5.6 -8.5 protocatechuate 3,4-dioxygenase beta chain compare
PP_3951 -5.6 -7.2 3-oxoadipate CoA-transferase subunit A compare
PP_1377 -5.5 -8.4 beta-ketoadipyl-CoA thiolase compare
PP_5303 -5.5 -7.5 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0967 -5.5 -11.7 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0420 -5.4 -11.6 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4678 -5.4 -14.9 Ketol-acid reductoisomerase compare
PP_1380 -5.4 -7.4 3-oxoadipate enol-lactonase 2 compare
PP_0691 -5.4 -7.3 Glutamate 5-kinase compare
PP_0966 -5.4 -12.0 Histidinol dehydrogenase compare
PP_0965 -5.4 -10.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5097 -5.3 -14.9 homoserine O-acetyltransferase compare
PP_3736 -5.3 -11.3 vanillate O-demethylase oxygenase subunit compare
PP_4993 -5.2 -7.1 Glutathione synthetase compare
PP_3952 -5.2 -11.0 3-oxoadipate CoA-transferase subunit A compare
PP_1988 -5.2 -10.5 3-isopropylmalate dehydrogenase compare
PP_4680 -5.2 -15.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0293 -5.1 -4.2 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1985 -5.0 -6.8 3-isopropylmalate dehydratase large subunit compare
PP_1375 -5.0 -15.9 transcription regulatory protein (pca regulon) compare
PP_2001 -5.0 -12.4 O-succinylhomoserine sulfhydrylase compare
PP_0290 -5.0 -10.6 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0417 -5.0 -19.2 Anthranilate synthase component 1 compare
PP_3999 -4.9 -5.9 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_3662 -4.9 -10.0 conserved protein of unknown function compare
PP_1079 -4.9 -8.1 Ornithine carbamoyltransferase compare
PP_2371 -4.9 -7.4 Sulphite reductase hemoprotein, beta subunit compare
PP_4909 -4.9 -9.9 phosphoserine phosphatase compare
PP_1075 -4.9 -14.3 glycerol kinase compare
PP_2327 -4.9 -8.7 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_0421 -4.8 -10.4 Anthranilate phosphoribosyltransferase compare
PP_0083 -4.8 -9.1 tryptophan synthase beta chain compare
PP_1654 -4.7 -4.6 cysteine synthase B compare
PP_2123 -4.7 -12.5 molybdenum::molybdopterin ligase compare
PP_4799 -4.7 -5.6 putative Muramoyltetrapeptide carboxypeptidase compare
PP_3511 -4.7 -10.8 Branched-chain-amino-acid aminotransferase compare
PP_4696 -4.7 -8.4 Nitrogen regulation protein NR(I) compare
PP_4058 -4.6 -13.7 1,4-alpha-glucan branching enzyme compare
PP_3737 -4.6 -11.1 vanillate O-demethylase oxidoreductase compare
PP_4724 -4.4 -3.0 Carbamoyl-phosphate synthase small chain compare
PP_4655 -4.4 -9.1 protocatechuate 3,4-dioxygenase alpha chain compare
PP_2370 -4.4 -5.1 conserved protein of unknown function compare
PP_5098 -4.4 -10.5 methionine biosynthesis protein MetW compare
PP_5128 -4.3 -9.5 Dihydroxy-acid dehydratase compare
PP_1233 -4.3 -6.3 sulfurtransferase compare
PP_4679 -4.3 -8.1 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5095 -4.3 -4.1 pyrroline-5-carboxylate reductase compare
PP_0719 -4.3 -4.1 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_1713 -4.2 -2.5 Transcriptional regulator PcaQ compare
PP_0368 -4.2 -10.9 putative Acyl-CoA dehydrogenase compare
PP_1294 -4.1 -7.6 molybdopterin synthase large subunit compare
PP_5015 -4.1 -6.7 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_3828 -4.1 -11.3 Molybdate-binding periplasmic protein compare
PP_0289 -4.0 -7.6 Imidazoleglycerol-phosphate dehydratase compare
PP_4723 -4.0 -9.0 Carbamoyl-phosphate synthase large chain compare
PP_4999 -3.9 -2.7 dihydroorotase-like protein compare
PP_4693 -3.8 -8.1 RNA polymerase-binding transcription factor DksA compare
PP_1293 -3.8 -3.3 molybdopterin synthase small subunit compare
PP_1025 -3.8 -11.5 2-isopropylmalate synthase compare
PP_4902 -3.7 -5.1 Oligoribonuclease compare
PP_1381 -3.7 -2.3 4-carboxymuconolactone decarboxylase compare
PP_1304 -3.7 -12.7 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_0735 -3.5 -2.1 molybdopterin-synthase adenylyltransferase compare
PP_5155 -3.5 -5.2 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_5217 -3.5 -14.9 Polyphosphate kinase compare
PP_3621 -3.5 -7.7 vanillin dehydrogenase, iorA-like component (from data) compare
PP_0958 -3.5 -9.5 phospholipid ABC transporter ATP-binding subunit compare
PP_4515 -3.5 -9.3 Transcriptional regulator, MarR family compare
PP_4342 -3.5 -8.0 flagellar synthesis regulator, putative ATPase compare
PP_0856 -3.5 -8.5 conserved lipoprotein of unknown function compare
PP_2328 -3.5 -7.2 Phosphoadenosine phosphosulfate reductase compare
PP_0760 -3.4 -5.4 conserved membrane protein of unknown function compare
PP_4964 -3.4 -6.8 D-erythrose 4-phosphate dehydrogenase compare
PP_4131 -3.4 -8.9 NADH-quinone oxidoreductase subunit N compare
PP_1656 -3.3 -9.3 ATP:GTP 3'-pyrophosphotransferase compare
PP_0393 -3.3 -5.4 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_3622 -3.3 -15.5 vanillin dehydrogenase, iorB-like component (from data) compare
PP_0959 -3.3 -4.2 phospholipid ABC transporter compare
PP_1076 -3.2 -9.6 aquaglyceroporin compare
PP_0406 -3.2 -4.8 Nucleotidyltransferase family protein compare
PP_1986 -3.2 -4.2 3-isopropylmalate dehydratase small subunit compare
PP_4121 -3.1 -9.1 NADH-quinone oxidoreductase subunit C/D compare
PP_4937 -3.1 -7.2 toluene tolerance protein compare
PP_2163 -3.1 -10.8 VacJ lipoprotein compare
PP_0962 -3.1 -4.9 toluene-tolerance protein compare
PP_3830 -3.1 -10.7 Molybdenum import ATP-binding protein ModC compare
PP_0339 -3.1 -3.0 Pyruvate dehydrogenase E1 component compare
PP_1616 -3.0 -12.0 formaldehyde dehydrogenase, glutathione-dependent compare
PP_4120 -3.0 -6.9 NADH-quinone oxidoreductase subunit B compare
PP_0961 -3.0 -9.8 toluene tolerance protein compare
PP_2820 -3.0 -2.8 HTH-type transcriptional regulator nfxB compare
PP_1303 -3.0 -8.4 Sulfate adenylyltransferase subunit 2 compare
PP_4597 -2.9 -5.7 Cyclic pyranopterin monophosphate synthase compare
PP_0547 -2.9 -6.5 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_5161 -2.9 -7.3 putative lysophospholipase compare
PP_4129 -2.8 -6.6 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_0960 -2.7 -6.6 phospholipid ABC transporter binding protein compare
PP_2136 -2.7 -6.3 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_4130 -2.7 -5.7 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_1428 -2.7 -3.9 Sigma factor AlgU negative regulatory protein compare
PP_5146 -2.6 -11.4 RNA pyrophosphohydrolase compare
PP_0949 -2.6 -8.8 putative ATP-binding protein UPF0042 compare
PP_0291 -2.6 -3.0 conserved protein of unknown function compare
PP_4231 -2.5 -7.8 putative Xanthine dehydrogenase accessory factor compare
PP_4124 -2.5 -8.2 NADH-quinone oxidoreductase subunit G compare
PP_3590 -2.5 -7.9 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_1764 -2.4 -4.3 Phosphoglycolate phosphatase 2 compare
PP_3456 -2.4 -8.9 Multidrug resistance protein MexB compare
PP_2000 -2.4 -3.5 amidophosphoribosyl transferase compare
PP_4700 -2.4 -5.9 pantothenate synthetase compare
PP_3455 -2.3 -6.0 Multidrug efflux RND membrane fusion protein compare
PP_4122 -2.2 -3.3 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4695 -2.2 -8.5 Sensory box histidine kinase compare
PP_4099 -2.2 -10.0 two-componenent system BarA/UvrY - regulatory subunit compare
PP_2433 -2.2 -2.9 conserved protein of unknown function compare
PP_4098 -2.1 -4.6 UvrABC system protein C compare
PP_3105 -2.0 -2.9 conserved membrane protein of unknown function compare
PP_3623 -2.0 -12.2 vanillin dehydrogenase, cytochrome c component (from data) compare
PP_2402 -2.0 -2.6 putative Sensor histidine kinase compare
PP_4994 -2.0 -6.9 conserved protein of unknown function compare
PP_1719 -1.9 -12.4 Tail-specific protease prc compare
PP_3946 -1.9 -2.8 HTH-type transcriptional repressor NicR compare
PP_1387 -1.9 -2.5 Probable HTH-type transcriptional regulator TtgR compare
PP_5232 -1.9 -3.3 conserved protein of unknown function compare
PP_2217 -1.9 -4.8 enoyl-CoA hydratase compare
PP_1650 -1.9 -6.3 Sensor protein GacS compare
PP_5227 -1.9 -9.1 diaminopimelate decarboxylase compare
PP_1468 -1.9 -3.5 Tyrosine recombinase XerD compare
PP_0164 -1.8 -4.7 conserved protein of unknown function compare
PP_1615 -1.8 -9.2 Transcriptional regulator, LysR family compare
PP_1198 -1.8 -2.2 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_2122 -1.8 -4.1 molybdenum cofactor biosynthesis protein B compare
PP_0127 -1.7 -4.0 Thiol:disulfide interchange protein compare
PP_4895 -1.7 -4.2 tRNA dimethylallyltransferase compare
PP_0346 -1.6 -8.3 putative Heptose kinase WapQ compare
PP_t49 -1.6 -3.2 tRNA-Met compare
PP_1789 -1.6 -5.9 Hydrolase, haloacid dehalogenase-like family compare
PP_4943 -1.6 -3.1 putative Glycosyl transferase compare
PP_2356 -1.6 -9.9 putative Phytochrome family protein compare
PP_5075 -1.6 -8.5 glutamate synthase (NADPH) beta subunit compare
PP_1826 -1.6 -3.0 Hydrolase, isochorismatase family compare
PP_4265 -1.6 -4.1 DNA-binding transcriptional dual regulator compare
PP_4126 -1.6 -3.0 NADH-quinone oxidoreductase subunit I compare
PP_5084 -1.6 -10.6 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_5216 -1.6 -3.0 exopolyphosphatase compare
PP_3286 -1.6 -6.9 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_3603 -1.5 -7.7 Transcriptional regulator, GntR family compare
PP_3493 -1.5 -7.9 Transcriptional regulator, LysR family compare
PP_0848 -1.5 -3.1 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_1994 -1.5 -4.5 tRNA pseudouridine (38-40)synthase compare
PP_1589 -1.5 -7.5 uridylyltransferase compare
PP_0138 -1.5 -7.3 conserved membrane protein of unknown function compare
PP_0621 -1.5 -4.8 conserved protein of unknown function compare
PP_1493 -1.5 -3.2 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_3248 -1.5 -4.6 Dyp-type peroxidase family protein compare
PP_1232 -1.4 -6.8 conserved exported protein of unknown function compare
PP_0980 -1.4 -6.8 Probable cytosol aminopeptidase compare
PP_5329 -1.4 -4.1 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_4726 -1.4 -2.9 Chaperone protein DnaJ compare
PP_1208 -1.4 -3.8 conserved protein of unknown function, SlyX family compare
PP_4880 -1.4 -10.4 exoribonuclease R compare
PP_1598 -1.4 -6.2 regulatory intramembrane protein RIP zinc protease compare
PP_0888 -1.4 -3.5 Photosynthetic apparatus regulatory protein RegA compare
PP_0937 -1.4 -5.3 endoribonuclease G (RNAse G) compare
PP_1898 -1.3 -3.6 MotA/TolQ/ExbB proton channel family protein compare
PP_4370 -1.3 -3.9 Flagellar hook-basal body complex protein FliE compare
PP_1236 -1.3 -5.8 putative Glycine cleavage system transcriptional repressor compare
PP_1215 -1.3 -2.2 Crossover junction endodeoxyribonuclease RuvC compare
PP_1217 -1.3 -5.4 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_5093 -1.3 -1.8 twitching motility protein compare
PP_3819 -1.2 -7.8 glutathione reductase (NADPH) compare
PP_0914 -1.2 -6.8 GGDEF domain protein compare
PP_2302 -1.2 -4.9 DNA-binding, ATP-dependent protease compare
PP_5230 -1.2 -4.4 Tyrosine recombinase XerC compare
PP_4699 -1.2 -4.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_5076 -1.2 -9.1 L-glutamate synthase(NADPH) alpha subunit compare
PP_1378 -1.2 -4.4 alpha-ketoglutarate permease compare
PP_1655 -1.2 -3.3 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_0910 -1.2 -6.0 conserved exported protein of unknown function compare
PP_4341 -1.2 -5.0 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_0881 -1.2 -4.2 dipeptide ABC transporter - putative membrane subunit compare
PP_4343 -1.2 -4.1 Flagellar biosynthesis protein FlhF compare
PP_2142 -1.2 -2.8 Cell division inhibitor SulA compare
PP_4622 -1.2 -4.6 Hmg transcriptional repressor compare
PP_0909 -1.1 -6.1 conserved exported protein of unknown function compare


Specific Phenotypes

For 29 genes in this experiment

For carbon source Vanillin in Pseudomonas putida KT2440

For carbon source Vanillin across organisms