Experiment set5IT085 for Pseudomonas simiae WCS417

Compare to:

Adenosine nitrogen source

200 most important genes:

  gene name fitness t score description  
PS417_18600 -7.5 -5.1 isopropylmalate isomerase compare
PS417_04415 -6.9 -8.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_02005 -5.9 -13.8 glutamate synthase compare
PS417_23800 -5.6 -12.5 ketol-acid reductoisomerase compare
PS417_23545 -5.6 -6.6 gamma-glutamyl kinase compare
PS417_18530 -5.5 -7.9 O-succinylhomoserine sulfhydrylase compare
PS417_18595 -5.3 -5.0 3-isopropylmalate dehydratase compare
PS417_04420 -5.3 -12.9 histidinol dehydrogenase compare
PS417_18560 -5.2 -12.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_01575 -5.2 -4.6 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_25720 -5.1 -9.8 anthranilate synthase component II compare
PS417_23810 -5.1 -12.4 acetolactate synthase 3 catalytic subunit compare
PS417_26740 -5.1 -13.9 homoserine acetyltransferase compare
PS417_02000 -5.0 -15.5 glutamate synthase compare
PS417_16465 -5.0 -14.4 sirohydrochlorin ferrochelatase compare
PS417_25725 -5.0 -16.3 anthranilate synthase component I compare
PS417_01855 -4.9 -5.2 phosphoribosyl-AMP cyclohydrolase compare
PS417_12855 -4.9 -7.4 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_27795 -4.9 -1.9 orotate phosphoribosyltransferase compare
PS417_18585 -4.8 -9.1 3-isopropylmalate dehydrogenase compare
PS417_02510 -4.7 -4.4 ATP phosphoribosyltransferase regulatory subunit compare
PS417_27040 -4.6 -2.8 3-phosphoglycerate dehydrogenase compare
PS417_00185 -4.5 -6.7 tryptophan synthase subunit beta compare
PS417_22690 -4.4 -6.2 phosphogluconate dehydratase compare
PS417_01850 -4.3 -12.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_23995 -4.2 -1.7 preprotein translocase subunit SecG compare
PS417_00180 -4.2 -4.7 tryptophan synthase subunit alpha compare
PS417_24745 -4.2 -3.9 gamma-glutamyl phosphate reductase compare
PS417_25710 -4.1 -2.3 indole-3-glycerol-phosphate synthase compare
PS417_23805 -4.1 -8.1 acetolactate synthase 3 regulatory subunit compare
PS417_26745 -4.1 -4.5 methionine biosynthesis protein MetW compare
PS417_05595 -4.1 -7.5 ornithine carbamoyltransferase compare
PS417_01565 -4.0 -3.9 imidazole glycerol phosphate synthase compare
PS417_08125 -3.8 -2.6 prephenate dehydratase compare
PS417_24155 -3.8 -2.6 ATP-binding protein compare
PS417_27835 -3.8 -8.3 endoribonuclease compare
PS417_27195 -3.7 -1.8 N-acetylglutamate synthase compare
PS417_01580 -3.6 -1.7 imidazole glycerol phosphate synthase compare
PS417_12290 -3.6 -8.3 sulfite reductase compare
PS417_26890 -3.5 -7.1 dihydroxy-acid dehydratase compare
PS417_01560 -3.4 -4.6 imidazoleglycerol-phosphate dehydratase compare
PS417_12310 -3.4 -14.8 methionine synthase compare
PS417_25715 -3.1 -5.3 anthranilate phosphoribosyltransferase compare
PS417_27305 -3.1 -8.8 5-formyltetrahydrofolate cyclo-ligase compare
PS417_23110 -3.1 -5.9 2-isopropylmalate synthase compare
PS417_23770 -3.0 -4.5 exodeoxyribonuclease V subunit alpha compare
PS417_26730 -3.0 -1.7 pyrroline-5-carboxylate reductase compare
PS417_01635 -3.0 -9.3 nitrogen regulation protein NR(I) compare
PS417_26995 -2.9 -8.4 phosphoserine phosphatase compare
PS417_26510 -2.9 -12.8 5,10-methylenetetrahydrofolate reductase compare
PS417_02555 -2.8 -13.6 exoribonuclease R compare
PS417_02415 -2.7 -3.9 phosphoserine phosphatase compare
PS417_20160 -2.7 -4.5 cysteine synthase compare
PS417_06375 -2.7 -2.1 deoxycytidine triphosphate deaminase compare
PS417_28220 -2.7 -3.0 LysR family transcriptional regulator compare
PS417_01605 -2.7 -2.3 phosphoglycerate mutase compare
PS417_12325 -2.5 -9.6 precorrin-4 C11-methyltransferase compare
PS417_20985 -2.4 -4.6 porin compare
PS417_27800 -2.4 -7.7 exodeoxyribonuclease III compare
PS417_20025 -2.4 -2.8 alpha-ribazole phosphatase compare
PS417_20040 -2.3 -8.8 cobyric acid synthase compare
PS417_02915 -2.3 -6.6 precorrin-3B C17-methyltransferase conserved
PS417_11405 -2.1 -6.2 precorrin 6A synthase compare
PS417_20050 -2.1 -9.8 cobalamin biosynthesis protein CobD conserved
PS417_20045 -2.0 -8.3 threonine-phosphate decarboxylase conserved
PS417_12350 -1.9 -11.1 cobalamin biosynthesis protein CobN conserved
PS417_02910 -1.8 -7.6 precorrin-2 C20-methyltransferase conserved
PS417_02890 -1.8 -5.3 cobalt-precorrin-6X reductase compare
PS417_12345 -1.8 -4.8 cobalamin biosynthesis protein CobW compare
PS417_20035 -1.8 -8.1 adenosylcobinamide kinase compare
PS417_20060 -1.8 -10.3 cobyrinic acid a,c-diamide synthase conserved
PS417_06685 -1.8 -1.6 beta-ketoadipyl CoA thiolase compare
PS417_08105 -1.8 -12.6 N-ethylammeline chlorohydrolase conserved
PS417_12355 -1.8 -3.1 magnesium chelatase compare
PS417_16735 -1.7 -4.9 aldehyde dehydrogenase compare
PS417_20020 -1.7 -8.8 cobalamin synthase compare
PS417_07885 -1.7 -3.4 hypothetical protein compare
PS417_02895 -1.7 -2.9 precorrin-6Y C5,15-methyltransferase compare
PS417_06200 -1.7 -5.4 protein-PII uridylyltransferase compare
PS417_08155 -1.7 -4.3 integration host factor subunit beta compare
PS417_08245 -1.5 -1.5 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_24585 -1.5 -9.3 AMP nucleosidase compare
PS417_20610 -1.5 -2.2 hypothetical protein compare
PS417_20030 -1.5 -2.7 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PS417_01570 -1.4 -1.1 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_22525 -1.3 -5.3 ATP--cobalamin adenosyltransferase compare
PS417_08580 -1.3 -6.2 histidine kinase compare
PS417_18375 -1.3 -5.7 hypothetical protein conserved
PS417_26990 -1.2 -2.2 RNA pyrophosphohydrolase compare
PS417_18400 -1.2 -4.1 D-ribose ABC transporter, ATPase component RbsA (from data) compare
PS417_16990 -1.2 -5.9 acyl-CoA dehydrogenase compare
PS417_22565 -1.2 -1.8 formyltetrahydrofolate deformylase compare
PS417_27315 -1.1 -1.9 hypothetical protein compare
PS417_17565 -1.1 -2.9 branched-chain amino acid aminotransferase compare
PS417_08035 -1.1 -6.5 adenine transporter (MFS superfamily) (from data) compare
PS417_24835 -1.1 -5.6 hypothetical protein compare
PS417_13075 -1.1 -1.4 hypothetical protein compare
PS417_23900 -1.1 -5.1 poly(A) polymerase compare
PS417_24785 -1.1 -3.2 nucleoside-diphosphate sugar epimerase compare
PS417_26695 -1.1 -1.3 uracil phosphoribosyltransferase compare
PS417_12570 -1.1 -4.9 AP endonuclease compare
PS417_08205 -1.1 -4.0 acetyltransferase compare
PS417_18690 -1.0 -3.0 aromatic amino acid aminotransferase compare
PS417_00975 -1.0 -2.0 hypothetical protein compare
PS417_21120 -1.0 -4.0 phosphoserine phosphatase compare
PS417_06205 -1.0 -6.7 methionine aminopeptidase compare
PS417_12560 -1.0 -6.8 MFS transporter compare
PS417_03205 -1.0 -5.1 adenine deaminase compare
PS417_26530 -0.9 -1.3 hypothetical protein compare
PS417_03925 -0.9 -3.9 nicotinate-nucleotide pyrophosphorylase compare
PS417_10025 -0.9 -1.7 bacteriophage lambda NinG family protein compare
PS417_09915 -0.9 -1.5 hypothetical protein compare
PS417_08380 -0.9 -4.4 ABC transporter ATP-binding protein compare
PS417_16555 -0.9 -1.5 cupin compare
PS417_15510 -0.9 -1.6 hypothetical protein compare
PS417_13730 -0.9 -1.8 hypothetical protein compare
PS417_26770 -0.9 -2.3 tRNA (guanine-N7)-methyltransferase compare
PS417_18590 -0.8 -3.8 SAM-dependent methyltransferase compare
PS417_05820 -0.8 -1.7 recombinase RecX compare
PS417_00650 -0.8 -0.9 LysR family transcriptional regulator compare
PS417_16005 -0.8 -3.1 ATPase compare
PS417_18425 -0.8 -1.1 sporulation protein compare
PS417_14235 -0.8 -2.1 hypothetical protein compare
PS417_27615 -0.8 -4.5 ammonia channel protein compare
PS417_15480 -0.8 -1.1 ABC transporter substrate-binding protein compare
PS417_14305 -0.8 -3.3 hydroxyproline-2-epimerase compare
PS417_23375 -0.8 -1.0 cytochrome C oxidase compare
PS417_08225 -0.8 -3.2 acetolactate synthase compare
PS417_26000 -0.8 -4.9 8-amino-7-oxononanoate synthase compare
PS417_26005 -0.8 -5.2 biotin synthase compare
PS417_04080 -0.8 -1.8 peptide ABC transporter substrate-binding protein compare
PS417_27435 -0.8 -4.0 polyphosphate kinase compare
PS417_27815 -0.8 -1.5 hypothetical protein compare
PS417_21850 -0.8 -1.4 LysR family transcriptional regulator compare
PS417_20665 -0.8 -4.0 hypothetical protein compare
PS417_06370 -0.8 -1.6 cold-shock protein compare
PS417_12565 -0.8 -2.2 2-dehydro-3-deoxygluconokinase compare
PS417_26605 -0.8 -0.6 malonate decarboxylase subunit beta compare
PS417_07595 -0.7 -2.8 PasA protein compare
PS417_27290 -0.7 -1.2 hypothetical protein compare
PS417_15400 -0.7 -1.4 hypothetical protein compare
PS417_18435 -0.7 -1.2 hypothetical protein compare
PS417_22260 -0.7 -2.3 segregation and condensation protein B compare
PS417_22385 -0.7 -4.9 quinolinate synthase A compare
PS417_03560 -0.7 -1.4 GTP-binding protein compare
PS417_16520 -0.7 -2.0 cold-shock protein compare
PS417_11615 -0.7 -1.5 urea ABC transporter ATP-binding protein compare
PS417_25225 -0.7 -2.0 MFS transporter compare
PS417_02175 -0.7 -2.1 transcriptional regulator compare
PS417_12555 -0.7 -3.9 phosphogluconate 2-dehydrogenase KguD (EC 1.1.1.43) (from data) compare
PS417_04410 -0.7 -0.8 hypothetical protein compare
PS417_01995 -0.7 -1.0 hypothetical protein compare
PS417_02815 -0.7 -3.5 urea ABC transporter ATP-binding protein compare
PS417_27135 -0.7 -0.8 glutamine synthetase compare
PS417_05160 -0.7 -1.1 DNA polymerase III subunit chi compare
PS417_01645 -0.7 -2.0 cupin compare
PS417_01380 -0.7 -2.8 nucleotide cyclase compare
PS417_17935 -0.7 -2.0 endoribonuclease L-PSP compare
PS417_17455 -0.7 -2.3 cytochrome C compare
PS417_05695 -0.7 -2.9 transcriptional regulator compare
PS417_13660 -0.7 -2.2 AsnC family transcriptional regulator compare
PS417_01400 -0.7 -1.7 hypothetical protein compare
PS417_07140 -0.7 -1.9 peptidase M48 compare
PS417_23380 -0.7 -1.8 cytochrome o ubiquinol oxidase subunit III compare
PS417_14515 -0.7 -1.6 acetylglucosaminylphosphatidylinositol deacetylase compare
PS417_17505 -0.7 -2.0 LuxR family transcriptional regulator compare
PS417_09045 -0.7 -1.9 histidine kinase compare
PS417_28070 -0.7 -3.4 phosphate ABC transporter ATP-binding protein compare
PS417_26725 -0.7 -2.9 hypothetical protein compare
PS417_28075 -0.6 -3.1 phosphate ABC transporter permease compare
PS417_02765 -0.6 -1.3 phosphate starvation-inducible protein PsiF compare
PS417_12595 -0.6 -1.5 transcriptional regulator compare
PS417_16715 -0.6 -1.1 DoxX family protein compare
PS417_28080 -0.6 -5.0 phosphate ABC transporter permease compare
PS417_21160 -0.6 -3.7 membrane protein compare
PS417_15560 -0.6 -1.1 hypothetical protein compare
PS417_26765 -0.6 -3.0 membrane protein compare
PS417_02615 -0.6 -3.2 transglutaminase compare
PS417_08590 -0.6 -1.8 hypothetical protein compare
PS417_16100 -0.6 -2.0 antibiotic biosynthesis monooxygenase compare
PS417_15285 -0.6 -0.9 type VI secretion protein compare
PS417_08195 -0.6 -4.0 hypothetical protein compare
PS417_21750 -0.6 -5.3 acetyl-CoA synthetase compare
PS417_23390 -0.6 -3.5 ubiquinol oxidase subunit II compare
PS417_00295 -0.6 -2.2 hypothetical protein compare
PS417_22570 -0.6 -0.8 H-NS histone compare
PS417_05905 -0.6 -0.8 hypothetical protein compare
PS417_18420 -0.6 -1.5 deoxyribonuclease compare
PS417_22520 -0.6 -1.9 histidine kinase compare
PS417_13445 -0.6 -1.4 D-aminopeptidase compare
PS417_05975 -0.6 -0.7 chemotaxis protein CheW compare
PS417_08680 -0.6 -1.6 flagellar biosynthesis protein FlhB compare
PS417_08030 -0.6 -2.9 transcriptional regulator compare
PS417_18395 -0.6 -1.1 D-ribose ABC transporter, permease component RbsC (from data) compare
PS417_13800 -0.6 -2.7 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_15105 -0.6 -3.0 membrane protein compare
PS417_08990 -0.6 -2.5 ABC transporter substrate-binding protein compare
PS417_15975 -0.6 -1.6 glutamate carboxypeptidase compare
PS417_00900 -0.6 -1.1 4-aminobutyrate aminotransferase compare
PS417_20915 -0.6 -1.4 hypothetical protein compare


Specific Phenotypes

For 17 genes in this experiment

For nitrogen source Adenosine in Pseudomonas simiae WCS417

For nitrogen source Adenosine across organisms