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Experiment set5IT085 for
Pseudomonas putida KT2440
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Vanillin carbon source
Genes with
specific
phenotypes:
gene
name
fitness
t score
description
PP
_1292
-5.8
-8.9
Cyclic pyranopterin monophosphate synthase accessory protein
compare
PP
_1377
-5.8
-8.0
beta-ketoadipyl-CoA thiolase
compare
PP
_3736
-5.7
-10.8
vanillate O-demethylase oxygenase subunit
compare
PP
_4656
-5.4
-9.7
protocatechuate 3,4-dioxygenase beta chain
compare
PP
_3952
-5.1
-10.9
3-oxoadipate CoA-transferase subunit A
compare
PP
_2123
-5.1
-12.3
molybdenum::molybdopterin ligase
compare
PP
_1294
-5.0
-6.3
molybdopterin synthase large subunit
compare
PP
_1379
-5.0
-8.3
3-carboxy-cis,cis-muconate cycloisomerase
compare
PP
_3737
-4.8
-10.1
vanillate O-demethylase oxidoreductase
compare
PP
_1380
-4.7
-8.3
3-oxoadipate enol-lactonase 2
compare
PP
_1375
-4.6
-16.4
transcription regulatory protein (pca regulon)
compare
PP
_4655
-4.6
-8.4
protocatechuate 3,4-dioxygenase alpha chain
compare
PP
_3828
-4.2
-10.9
Molybdate-binding periplasmic protein
compare
PP
_3829
-3.8
-7.5
Molybdenum transport system permease protein ModB
compare
PP
_3621
-3.6
-8.7
vanillin dehydrogenase, iorA-like component
(from data)
compare
PP
_1616
-3.6
-13.0
formaldehyde dehydrogenase, glutathione-dependent
compare
PP
_3622
-3.3
-16.3
vanillin dehydrogenase, iorB-like component
(from data)
compare
PP
_5161
-3.3
-6.8
putative lysophospholipase
compare
PP
_3830
-3.2
-11.9
Molybdenum import ATP-binding protein ModC
compare
PP
_4597
-2.4
-5.9
Cyclic pyranopterin monophosphate synthase
compare
PP
_3455
-2.2
-6.5
Multidrug efflux RND membrane fusion protein
compare
PP
_3623
-2.1
-9.7
vanillin dehydrogenase, cytochrome c component
(from data)
compare
PP
_3456
-2.1
-8.8
Multidrug resistance protein MexB
compare
PP
_4231
-1.8
-5.3
putative Xanthine dehydrogenase accessory factor
compare
PP
_1615
-1.6
-5.8
Transcriptional regulator, LysR family
compare
PP
_3493
-1.5
-8.2
Transcriptional regulator, LysR family
compare
PP
_1378
-1.4
-5.0
alpha-ketoglutarate permease
compare
PP
_4779
-1.3
-9.7
AMP nucleosidase
compare
PP
_4622
-1.3
-5.3
Hmg transcriptional repressor
compare
PP
_0909
-1.2
-6.6
conserved exported protein of unknown function
compare
Specific phenotypes for carbon source Vanillin across organisms