Experiment set5IT085 for Pseudomonas putida KT2440

Compare to:

Vanillin carbon source

200 most important genes:

  gene name fitness t score description  
PP_1985 -6.6 -4.6 3-isopropylmalate dehydratase large subunit compare
PP_0422 -6.4 -6.3 Indole-3-glycerol phosphate synthase compare
PP_1988 -6.1 -8.4 3-isopropylmalate dehydrogenase compare
PP_5014 -6.0 -4.1 Phosphoribosyl-AMP cyclohydrolase compare
PP_0184 -6.0 -9.1 Argininosuccinate lyase compare
PP_2168 -5.9 -11.3 Transaldolase compare
PP_0083 -5.9 -5.7 tryptophan synthase beta chain compare
PP_5185 -5.9 -8.0 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0290 -5.8 -9.7 Imidazole glycerol phosphate synthase subunit HisH compare
PP_1292 -5.8 -8.9 Cyclic pyranopterin monophosphate synthase accessory protein compare
PP_1377 -5.8 -8.0 beta-ketoadipyl-CoA thiolase compare
PP_0691 -5.8 -6.9 Glutamate 5-kinase compare
PP_3951 -5.8 -8.8 3-oxoadipate CoA-transferase subunit A compare
PP_1986 -5.7 -3.9 3-isopropylmalate dehydratase small subunit compare
PP_3736 -5.7 -10.8 vanillate O-demethylase oxygenase subunit compare
PP_0846 -5.6 -3.9 DnaK-like molecular chaperone specific for IscU compare
PP_5289 -5.6 -7.7 Acetylglutamate kinase compare
PP_5095 -5.6 -3.9 pyrroline-5-carboxylate reductase compare
PP_0967 -5.6 -11.9 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0966 -5.6 -12.4 Histidinol dehydrogenase compare
PP_0420 -5.5 -12.2 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_5097 -5.5 -15.4 homoserine O-acetyltransferase compare
PP_4799 -5.4 -3.7 putative Muramoyltetrapeptide carboxypeptidase compare
PP_0082 -5.4 -7.4 tryptophan synthase alpha chain compare
PP_4656 -5.4 -9.7 protocatechuate 3,4-dioxygenase beta chain compare
PP_1995 -5.4 -11.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_3511 -5.4 -10.9 Branched-chain-amino-acid aminotransferase compare
PP_4909 -5.4 -9.7 phosphoserine phosphatase compare
PP_4678 -5.3 -16.4 Ketol-acid reductoisomerase compare
PP_5098 -5.3 -9.5 methionine biosynthesis protein MetW compare
PP_4993 -5.3 -7.2 Glutathione synthetase compare
PP_0293 -5.2 -4.3 Imidazole glycerol phosphate synthase subunit HisF compare
PP_1079 -5.2 -8.0 Ornithine carbamoyltransferase compare
PP_1088 -5.2 -16.3 Argininosuccinate synthase compare
PP_3952 -5.1 -10.9 3-oxoadipate CoA-transferase subunit A compare
PP_2123 -5.1 -12.3 molybdenum::molybdopterin ligase compare
PP_4696 -5.1 -7.8 Nitrogen regulation protein NR(I) compare
PP_1381 -5.1 -2.2 4-carboxymuconolactone decarboxylase compare
PP_4679 -5.1 -8.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_1294 -5.0 -6.3 molybdopterin synthase large subunit compare
PP_1379 -5.0 -8.3 3-carboxy-cis,cis-muconate cycloisomerase compare
PP_5155 -5.0 -6.5 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1233 -5.0 -7.6 sulfurtransferase compare
PP_0292 -5.0 -5.5 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0965 -4.9 -12.2 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_3662 -4.8 -10.7 conserved protein of unknown function compare
PP_2001 -4.8 -12.8 O-succinylhomoserine sulfhydrylase compare
PP_1075 -4.8 -15.1 glycerol kinase compare
PP_0368 -4.8 -14.2 putative Acyl-CoA dehydrogenase compare
PP_4680 -4.8 -15.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0417 -4.8 -21.2 Anthranilate synthase component 1 compare
PP_3737 -4.8 -10.1 vanillate O-demethylase oxidoreductase compare
PP_4723 -4.7 -3.3 Carbamoyl-phosphate synthase large chain compare
PP_2371 -4.7 -9.0 Sulphite reductase hemoprotein, beta subunit compare
PP_4890 -4.7 -7.1 ATP phosphoribosyltransferase regulatory subunit compare
PP_1380 -4.7 -8.3 3-oxoadipate enol-lactonase 2 compare
PP_1375 -4.6 -16.4 transcription regulatory protein (pca regulon) compare
PP_5128 -4.6 -9.1 Dihydroxy-acid dehydratase compare
PP_4655 -4.6 -8.4 protocatechuate 3,4-dioxygenase alpha chain compare
PP_5015 -4.5 -6.1 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_1076 -4.3 -12.0 aquaglyceroporin compare
PP_1713 -4.3 -2.5 Transcriptional regulator PcaQ compare
PP_4693 -4.3 -10.7 RNA polymerase-binding transcription factor DksA compare
PP_4515 -4.2 -9.4 Transcriptional regulator, MarR family compare
PP_0421 -4.2 -8.2 Anthranilate phosphoribosyltransferase compare
PP_5303 -4.2 -6.8 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_2327 -4.2 -9.5 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1654 -4.2 -5.0 cysteine synthase B compare
PP_3828 -4.2 -10.9 Molybdate-binding periplasmic protein compare
PP_0406 -4.2 -5.7 Nucleotidyltransferase family protein compare
PP_0289 -4.2 -8.4 Imidazoleglycerol-phosphate dehydratase compare
PP_3999 -4.1 -9.6 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4058 -4.1 -15.5 1,4-alpha-glucan branching enzyme compare
PP_4999 -4.0 -2.7 dihydroorotase-like protein compare
PP_1025 -4.0 -14.1 2-isopropylmalate synthase compare
PP_0959 -3.9 -4.9 phospholipid ABC transporter compare
PP_0719 -3.9 -4.6 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_3829 -3.8 -7.5 Molybdenum transport system permease protein ModB compare
PP_1293 -3.8 -3.3 molybdopterin synthase small subunit compare
PP_1428 -3.7 -4.9 Sigma factor AlgU negative regulatory protein compare
PP_3621 -3.6 -8.7 vanillin dehydrogenase, iorA-like component (from data) compare
PP_0960 -3.6 -8.5 phospholipid ABC transporter binding protein compare
PP_1616 -3.6 -13.0 formaldehyde dehydrogenase, glutathione-dependent compare
PP_4724 -3.5 -5.3 Carbamoyl-phosphate synthase small chain compare
PP_0856 -3.5 -8.7 conserved lipoprotein of unknown function compare
PP_1656 -3.4 -8.7 ATP:GTP 3'-pyrophosphotransferase compare
PP_0958 -3.4 -10.3 phospholipid ABC transporter ATP-binding subunit compare
PP_1764 -3.3 -5.9 Phosphoglycolate phosphatase 2 compare
PP_4129 -3.3 -6.9 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_3622 -3.3 -16.3 vanillin dehydrogenase, iorB-like component (from data) compare
PP_5161 -3.3 -6.8 putative lysophospholipase compare
PP_0339 -3.2 -3.1 Pyruvate dehydrogenase E1 component compare
PP_4131 -3.2 -10.3 NADH-quinone oxidoreductase subunit N compare
PP_3830 -3.2 -11.9 Molybdenum import ATP-binding protein ModC compare
PP_4902 -3.1 -3.9 Oligoribonuclease compare
PP_4126 -3.1 -4.1 NADH-quinone oxidoreductase subunit I compare
PP_0961 -3.1 -11.5 toluene tolerance protein compare
PP_0760 -3.1 -3.8 conserved membrane protein of unknown function compare
PP_2136 -3.1 -6.6 enoyl-CoA hydratase/3-hydroxyacyl-CoA dehydrogenase compare
PP_2163 -3.0 -11.0 VacJ lipoprotein compare
PP_0393 -3.0 -5.6 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4937 -3.0 -7.7 toluene tolerance protein compare
PP_0735 -2.9 -2.5 molybdopterin-synthase adenylyltransferase compare
PP_4342 -2.9 -8.6 flagellar synthesis regulator, putative ATPase compare
PP_4098 -2.8 -5.3 UvrABC system protein C compare
PP_2370 -2.8 -3.1 conserved protein of unknown function compare
PP_3590 -2.8 -8.3 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_0547 -2.8 -6.1 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_4700 -2.7 -6.3 pantothenate synthetase compare
PP_0962 -2.7 -4.2 toluene-tolerance protein compare
PP_2328 -2.7 -7.6 Phosphoadenosine phosphosulfate reductase compare
PP_2820 -2.7 -2.3 HTH-type transcriptional regulator nfxB compare
PP_5217 -2.6 -10.9 Polyphosphate kinase compare
PP_5146 -2.6 -9.1 RNA pyrophosphohydrolase compare
PP_4964 -2.6 -3.9 D-erythrose 4-phosphate dehydrogenase compare
PP_4120 -2.6 -6.9 NADH-quinone oxidoreductase subunit B compare
PP_1826 -2.6 -4.5 Hydrolase, isochorismatase family compare
PP_2217 -2.5 -3.4 enoyl-CoA hydratase compare
PP_0949 -2.5 -9.4 putative ATP-binding protein UPF0042 compare
PP_4099 -2.4 -11.4 two-componenent system BarA/UvrY - regulatory subunit compare
PP_4597 -2.4 -5.9 Cyclic pyranopterin monophosphate synthase compare
PP_4121 -2.4 -9.2 NADH-quinone oxidoreductase subunit C/D compare
PP_5216 -2.4 -3.4 exopolyphosphatase compare
PP_4130 -2.4 -4.6 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_1198 -2.3 -4.0 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_4124 -2.3 -7.9 NADH-quinone oxidoreductase subunit G compare
PP_1650 -2.3 -7.5 Sensor protein GacS compare
PP_3946 -2.3 -3.1 HTH-type transcriptional repressor NicR compare
PP_3455 -2.2 -6.5 Multidrug efflux RND membrane fusion protein compare
PP_3623 -2.1 -9.7 vanillin dehydrogenase, cytochrome c component (from data) compare
PP_5075 -2.1 -11.0 glutamate synthase (NADPH) beta subunit compare
PP_4695 -2.1 -8.4 Sensory box histidine kinase compare
PP_1215 -2.1 -1.9 Crossover junction endodeoxyribonuclease RuvC compare
PP_3456 -2.1 -8.8 Multidrug resistance protein MexB compare
PP_2000 -2.0 -3.9 amidophosphoribosyl transferase compare
PP_0127 -2.0 -4.6 Thiol:disulfide interchange protein compare
PP_4895 -1.9 -4.9 tRNA dimethylallyltransferase compare
PP_5227 -1.9 -9.1 diaminopimelate decarboxylase compare
PP_1719 -1.9 -10.7 Tail-specific protease prc compare
PP_2402 -1.9 -3.9 putative Sensor histidine kinase compare
PP_1733 -1.9 -4.2 membrane ATPase of the MinC-MinD-MinE system compare
PP_2122 -1.8 -3.2 molybdenum cofactor biosynthesis protein B compare
PP_1216 -1.8 -3.8 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_1598 -1.8 -6.5 regulatory intramembrane protein RIP zinc protease compare
PP_0345 -1.8 -4.3 putative Heptose kinase WapP compare
PP_4231 -1.8 -5.3 putative Xanthine dehydrogenase accessory factor compare
PP_4517 -1.8 -2.6 conserved protein of unknown function compare
PP_0888 -1.8 -3.7 Photosynthetic apparatus regulatory protein RegA compare
PP_1589 -1.8 -8.6 uridylyltransferase compare
PP_4122 -1.7 -2.4 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_0291 -1.7 -1.6 conserved protein of unknown function compare
PP_4804 -1.7 -3.5 RlpA-like lipoprotein compare
PP_0855 -1.7 -2.9 conserved protein of unknown function compare
PP_0937 -1.6 -6.3 endoribonuclease G (RNAse G) compare
PP_0787 -1.6 -4.7 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_0346 -1.6 -6.0 putative Heptose kinase WapQ compare
PP_1789 -1.6 -4.6 Hydrolase, haloacid dehalogenase-like family compare
PP_1615 -1.6 -5.8 Transcriptional regulator, LysR family compare
PP_1387 -1.5 -2.8 Probable HTH-type transcriptional regulator TtgR compare
PP_3493 -1.5 -8.2 Transcriptional regulator, LysR family compare
PP_0910 -1.5 -5.4 conserved exported protein of unknown function compare
PP_1378 -1.4 -5.0 alpha-ketoglutarate permease compare
PP_3248 -1.4 -5.4 Dyp-type peroxidase family protein compare
PP_1468 -1.4 -3.7 Tyrosine recombinase XerD compare
PP_5076 -1.4 -10.8 L-glutamate synthase(NADPH) alpha subunit compare
PP_1208 -1.4 -2.3 conserved protein of unknown function, SlyX family compare
PP_2356 -1.4 -8.4 putative Phytochrome family protein compare
PP_1734 -1.3 -4.7 Probable septum site-determining protein MinC compare
PP_5328 -1.3 -2.5 putative phosphate transport system permease protein compare
PP_4779 -1.3 -9.7 AMP nucleosidase compare
PP_4994 -1.3 -3.7 conserved protein of unknown function compare
PP_1655 -1.3 -3.7 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD compare
PP_4320 -1.3 -2.6 cytochrome c-type biogenesis protein compare
PP_1994 -1.3 -3.7 tRNA pseudouridine (38-40)synthase compare
PP_4917 -1.3 -4.9 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_1304 -1.3 -7.6 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_0913 -1.3 -6.1 conserved exported protein of unknown function compare
PP_1898 -1.3 -3.3 MotA/TolQ/ExbB proton channel family protein compare
PP_3819 -1.3 -6.8 glutathione reductase (NADPH) compare
PP_5329 -1.3 -3.9 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_4265 -1.3 -3.1 DNA-binding transcriptional dual regulator compare
PP_1237 -1.3 -2.1 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_5309 -1.3 -6.2 oxidative and nitrosative stress transcriptional dual regulator compare
PP_3603 -1.3 -5.4 Transcriptional regulator, GntR family compare
PP_4622 -1.3 -5.3 Hmg transcriptional repressor compare
PP_5346 -1.2 -5.9 pyruvate carboxylase subunit B compare
PP_0909 -1.2 -6.6 conserved exported protein of unknown function compare
PP_5084 -1.2 -7.9 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_5225 -1.2 -1.9 frataxin compare
PP_2773 -1.2 -1.8 conserved protein of unknown function compare
PP_5456 -1.2 -1.4 conserved protein of unknown function compare
PP_3241 -1.2 -1.5 conserved exported protein of unknown function compare
PP_1217 -1.2 -5.4 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_3833 -1.2 -3.9 Response regulator compare
PP_4364 -1.2 -3.0 putative Anti-sigma F factor antagonist compare
PP_1034 -1.2 -7.5 multicopper oxidase compare
PP_2354 -1.2 -7.1 Sensory box histidine kinase/response regulator compare
PP_4880 -1.2 -7.9 exoribonuclease R compare
PP_1790 -1.2 -2.1 putative Acylneuraminate cytidylyltransferase compare
PP_5232 -1.2 -2.7 conserved protein of unknown function compare


Specific Phenotypes

For 30 genes in this experiment

For carbon source Vanillin in Pseudomonas putida KT2440

For carbon source Vanillin across organisms