Experiment set5IT084 for Pseudomonas simiae WCS417

Compare to:

Putrescine Dihydrochloride nitrogen source

200 most important genes:

  gene name fitness t score description  
PS417_02005 -6.6 -11.8 glutamate synthase compare
PS417_27105 -6.6 -4.5 spermidine/putrescine ABC transporter permease compare
PS417_18560 -6.5 -11.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_25720 -6.3 -8.7 anthranilate synthase component II compare
PS417_26740 -6.3 -9.1 homoserine acetyltransferase compare
PS417_04415 -6.2 -8.4 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_18585 -6.2 -6.0 3-isopropylmalate dehydrogenase compare
PS417_18600 -6.0 -3.7 isopropylmalate isomerase compare
PS417_27110 -6.0 -5.8 spermidine/putrescine ABC transporter permease conserved
PS417_12855 -5.8 -5.7 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_26745 -5.8 -8.1 methionine biosynthesis protein MetW compare
PS417_22690 -5.7 -3.7 phosphogluconate dehydratase compare
PS417_04420 -5.7 -11.7 histidinol dehydrogenase compare
PS417_18595 -5.4 -3.9 3-isopropylmalate dehydratase compare
PS417_24745 -5.4 -4.8 gamma-glutamyl phosphate reductase compare
PS417_23800 -5.3 -11.2 ketol-acid reductoisomerase compare
PS417_01575 -5.3 -5.2 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_23805 -5.3 -6.8 acetolactate synthase 3 regulatory subunit compare
PS417_23810 -5.2 -13.4 acetolactate synthase 3 catalytic subunit compare
PS417_27115 -5.2 -15.7 putrescine ABC transporter, ATPase component (from data) conserved
PS417_00185 -5.1 -6.2 tryptophan synthase subunit beta compare
PS417_01850 -5.0 -9.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_01855 -5.0 -4.6 phosphoribosyl-AMP cyclohydrolase compare
PS417_02510 -5.0 -7.6 ATP phosphoribosyltransferase regulatory subunit compare
PS417_12290 -4.9 -8.8 sulfite reductase compare
PS417_01635 -4.9 -7.8 nitrogen regulation protein NR(I) compare
PS417_27795 -4.9 -1.6 orotate phosphoribosyltransferase compare
PS417_27140 -4.8 -4.5 Gamma-glutamyl-putrescine synthetase (EC 6.3.1.11) (from data) compare
PS417_25725 -4.8 -11.0 anthranilate synthase component I compare
PS417_23545 -4.8 -5.2 gamma-glutamyl kinase compare
PS417_01565 -4.7 -4.9 imidazole glycerol phosphate synthase compare
PS417_00180 -4.6 -4.1 tryptophan synthase subunit alpha compare
PS417_06200 -4.6 -8.7 protein-PII uridylyltransferase compare
PS417_08125 -4.5 -2.0 prephenate dehydratase compare
PS417_02000 -4.4 -10.3 glutamate synthase compare
PS417_27040 -4.3 -5.0 3-phosphoglycerate dehydrogenase compare
PS417_23995 -4.2 -1.4 preprotein translocase subunit SecG compare
PS417_08685 -4.1 -1.6 flagellar hook-length control protein FliK compare
PS417_05595 -4.1 -7.4 ornithine carbamoyltransferase compare
PS417_26890 -4.0 -6.4 dihydroxy-acid dehydratase compare
PS417_27195 -3.6 -1.6 N-acetylglutamate synthase compare
PS417_27835 -3.6 -7.9 endoribonuclease compare
PS417_18530 -3.6 -3.3 O-succinylhomoserine sulfhydrylase compare
PS417_25715 -3.5 -5.4 anthranilate phosphoribosyltransferase compare
PS417_26995 -3.5 -9.0 phosphoserine phosphatase compare
PS417_27125 -3.5 -7.8 spermidine/putrescine ABC transporter substrate-binding protein conserved
PS417_25710 -3.4 -2.2 indole-3-glycerol-phosphate synthase compare
PS417_20125 -3.3 -4.9 phosphoribosylglycinamide formyltransferase compare
PS417_16465 -3.3 -7.1 sirohydrochlorin ferrochelatase compare
PS417_01640 -3.2 -3.7 histidine kinase compare
PS417_23110 -3.2 -5.3 2-isopropylmalate synthase compare
PS417_24155 -3.1 -3.6 ATP-binding protein compare
PS417_26730 -3.0 -1.3 pyrroline-5-carboxylate reductase compare
PS417_01570 -3.0 -1.6 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_27745 -2.8 -4.4 gamma-glutamyl-gamma-aminobutyraldehyde dehydrogenase (EC 1.2.1.99); 4-guanidinobutyraldehyde dehydrogenase (EC 1.2.1.54) (from data) compare
PS417_22385 -2.7 -8.7 quinolinate synthase A compare
PS417_06375 -2.7 -1.7 deoxycytidine triphosphate deaminase compare
PS417_27130 -2.7 -9.2 Gamma-aminobutyrate:alpha-ketoglutarate aminotransferase (EC 2.6.1.19) (from data) conserved
PS417_21125 -2.6 -8.1 phosphoadenosine phosphosulfate reductase compare
PS417_02415 -2.5 -4.4 phosphoserine phosphatase compare
PS417_23380 -2.5 -4.2 cytochrome o ubiquinol oxidase subunit III compare
PS417_26985 -2.5 -4.6 phosphoenolpyruvate-protein phosphotransferase compare
PS417_01580 -2.5 -2.2 imidazole glycerol phosphate synthase compare
PS417_03925 -2.4 -8.0 nicotinate-nucleotide pyrophosphorylase compare
PS417_08245 -2.4 -1.5 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase compare
PS417_27010 -2.3 -10.1 threonine dehydratase compare
PS417_27135 -2.2 -1.4 glutamine synthetase compare
PS417_23385 -2.2 -6.5 cytochrome o ubiquinol oxidase subunit I compare
PS417_01710 -2.2 -8.2 histidine utilization repressor compare
PS417_20160 -2.2 -3.2 cysteine synthase compare
PS417_18690 -2.1 -2.4 aromatic amino acid aminotransferase compare
PS417_08220 -2.1 -1.4 epimerase compare
PS417_27120 -2.1 -3.0 ABC transporter substrate-binding protein compare
PS417_21210 -2.0 -1.9 amidotransferase compare
PS417_01560 -1.9 -2.3 imidazoleglycerol-phosphate dehydratase compare
PS417_28220 -1.9 -2.8 LysR family transcriptional regulator compare
PS417_23390 -1.8 -7.7 ubiquinol oxidase subunit II compare
PS417_21430 -1.8 -3.1 3-oxoacyl-ACP synthase compare
PS417_06680 -1.8 -9.0 nuclease PIN compare
PS417_12555 -1.8 -5.3 phosphogluconate 2-dehydrogenase KguD (EC 1.1.1.43) (from data) compare
PS417_22520 -1.7 -2.5 histidine kinase compare
PS417_07115 -1.7 -8.7 L-aspartate oxidase compare
PS417_03560 -1.7 -2.7 GTP-binding protein compare
PS417_02555 -1.6 -10.8 exoribonuclease R compare
PS417_23770 -1.6 -2.6 exodeoxyribonuclease V subunit alpha compare
PS417_06445 -1.5 -2.8 iron-siderophore ABC transporter permease compare
PS417_21030 -1.5 -6.5 GntR family transcriptional regulator compare
PS417_18590 -1.5 -2.1 SAM-dependent methyltransferase compare
PS417_23775 -1.4 -2.7 exodeoxyribonuclease V subunit beta compare
PS417_08130 -1.4 -2.0 aspartate aminotransferase compare
PS417_26390 -1.4 -1.7 acyltransferase compare
PS417_09915 -1.4 -2.0 hypothetical protein compare
PS417_08155 -1.3 -3.1 integration host factor subunit beta compare
PS417_26990 -1.3 -1.3 RNA pyrophosphohydrolase compare
PS417_24835 -1.3 -4.9 hypothetical protein compare
PS417_16490 -1.3 -1.7 cell division protein FtsK compare
PS417_21705 -1.3 -3.9 arginine N-succinyltransferase compare
PS417_06645 -1.3 -6.4 RNA polymerase-associated protein RapA compare
PS417_26695 -1.3 -1.0 uracil phosphoribosyltransferase compare
PS417_07170 -1.3 -1.7 hypothetical protein compare
PS417_21035 -1.2 -4.1 multidrug transporter compare
PS417_00755 -1.2 -0.9 biofilm PGA synthesis protein PgaD compare
PS417_08195 -1.2 -6.8 hypothetical protein compare
PS417_16520 -1.2 -2.6 cold-shock protein compare
PS417_14590 -1.2 -2.4 LysR family transcriptional regulator compare
PS417_16720 -1.2 -1.1 membrane protein compare
PS417_08200 -1.2 -2.0 hypothetical protein compare
PS417_24935 -1.2 -1.2 hypothetical protein compare
PS417_15780 -1.2 -2.6 membrane protein compare
PS417_08205 -1.2 -3.0 acetyltransferase compare
PS417_12565 -1.2 -1.6 2-dehydro-3-deoxygluconokinase compare
PS417_14515 -1.1 -2.0 acetylglucosaminylphosphatidylinositol deacetylase compare
PS417_23370 -1.1 -2.0 protoheme IX farnesyltransferase compare
PS417_27585 -1.1 -1.7 diaminopimelate epimerase compare
PS417_27940 -1.1 -1.6 type VI secretion protein compare
PS417_15285 -1.1 -1.1 type VI secretion protein compare
PS417_22620 -1.1 -2.8 pyruvate kinase compare
PS417_15975 -1.0 -1.8 glutamate carboxypeptidase compare
PS417_08580 -1.0 -4.0 histidine kinase compare
PS417_10305 -1.0 -2.4 hypothetical protein compare
PS417_08225 -1.0 -2.9 acetolactate synthase compare
PS417_16555 -1.0 -1.9 cupin compare
PS417_23375 -1.0 -1.7 cytochrome C oxidase compare
PS417_02255 -1.0 -1.7 lipopolysaccharide kinase compare
PS417_19705 -1.0 -2.0 flagellar biosynthesis regulator FlhF compare
PS417_01145 -0.9 -1.0 taurine transporter ATP-binding subunit compare
PS417_22570 -0.9 -0.9 H-NS histone compare
PS417_13965 -0.9 -3.4 acetoin utilization protein compare
PS417_14655 -0.9 -1.1 lysine transporter LysE compare
PS417_03310 -0.9 -3.0 carbonate dehydratase compare
PS417_27425 -0.9 -5.3 exopolyphosphatase compare
PS417_27815 -0.9 -1.4 hypothetical protein compare
PS417_17405 -0.9 -1.2 AraC family transcriptional regulator compare
PS417_23900 -0.9 -4.3 poly(A) polymerase compare
PS417_08540 -0.9 -2.4 RNA helicase compare
PS417_20665 -0.9 -2.8 hypothetical protein compare
PS417_13800 -0.9 -2.3 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_05850 -0.9 -2.3 LysR family transcriptional regulator compare
PS417_20610 -0.8 -0.9 hypothetical protein compare
PS417_22850 -0.8 -4.4 virulence factor family protein compare
PS417_27515 -0.8 -2.7 heme biosynthesis protein HemY compare
PS417_21980 -0.8 -3.0 permease DsdX compare
PS417_14065 -0.8 -4.9 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_16005 -0.8 -1.5 ATPase compare
PS417_12160 -0.8 -1.8 Fis family transcriptional regulator compare
PS417_10995 -0.8 -2.1 GntR family transcriptional regulator compare
PS417_05695 -0.8 -2.5 transcriptional regulator compare
PS417_00295 -0.8 -4.2 hypothetical protein compare
PS417_16715 -0.8 -1.4 DoxX family protein compare
PS417_13620 -0.8 -1.6 thermostable hemolysin compare
PS417_07455 -0.8 -1.7 glutamine amidotransferase compare
PS417_14235 -0.8 -1.4 hypothetical protein compare
PS417_01605 -0.8 -0.5 phosphoglycerate mutase compare
PS417_01310 -0.8 -2.9 ATPase compare
PS417_05885 -0.8 -3.6 potassium transporter Kup compare
PS417_15325 -0.8 -0.9 type VI secretion protein compare
PS417_10010 -0.8 -1.5 Replication protein P compare
PS417_06540 -0.8 -1.5 membrane protein compare
PS417_15465 -0.7 -2.1 carboxynorspermidine decarboxylase compare
PS417_04050 -0.7 -1.6 peptide ABC transporter ATP-binding protein compare
PS417_23715 -0.7 -1.5 cupin compare
PS417_04300 -0.7 -2.2 FagA protein compare
PS417_25730 -0.7 -2.5 phosphoglycolate phosphatase compare
PS417_28515 -0.7 -1.9 16S rRNA methyltransferase compare
PS417_04650 -0.7 -1.0 D-alanine--D-alanine ligase compare
PS417_02280 -0.7 -2.1 GlcNAc-PI de-N-acetylase compare
PS417_08015 -0.7 -3.0 haloacid dehalogenase compare
PS417_01005 -0.7 -1.5 methionine ABC transporter substrate-binding protein compare
PS417_21070 -0.7 -1.2 aconitate hydratase compare
PS417_07565 -0.7 -1.4 hypothetical protein compare
PS417_06395 -0.7 -1.1 amino acid transporter compare
PS417_07270 -0.7 -2.5 LysR family transcriptional regulator compare
PS417_04180 -0.7 -2.0 GntR family transcriptional regulator compare
PS417_17675 -0.7 -1.3 ABC transporter compare
PS417_16105 -0.7 -2.1 LysR family transcriptional regulator compare
PS417_22535 -0.7 -3.1 ornithine acetyltransferase compare
PS417_15585 -0.7 -2.3 DNA repair nucleotidyltransferase compare
PS417_03045 -0.7 -0.8 hypothetical protein compare
PS417_06095 -0.7 -1.1 energy transducer TonB compare
PS417_24115 -0.7 -1.1 hypothetical protein compare
PS417_11430 -0.7 -3.7 EamA compare
PS417_08365 -0.7 -0.7 hypothetical protein compare
PS417_20985 -0.7 -1.4 porin compare
PS417_06685 -0.7 -0.7 beta-ketoadipyl CoA thiolase compare
PS417_09035 -0.7 -1.8 hypothetical protein compare
PS417_18440 -0.7 -3.3 hypothetical protein compare
PS417_07165 -0.7 -2.3 dihydrodipicolinate synthase compare
PS417_02485 -0.6 -3.1 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_15775 -0.6 -1.6 short-chain dehydrogenase compare
PS417_21630 -0.6 -1.5 magnesium transporter compare
PS417_26765 -0.6 -1.8 membrane protein compare
PS417_09695 -0.6 -1.3 hydrolase compare
PS417_17440 -0.6 -1.5 beta-lactamase compare
PS417_13510 -0.6 -0.7 polyketide cyclase compare
PS417_08990 -0.6 -1.5 ABC transporter substrate-binding protein compare
PS417_15885 -0.6 -0.8 GCN5 family acetyltransferase compare
PS417_17685 -0.6 -1.2 allantoate amidohydrolase compare
PS417_26420 -0.6 -0.8 hypothetical protein compare
PS417_05975 -0.6 -0.6 chemotaxis protein CheW compare
PS417_20660 -0.6 -2.8 hypothetical protein compare


Specific Phenotypes

For 6 genes in this experiment

For nitrogen source Putrescine Dihydrochloride in Pseudomonas simiae WCS417

For nitrogen source Putrescine Dihydrochloride across organisms