Experiment set5IT084 for Pseudomonas simiae WCS417

Compare to:

Putrescine Dihydrochloride nitrogen source

200 most detrimental genes:

  gene name fitness t score description  
PS417_01955 +2.9 19.7 peptidase compare
PS417_04585 +1.9 5.8 hypothetical protein compare
PS417_00045 +1.8 6.2 glycerol acyltransferase compare
PS417_04380 +1.7 4.3 ABC transporter permease compare
PS417_14070 +1.2 1.1 hypothetical protein compare
PS417_19825 +1.1 8.5 ATPase AAA compare
PS417_00370 +1.1 1.9 hypothetical protein compare
PS417_05825 +1.1 2.8 cytochrome D ubiquinol oxidase subunit II compare
PS417_03550 +1.1 3.1 hypothetical protein compare
PS417_01115 +1.1 2.5 serine acetyltransferase compare
PS417_27595 +1.1 2.6 recombinase XerC compare
PS417_13010 +1.0 2.2 alpha/beta hydrolase compare
PS417_27690 +1.0 4.0 XRE family transcriptional regulator compare
PS417_00650 +1.0 1.3 LysR family transcriptional regulator compare
PS417_10720 +1.0 5.4 chemotaxis protein CheY compare
PS417_14255 +1.0 1.9 phosphate import ATP-binding protein PstB compare
PS417_11825 +0.9 2.2 transcriptional regulator compare
PS417_09865 +0.9 1.6 hypothetical protein compare
PS417_13255 +0.9 2.3 ABC transporter compare
PS417_02160 +0.9 1.3 hypothetical protein compare
PS417_27005 +0.8 1.4 membrane protein compare
PS417_19695 +0.8 4.4 flagellar biosynthesis sigma factor compare
PS417_27870 +0.8 2.9 ATP-dependent DNA helicase RecG compare
PS417_01545 +0.8 2.2 adenine glycosylase compare
PS417_19425 +0.8 0.9 allantoicase compare
PS417_09580 +0.8 2.1 tyrosyl-trna synthetase compare
PS417_26120 +0.8 1.5 hypothetical protein compare
PS417_22630 +0.8 2.2 hypothetical protein compare
PS417_19600 +0.8 1.4 exonuclease compare
PS417_02365 +0.8 2.2 hypothetical protein compare
PS417_26400 +0.8 2.7 metal-dependent hydrolase compare
PS417_21425 +0.8 1.7 4-amino-4-deoxychorismate lyase compare
PS417_12805 +0.8 5.0 glycogen branching protein compare
PS417_06505 +0.7 2.0 membrane protein compare
PS417_11440 +0.7 1.4 hypothetical protein compare
PS417_02955 +0.7 2.0 hypothetical protein compare
PS417_00510 +0.7 1.0 membrane protein compare
PS417_01875 +0.7 1.3 polyhydroxyalkanoic acid system protein compare
PS417_07560 +0.7 1.3 universal stress protein UspA compare
PS417_06635 +0.7 1.3 ferredoxin compare
PS417_00550 +0.7 1.1 hypothetical protein compare
PS417_26175 +0.7 1.1 sarcosine oxidase subunit gamma compare
PS417_17590 +0.7 1.4 ABC transporter substrate-binding protein compare
PS417_11185 +0.7 2.1 dimethylallyltransferase compare
PS417_10390 +0.7 2.1 RNA polymerase subunit sigma24 compare
PS417_02225 +0.7 1.8 bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase compare
PS417_13895 +0.7 1.7 chemotaxis protein CheB compare
PS417_17830 +0.7 2.0 4-hydroxyphenylacetate isomerase compare
PS417_19740 +0.7 3.1 flagellar biosynthesis protein flip compare
PS417_21570 +0.7 3.2 flagellar basal body rod protein FlgB compare
PS417_12870 +0.7 1.5 enoyl-CoA hydratase compare
PS417_26770 +0.7 1.6 tRNA (guanine-N7)-methyltransferase compare
PS417_21585 +0.7 4.2 flagellar basal body P-ring biosynthesis protein FlgA compare
PS417_08420 +0.7 3.0 lipoprotein compare
PS417_22895 +0.7 4.3 tyrosine recombinase XerD compare
PS417_15495 +0.7 3.3 FAD-dependent oxidoreductase compare
PS417_26145 +0.7 1.8 hypothetical protein compare
PS417_05610 +0.7 2.2 bacterioferritin compare
PS417_00545 +0.7 1.8 hypothetical protein compare
PS417_05635 +0.7 2.7 membrane protein compare
PS417_14080 +0.7 2.7 hypothetical protein compare
PS417_07700 +0.6 1.3 chromosome partitioning protein ParA compare
PS417_26900 +0.6 1.0 L-cystine transporter tcyP compare
PS417_16370 +0.6 3.7 chemotaxis protein CheY compare
PS417_22680 +0.6 1.6 chemotaxis protein CheY compare
PS417_02040 +0.6 1.5 3-hydroxylacyl-ACP dehydratase compare
PS417_20115 +0.6 2.7 hypothetical protein compare
PS417_27180 +0.6 1.3 peroxidase compare
PS417_24030 +0.6 1.0 MFS transporter compare
PS417_22870 +0.6 1.8 lipoprotein compare
PS417_00455 +0.6 1.1 hypothetical protein compare
PS417_02720 +0.6 0.8 TetR family transcriptional regulator compare
PS417_17980 +0.6 1.6 ABC transporter permease compare
PS417_19830 +0.6 3.0 flagellar assembly protein FliT compare
PS417_17430 +0.6 3.2 aldehyde dehydrogenase compare
PS417_19725 +0.6 1.5 flagellar biosynthesis protein FlhB compare
PS417_07985 +0.6 0.9 AbrB family transcriptional regulator compare
PS417_23150 +0.6 1.4 Cro/Cl family transcriptional regulator compare
PS417_17795 +0.6 1.2 ABC transporter permease compare
PS417_22155 +0.6 2.4 ATPase compare
PS417_04365 +0.6 1.1 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase compare
PS417_24840 +0.6 1.2 hypothetical protein compare
PS417_09210 +0.6 1.0 TetR family transcriptional regulator compare
PS417_05200 +0.6 2.2 DNA recombination protein RecO compare
PS417_02045 +0.6 1.5 3-oxoacyl-ACP synthase compare
PS417_15095 +0.6 1.7 hypothetical protein compare
PS417_19975 +0.6 1.5 hypothetical protein compare
PS417_14140 +0.6 1.3 membrane protein compare
PS417_23755 +0.6 1.0 membrane protein compare
PS417_01285 +0.6 0.8 haloacid dehalogenase compare
PS417_15100 +0.6 1.4 BatB protein compare
PS417_04390 +0.6 2.3 toluene tolerance protein compare
PS417_18490 +0.6 2.4 hypothetical protein compare
PS417_10840 +0.6 1.2 amidase compare
PS417_20130 +0.6 4.4 dehydrogenase compare
PS417_13645 +0.6 1.8 ABC transporter compare
PS417_25825 +0.6 2.2 sulfurtransferase compare
PS417_16515 +0.6 1.7 Clp protease ClpS compare
PS417_24895 +0.6 1.0 hypothetical protein compare
PS417_07140 +0.6 2.1 peptidase M48 compare
PS417_15915 +0.6 1.1 hypothetical protein compare
PS417_23535 +0.6 2.0 glutathione peroxidase compare
PS417_04915 +0.6 0.9 glutamine ABC transporter ATP-binding protein compare
PS417_26615 +0.5 2.0 triphosphoribosyl-dephospho-CoA synthase compare
PS417_27300 +0.5 0.7 cell division protein ZapA compare
PS417_12660 +0.5 1.2 hypothetical protein compare
PS417_25780 +0.5 1.3 molecular chaperone DnaJ compare
PS417_13885 +0.5 2.0 chemotaxis protein CheY compare
PS417_22005 +0.5 1.6 epimerase compare
PS417_14315 +0.5 1.1 2,5-dioxovalerate dehydrogenase compare
PS417_16180 +0.5 1.9 MFS transporter compare
PS417_16750 +0.5 1.1 ABC transporter ATP-binding protein compare
PS417_21065 +0.5 1.7 3-methylitaconate isomerase compare
PS417_18395 +0.5 1.4 D-ribose ABC transporter, permease component RbsC (from data) compare
PS417_09140 +0.5 1.1 biopolymer transporter ExbB compare
PS417_18800 +0.5 1.3 hypothetical protein compare
PS417_00490 +0.5 2.2 iron ABC transporter ATP-binding protein compare
PS417_12930 +0.5 1.7 LpxA family transferase compare
PS417_17140 +0.5 1.7 LysR family transcriptional regulator compare
PS417_09160 +0.5 1.1 GNAT family acetyltransferase compare
PS417_10135 +0.5 1.2 phage tail protein compare
PS417_08415 +0.5 3.3 hypothetical protein compare
PS417_19795 +0.5 3.4 flagellar assembly protein FliH compare
PS417_12580 +0.5 1.9 membrane protein compare
PS417_19510 +0.5 1.7 N-acetylmuramoyl-L-alanine amidase compare
PS417_17510 +0.5 3.0 histidine kinase compare
PS417_21990 +0.5 1.1 LacI family transcriptional regulator compare
PS417_21180 +0.5 1.6 short-chain dehydrogenase compare
PS417_14100 +0.5 2.3 alpha-ketoglutarate-dependent dioxygenase compare
PS417_05120 +0.5 1.6 RNA polymerase subunit sigma-24 compare
PS417_11770 +0.5 0.9 pyruvate dehydrogenase compare
PS417_04500 +0.5 0.9 hypothetical protein compare
PS417_06125 +0.5 1.7 hypothetical protein compare
PS417_17470 +0.5 1.3 LuxR family transcriptional regulator compare
PS417_01420 +0.5 3.1 histidine kinase compare
PS417_25775 +0.5 1.8 lipoprotein compare
PS417_22990 +0.5 1.0 iron dicitrate transport regulator FecR compare
PS417_10245 +0.5 0.9 hypothetical protein compare
PS417_01400 +0.5 1.3 hypothetical protein compare
PS417_15090 +0.5 1.8 hypothetical protein compare
PS417_25290 +0.5 1.8 hypothetical protein compare
PS417_08665 +0.5 1.3 molybdopterin-guanine dinucleotide biosynthesis protein A compare
PS417_18545 +0.5 1.9 cell division protein compare
PS417_13855 +0.5 0.9 acetyl-CoA acetyltransferase compare
PS417_00075 +0.5 1.5 hypothetical protein compare
PS417_01300 +0.5 1.7 thioesterase compare
PS417_10875 +0.5 3.0 AraC family transcriptional regulator compare
PS417_26335 +0.5 1.0 BetI family transcriptional regulator compare
PS417_10060 +0.5 1.4 hypothetical protein compare
PS417_13455 +0.5 1.3 alkaline proteinase inhibitor compare
PS417_19790 +0.5 1.3 ATP synthase compare
PS417_15110 +0.5 1.7 protein BatD compare
PS417_03740 +0.5 1.7 peptidylprolyl isomerase compare
PS417_03730 +0.5 1.1 phosphate acetyltransferase compare
PS417_22135 +0.5 2.6 glucose/xylose ABC transporter, permease component 1 (from data) compare
PS417_11810 +0.5 0.9 oxidoreductase compare
PS417_16320 +0.5 1.5 protein tyrosine phosphatase compare
PS417_03455 +0.5 0.8 type III secretion protein compare
PS417_05645 +0.5 2.4 LuxR family transcriptional regulator compare
PS417_08310 +0.5 1.2 alpha/beta hydrolase compare
PS417_21370 +0.5 2.6 allantoin permease compare
PS417_20650 +0.5 2.4 hypothetical protein compare
PS417_27610 +0.5 1.2 hypothetical protein compare
PS417_01620 +0.5 0.8 preprotein translocase subunit SecB compare
PS417_18980 +0.5 1.0 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PS417_14245 +0.5 1.5 hypothetical protein compare
PS417_08410 +0.5 1.0 hypothetical protein compare
PS417_02385 +0.5 0.9 esterase compare
PS417_03385 +0.4 0.8 flavin reductase compare
PS417_03450 +0.4 1.4 RNA polymerase sigma factor compare
PS417_24225 +0.4 1.3 hypothetical protein compare
PS417_17945 +0.4 0.6 hypothetical protein compare
PS417_06845 +0.4 0.8 lipoprotein compare
PS417_05015 +0.4 1.5 homogentisate 1,2-dioxygenase compare
PS417_21235 +0.4 1.7 transglutaminase compare
PS417_10110 +0.4 2.0 hypothetical protein compare
PS417_19070 +0.4 1.4 hypothetical protein compare
PS417_10985 +0.4 0.6 NADH:flavin oxidoreductase compare
PS417_01410 +0.4 2.7 transporter compare
PS417_20205 +0.4 1.8 LysR family transcriptional regulator compare
PS417_11420 +0.4 1.2 potassium transporter KefB compare
PS417_15665 +0.4 0.7 hypothetical protein compare
PS417_16870 +0.4 1.4 short-chain dehydrogenase compare
PS417_13600 +0.4 1.4 hypothetical protein compare
PS417_26320 +0.4 3.1 ABC transporter permease compare
PS417_04945 +0.4 2.1 fimbrial chaperone protein compare
PS417_15985 +0.4 1.9 amino acid transporter compare
PS417_21555 +0.4 2.9 flagellar hook protein FlgE compare
PS417_27680 +0.4 2.0 acetyl-CoA hydrolase compare
PS417_13920 +0.4 2.7 hypothetical protein compare
PS417_02980 +0.4 0.8 chemotaxis protein compare
PS417_20340 +0.4 1.0 hypothetical protein compare
PS417_02370 +0.4 0.9 ADP-ribose pyrophosphatase compare
PS417_26240 +0.4 0.9 N-methylproline demethylase compare
PS417_11555 +0.4 1.6 (2Fe-2S)-binding protein compare
PS417_11950 +0.4 0.7 hypothetical protein compare
PS417_12635 +0.4 1.4 alkanesulfonate monooxygenase compare
PS417_18025 +0.4 0.9 cytochrome C compare
PS417_06455 +0.4 1.9 Fe(II)-dependent oxygenase compare
PS417_05525 +0.4 1.7 Fis family transcriptional regulator compare


Specific Phenotypes

For 6 genes in this experiment

For nitrogen source Putrescine Dihydrochloride in Pseudomonas simiae WCS417

For nitrogen source Putrescine Dihydrochloride across organisms