Experiment set5IT084 for Pseudomonas putida KT2440

Compare to:

Levulinic Acid carbon source

200 most important genes:

  gene name fitness t score description  
PP_0293 -7.1 -4.9 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0184 -6.6 -6.4 Argininosuccinate lyase compare
PP_1988 -6.3 -7.5 3-isopropylmalate dehydrogenase compare
PP_5289 -6.2 -7.3 Acetylglutamate kinase compare
PP_2791 -6.0 -7.2 4-hydroxypentanoyl-CoA kinase, subunit LvaA (from data) compare
PP_0966 -5.8 -11.1 Histidinol dehydrogenase compare
PP_1986 -5.7 -3.9 3-isopropylmalate dehydratase small subunit compare
PP_5348 -5.6 -10.8 Transcriptional regulator, LysR family compare
PP_3754 -5.6 -7.6 Beta-ketothiolase BktB compare
PP_1995 -5.6 -10.0 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_0967 -5.5 -12.2 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0082 -5.5 -6.5 tryptophan synthase alpha chain compare
PP_3511 -5.5 -10.4 Branched-chain-amino-acid aminotransferase compare
PP_4799 -5.5 -3.8 putative Muramoyltetrapeptide carboxypeptidase compare
PP_1088 -5.4 -16.2 Argininosuccinate synthase compare
PP_4909 -5.4 -9.7 phosphoserine phosphatase compare
PP_0290 -5.3 -10.8 Imidazole glycerol phosphate synthase subunit HisH compare
PP_2334 -5.3 -8.1 2-methylisocitrate lyase compare
PP_2793 -5.3 -3.6 Acyl-CoA dehydrogenase family protein compare
PP_2335 -5.2 -11.1 methylcitrate synthase compare
PP_0417 -5.2 -20.2 Anthranilate synthase component 1 compare
PP_5347 -5.2 -12.5 pyruvate carboxylase subunit A compare
PP_3286 -5.2 -7.9 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_1025 -5.2 -16.1 2-isopropylmalate synthase compare
PP_4890 -5.1 -7.0 ATP phosphoribosyltransferase regulatory subunit compare
PP_5014 -5.1 -6.0 Phosphoribosyl-AMP cyclohydrolase compare
PP_0422 -5.0 -7.6 Indole-3-glycerol phosphate synthase compare
PP_4679 -4.9 -8.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5346 -4.9 -11.4 pyruvate carboxylase subunit B compare
PP_2336 -4.9 -5.8 aconitate hydratase 1 compare
PP_5185 -4.8 -9.9 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4680 -4.8 -16.6 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2337 -4.7 -4.6 aconitate isomerase compare
PP_0083 -4.7 -9.5 tryptophan synthase beta chain compare
PP_2333 -4.6 -8.3 GntR family transcriptional regulator compare
PP_4678 -4.6 -18.0 Ketol-acid reductoisomerase compare
PP_4700 -4.6 -5.4 pantothenate synthetase compare
PP_2790 -4.5 -9.3 Sigma-54 dependent sensory box protein compare
PP_0289 -4.5 -9.1 Imidazoleglycerol-phosphate dehydratase compare
PP_0420 -4.5 -13.4 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4058 -4.4 -15.0 1,4-alpha-glucan branching enzyme compare
PP_0965 -4.3 -11.1 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_1079 -4.3 -9.0 Ornithine carbamoyltransferase compare
PP_4723 -4.3 -8.1 Carbamoyl-phosphate synthase large chain compare
PP_2794 -4.2 -4.5 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_5128 -4.2 -9.1 Dihydroxy-acid dehydratase compare
PP_5097 -4.2 -16.6 homoserine O-acetyltransferase compare
PP_2371 -4.2 -9.2 Sulphite reductase hemoprotein, beta subunit compare
PP_5098 -4.2 -11.3 methionine biosynthesis protein MetW compare
PP_0421 -4.1 -8.4 Anthranilate phosphoribosyltransferase compare
PP_3999 -4.1 -10.1 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_5015 -4.1 -5.9 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_2433 -4.1 -5.4 conserved protein of unknown function compare
PP_0691 -4.1 -7.8 Glutamate 5-kinase compare
PP_1985 -4.0 -7.6 3-isopropylmalate dehydratase large subunit compare
PP_2168 -4.0 -14.6 Transaldolase compare
PP_0292 -4.0 -4.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4628 -3.8 -7.0 conserved protein of unknown function compare
PP_4724 -3.7 -5.0 Carbamoyl-phosphate synthase small chain compare
PP_2001 -3.4 -9.2 O-succinylhomoserine sulfhydrylase compare
PP_4693 -3.4 -7.2 RNA polymerase-binding transcription factor DksA compare
PP_0339 -3.3 -2.3 Pyruvate dehydrogenase E1 component compare
PP_3753 -3.3 -5.6 Transcriptional regulator, AraC family compare
PP_3122 -3.1 -8.2 acetoacetyl CoA-transferase (subunit A) compare
PP_4699 -3.0 -8.3 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_5303 -2.9 -6.4 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_4008 -2.8 -11.0 ATP-dependent serine protease compare
PP_4696 -2.8 -9.6 Nitrogen regulation protein NR(I) compare
PP_5095 -2.7 -3.8 pyrroline-5-carboxylate reductase compare
PP_3121 -2.7 -5.7 transcriptional regulator, LysR family compare
PP_2000 -2.7 -3.5 amidophosphoribosyl transferase compare
PP_5155 -2.6 -3.0 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4999 -2.6 -2.9 dihydroorotase-like protein compare
PP_3755 -2.4 -8.9 3-hydroxybutyryl-CoA dehydrogenase compare
PP_3123 -2.4 -8.6 acetoacetyl CoA-transferase (subunit B) compare
PP_4993 -2.3 -7.1 Glutathione synthetase compare
PP_2327 -2.3 -8.9 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1656 -2.3 -4.5 ATP:GTP 3'-pyrophosphotransferase compare
PP_2302 -2.2 -8.9 DNA-binding, ATP-dependent protease compare
PP_1589 -2.1 -9.9 uridylyltransferase compare
PP_2370 -2.1 -3.3 conserved protein of unknown function compare
PP_4779 -2.0 -14.2 AMP nucleosidase compare
PP_3925 -1.9 -11.0 conserved protein of unknown function compare
PP_4342 -1.9 -7.6 flagellar synthesis regulator, putative ATPase compare
PP_2328 -1.9 -6.9 Phosphoadenosine phosphosulfate reductase compare
PP_4964 -1.9 -4.1 D-erythrose 4-phosphate dehydrogenase compare
PP_3926 -1.7 -2.1 short-chain dehydrogenase compare
PP_0291 -1.7 -1.8 conserved protein of unknown function compare
PP_4902 -1.7 -4.2 Oligoribonuclease compare
PP_5328 -1.6 -3.7 putative phosphate transport system permease protein compare
PP_4120 -1.6 -5.7 NADH-quinone oxidoreductase subunit B compare
PP_4129 -1.6 -5.5 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_1664 -1.6 -4.8 phosphoribosylglycinamide formyltransferase 1 compare
PP_4126 -1.6 -2.8 NADH-quinone oxidoreductase subunit I compare
PP_3519 -1.6 -2.2 putative Lipoprotein compare
PP_3946 -1.5 -3.1 HTH-type transcriptional repressor NicR compare
PP_0760 -1.5 -3.0 conserved membrane protein of unknown function compare
PP_4124 -1.5 -6.2 NADH-quinone oxidoreductase subunit G compare
PP_4121 -1.5 -6.5 NADH-quinone oxidoreductase subunit C/D compare
PP_5329 -1.5 -4.4 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_0949 -1.4 -7.0 putative ATP-binding protein UPF0042 compare
PP_5058 -1.4 -7.6 Carboxy-terminal-processing protease compare
PP_1198 -1.4 -3.9 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_3539 -1.4 -4.8 putative Transcriptional regulator compare
PP_4122 -1.4 -2.9 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_3662 -1.4 -7.9 conserved protein of unknown function compare
PP_4098 -1.3 -3.5 UvrABC system protein C compare
PP_2217 -1.3 -3.6 enoyl-CoA hydratase compare
PP_0719 -1.3 -3.0 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_3102 -1.3 -5.1 conserved protein of unknown function compare
PP_1142 -1.3 -1.8 conserved protein of unknown function compare
PP_1268 -1.3 -2.6 putative HtrA suppressor protein sohA compare
PP_1695 -1.3 -7.7 putative Sodium-solute symporter/sensory box histidine kinase/response regulator compare
PP_3248 -1.2 -5.5 Dyp-type peroxidase family protein compare
PP_0048 -1.2 -1.8 conserved protein of unknown function compare
PP_0406 -1.2 -3.6 Nucleotidyltransferase family protein compare
PP_1635 -1.2 -4.1 DNA-binding response regulator compare
PP_4379 -1.2 -4.0 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_2402 -1.2 -2.8 putative Sensor histidine kinase compare
PP_2253 -1.2 -2.8 Transcriptional regulator, GntR family compare
PP_4471 -1.2 -4.5 Magnesium transporter compare
PP_4131 -1.2 -5.3 NADH-quinone oxidoreductase subunit N compare
PP_3365 -1.2 -1.9 Acetolactate synthase compare
PP_0725 -1.1 -5.3 conserved hypothetical TPR repeat protein compare
PP_4880 -1.1 -8.5 exoribonuclease R compare
PP_5085 -1.1 -6.0 malic enzyme B compare
PP_1428 -1.1 -3.1 Sigma factor AlgU negative regulatory protein compare
PP_4546 -1.1 -4.8 ATP-dependent helicase HrpA compare
PP_1216 -1.1 -2.3 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_1055 -1.1 -1.7 Type II secretion pathway protein GspN compare
PP_4481 -1.1 -6.2 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_1654 -1.1 -2.6 cysteine synthase B compare
PP_4227 -1.0 -2.3 conserved protein of unknown function compare
PP_4204 -1.0 -2.9 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_4130 -1.0 -2.9 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_0122 -1.0 -2.8 conserved exported protein of unknown function compare
PP_0848 -1.0 -2.1 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_5216 -1.0 -1.4 exopolyphosphatase compare
PP_3730 -1.0 -2.5 Transcriptional regulatory protein AruR compare
PP_1734 -1.0 -2.8 Probable septum site-determining protein MinC compare
PP_5331 -1.0 -3.2 Long-chain acyl-CoA thioester hydrolase compare
PP_1066 -0.9 -3.6 C4-dicarboxylate transport transcriptional regulatory protein compare
PP_1733 -0.9 -3.4 membrane ATPase of the MinC-MinD-MinE system compare
PP_0627 -0.9 -1.9 conserved protein of unknown function compare
PP_3876 -0.9 -2.2 conserved protein of unknown function compare
PP_1766 -0.9 -4.6 methylthioribose-1-phosphate isomerase compare
PP_0832 -0.9 -3.3 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_0680 -0.9 -7.4 ATP-dependent protease-like protein compare
PP_1020 -0.9 -2.2 putative glucose-6-phosphate 1-epimerase compare
PP_3649 -0.9 -3.9 Transcriptional regulator, GntR family compare
PP_2306 -0.9 -2.9 conserved exported protein of unknown function compare
PP_1208 -0.9 -3.0 conserved protein of unknown function, SlyX family compare
PP_5294 -0.9 -3.9 Ribonuclease PH compare
PP_0833 -0.9 -1.5 queuine tRNA-ribosyltransferase compare
PP_5327 -0.8 -3.3 putative phosphate ABC transporter, permease subunit compare
PP_5423 -0.8 -2.5 conserved membrane protein of unknown function compare
PP_0040 -0.8 -2.4 hypothetical protein compare
PP_1237 -0.8 -2.4 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_4009 -0.8 -2.9 ATP-dependent Clp protease adapter protein ClpS compare
PP_3312 -0.8 -1.3 putative Heat shock protein compare
PP_3790 -0.8 -4.7 diaminopimelate epimerase compare
PP_5350 -0.8 -3.6 Transcriptional regulator, RpiR family compare
PP_3590 -0.8 -4.2 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_5168 -0.8 -2.7 sulfate/thiosulfate import ATP-binding protein compare
PP_1609 -0.8 -1.8 conserved protein of unknown function compare
PP_0393 -0.8 -2.7 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_1021 -0.8 -3.0 DNA-binding transcriptional regulator compare
PP_4895 -0.8 -3.2 tRNA dimethylallyltransferase compare
PP_3840 -0.8 -1.5 conserved protein of unknown function compare
PP_3417 -0.8 -3.4 D-gluconate transporter compare
PP_1217 -0.8 -3.2 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_4776 -0.8 -3.9 AsnC family transcriptional regulator compare
PP_1076 -0.8 -4.2 aquaglyceroporin compare
PP_1812 -0.8 -1.7 conserved protein of unknown function compare
PP_1075 -0.8 -5.2 glycerol kinase compare
PP_4004 -0.8 -2.3 DNA translocase FtsK compare
PP_0319 -0.8 -2.1 conserved protein of unknown function compare
PP_1304 -0.8 -4.6 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_5202 -0.7 -2.3 putative cell division protein compare
PP_1719 -0.7 -5.6 Tail-specific protease prc compare
PP_4632 -0.7 -4.2 dihydrofolate reductase / dihydromonapterin reductase compare
PP_0063 -0.7 -3.2 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_5035 -0.7 -3.0 Histidine utilization repressor compare
PP_1128 -0.7 -1.8 OmpA family protein compare
PP_1568 -0.7 -1.1 conserved protein of unknown function compare
PP_2378 -0.7 -2.4 Fe/S biogenesis protein NfuA compare
PP_2324 -0.7 -2.7 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_0484 -0.7 -3.5 transporter of an unknown substrate compare
PP_4482 -0.7 -2.7 Transcriptional regulator, AraC family compare
PP_4966 -0.7 -2.1 transcriptional regulator of methionine metabolism compare
PP_4362 -0.7 -3.1 conserved protein of unknown function compare
PP_1763 -0.7 -2.5 putative oxidoreductase compare
PP_2442 -0.7 -1.7 conserved protein of unknown function, DUF480 family compare
PP_0303 -0.7 -2.9 dehydrocarnitine cleavage enzyme compare
PP_3903 -0.7 -2.0 conserved protein of unknown function compare
PP_0022 -0.7 -1.0 hypothetical protein compare
PP_5310 -0.7 -4.3 junction-specific ATP-dependent DNA helicase compare
PP_1381 -0.7 -1.1 4-carboxymuconolactone decarboxylase compare
PP_2060 -0.7 -2.0 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_0001 -0.7 -0.9 probable chromosome-partitioning protein compare


Specific Phenotypes

For 14 genes in this experiment

For carbon source Levulinic Acid in Pseudomonas putida KT2440

For carbon source Levulinic Acid across organisms