Experiment set5IT083 for Pseudomonas putida KT2440

Compare to:

Levulinic Acid carbon source

200 most important genes:

  gene name fitness t score description  
PP_5289 -6.4 -6.2 Acetylglutamate kinase compare
PP_2794 -6.3 -4.3 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_2335 -6.1 -8.4 methylcitrate synthase compare
PP_4890 -5.8 -5.6 ATP phosphoribosyltransferase regulatory subunit compare
PP_2791 -5.7 -6.8 4-hydroxypentanoyl-CoA kinase, subunit LvaA (from data) compare
PP_3754 -5.7 -6.8 Beta-ketothiolase BktB compare
PP_0290 -5.7 -9.5 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0967 -5.7 -10.9 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0966 -5.7 -11.5 Histidinol dehydrogenase compare
PP_0082 -5.6 -5.5 tryptophan synthase alpha chain compare
PP_1986 -5.5 -3.8 3-isopropylmalate dehydratase small subunit compare
PP_2334 -5.5 -6.6 2-methylisocitrate lyase compare
PP_0422 -5.5 -7.5 Indole-3-glycerol phosphate synthase compare
PP_4678 -5.4 -15.3 Ketol-acid reductoisomerase compare
PP_1985 -5.4 -6.4 3-isopropylmalate dehydratase large subunit compare
PP_1088 -5.4 -15.5 Argininosuccinate synthase compare
PP_0420 -5.4 -12.5 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0184 -5.4 -10.3 Argininosuccinate lyase compare
PP_5348 -5.4 -10.3 Transcriptional regulator, LysR family compare
PP_4799 -5.3 -3.7 putative Muramoyltetrapeptide carboxypeptidase compare
PP_1995 -5.3 -10.2 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_3511 -5.3 -10.2 Branched-chain-amino-acid aminotransferase compare
PP_1988 -5.3 -10.1 3-isopropylmalate dehydrogenase compare
PP_0691 -5.3 -7.2 Glutamate 5-kinase compare
PP_4909 -5.3 -9.4 phosphoserine phosphatase compare
PP_5347 -5.3 -11.2 pyruvate carboxylase subunit A compare
PP_1025 -5.1 -16.9 2-isopropylmalate synthase compare
PP_5015 -5.1 -6.0 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_4680 -5.0 -14.4 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4700 -4.9 -3.4 pantothenate synthetase compare
PP_5346 -4.8 -10.8 pyruvate carboxylase subunit B compare
PP_0965 -4.8 -10.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_5014 -4.8 -5.7 Phosphoribosyl-AMP cyclohydrolase compare
PP_0417 -4.8 -19.9 Anthranilate synthase component 1 compare
PP_5098 -4.7 -10.1 methionine biosynthesis protein MetW compare
PP_5097 -4.7 -16.2 homoserine O-acetyltransferase compare
PP_2790 -4.7 -6.6 Sigma-54 dependent sensory box protein compare
PP_2336 -4.7 -5.6 aconitate hydratase 1 compare
PP_3286 -4.7 -8.4 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_3999 -4.6 -7.6 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_2333 -4.4 -7.9 GntR family transcriptional regulator compare
PP_0421 -4.4 -8.6 Anthranilate phosphoribosyltransferase compare
PP_0292 -4.4 -6.0 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0293 -4.3 -5.1 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0083 -4.3 -9.2 tryptophan synthase beta chain compare
PP_1079 -4.3 -8.7 Ornithine carbamoyltransferase compare
PP_2793 -4.3 -4.1 Acyl-CoA dehydrogenase family protein compare
PP_0289 -4.2 -7.9 Imidazoleglycerol-phosphate dehydratase compare
PP_5185 -4.2 -8.7 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_2337 -4.1 -4.9 aconitate isomerase compare
PP_2168 -4.1 -14.0 Transaldolase compare
PP_4693 -4.1 -10.3 RNA polymerase-binding transcription factor DksA compare
PP_4724 -4.1 -4.0 Carbamoyl-phosphate synthase small chain compare
PP_2001 -4.1 -10.7 O-succinylhomoserine sulfhydrylase compare
PP_5155 -3.9 -5.1 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_4999 -3.9 -2.7 dihydroorotase-like protein compare
PP_4723 -3.9 -8.9 Carbamoyl-phosphate synthase large chain compare
PP_5128 -3.8 -8.7 Dihydroxy-acid dehydratase compare
PP_4679 -3.8 -8.6 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4628 -3.8 -6.4 conserved protein of unknown function compare
PP_2371 -3.7 -9.4 Sulphite reductase hemoprotein, beta subunit compare
PP_4058 -3.6 -15.2 1,4-alpha-glucan branching enzyme compare
PP_3753 -3.6 -8.7 Transcriptional regulator, AraC family compare
PP_4699 -3.4 -7.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_5303 -3.2 -7.2 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_2327 -3.1 -9.0 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_2433 -3.0 -2.6 conserved protein of unknown function compare
PP_0339 -3.0 -3.5 Pyruvate dehydrogenase E1 component compare
PP_4008 -2.7 -10.7 ATP-dependent serine protease compare
PP_3123 -2.7 -9.8 acetoacetyl CoA-transferase (subunit B) compare
PP_3122 -2.7 -6.6 acetoacetyl CoA-transferase (subunit A) compare
PP_5095 -2.7 -3.3 pyrroline-5-carboxylate reductase compare
PP_2000 -2.6 -3.0 amidophosphoribosyl transferase compare
PP_3755 -2.4 -6.9 3-hydroxybutyryl-CoA dehydrogenase compare
PP_0291 -2.3 -2.9 conserved protein of unknown function compare
PP_2370 -2.3 -3.0 conserved protein of unknown function compare
PP_2328 -2.2 -7.0 Phosphoadenosine phosphosulfate reductase compare
PP_2302 -2.2 -8.2 DNA-binding, ATP-dependent protease compare
PP_4342 -2.2 -6.9 flagellar synthesis regulator, putative ATPase compare
PP_0760 -2.2 -3.7 conserved membrane protein of unknown function compare
PP_4696 -2.1 -7.5 Nitrogen regulation protein NR(I) compare
PP_4964 -2.0 -5.7 D-erythrose 4-phosphate dehydrogenase compare
PP_1664 -2.0 -4.5 phosphoribosylglycinamide formyltransferase 1 compare
PP_1656 -2.0 -3.8 ATP:GTP 3'-pyrophosphotransferase compare
PP_4779 -2.0 -13.6 AMP nucleosidase compare
PP_3925 -2.0 -12.2 conserved protein of unknown function compare
PP_1198 -1.9 -4.7 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_4131 -1.9 -7.8 NADH-quinone oxidoreductase subunit N compare
PP_0719 -1.9 -3.7 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_4993 -1.8 -6.8 Glutathione synthetase compare
PP_0949 -1.8 -8.3 putative ATP-binding protein UPF0042 compare
PP_1589 -1.7 -8.7 uridylyltransferase compare
PP_5225 -1.7 -2.6 frataxin compare
PP_1568 -1.7 -1.9 conserved protein of unknown function compare
PP_4828 -1.7 -2.6 Precorrin-8X methylmutase compare
PP_4121 -1.6 -7.3 NADH-quinone oxidoreductase subunit C/D compare
PP_4122 -1.6 -3.4 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_1734 -1.6 -5.0 Probable septum site-determining protein MinC compare
PP_3926 -1.5 -2.2 short-chain dehydrogenase compare
PP_3121 -1.4 -4.4 transcriptional regulator, LysR family compare
PP_0593 -1.4 -1.7 putative ribosome-binding factor compare
PP_3903 -1.4 -2.4 conserved protein of unknown function compare
PP_1635 -1.4 -3.1 DNA-binding response regulator compare
PP_3539 -1.4 -4.4 putative Transcriptional regulator compare
PP_5331 -1.4 -3.9 Long-chain acyl-CoA thioester hydrolase compare
PP_4124 -1.4 -5.9 NADH-quinone oxidoreductase subunit G compare
PP_4546 -1.4 -5.3 ATP-dependent helicase HrpA compare
PP_4776 -1.4 -8.2 AsnC family transcriptional regulator compare
PP_5350 -1.3 -3.9 Transcriptional regulator, RpiR family compare
PP_5216 -1.3 -2.5 exopolyphosphatase compare
PP_4130 -1.3 -4.2 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_1764 -1.3 -3.1 Phosphoglycolate phosphatase 2 compare
PP_1142 -1.3 -1.8 conserved protein of unknown function compare
PP_4009 -1.3 -3.2 ATP-dependent Clp protease adapter protein ClpS compare
PP_0833 -1.2 -2.7 queuine tRNA-ribosyltransferase compare
PP_3649 -1.2 -3.4 Transcriptional regulator, GntR family compare
PP_4880 -1.2 -8.5 exoribonuclease R compare
PP_4098 -1.2 -2.8 UvrABC system protein C compare
PP_3519 -1.2 -1.7 putative Lipoprotein compare
PP_2217 -1.2 -3.5 enoyl-CoA hydratase compare
PP_4471 -1.1 -3.9 Magnesium transporter compare
PP_5085 -1.1 -6.9 malic enzyme B compare
PP_3102 -1.1 -4.2 conserved protein of unknown function compare
PP_0848 -1.1 -2.8 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_1366 -1.1 -1.9 Transcriptional regulator MvaT, P16 subunit compare
PP_0680 -1.1 -8.6 ATP-dependent protease-like protein compare
PP_5058 -1.1 -5.7 Carboxy-terminal-processing protease compare
PP_1075 -1.1 -7.2 glycerol kinase compare
PP_4004 -1.0 -3.6 DNA translocase FtsK compare
PP_5329 -1.0 -3.1 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_3662 -1.0 -4.8 conserved protein of unknown function compare
PP_2313 -1.0 -2.2 conserved membrane protein of unknown function compare
PP_3603 -1.0 -5.5 Transcriptional regulator, GntR family compare
PP_2378 -1.0 -2.9 Fe/S biogenesis protein NfuA compare
PP_1695 -1.0 -5.8 putative Sodium-solute symporter/sensory box histidine kinase/response regulator compare
PP_0122 -1.0 -3.2 conserved exported protein of unknown function compare
PP_4120 -1.0 -2.9 NADH-quinone oxidoreductase subunit B compare
PP_5294 -1.0 -4.5 Ribonuclease PH compare
PP_5093 -0.9 -1.5 twitching motility protein compare
PP_0832 -0.9 -4.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_1217 -0.9 -4.2 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_2429 -0.9 -2.3 putative Membrane protein compare
PP_4129 -0.9 -3.5 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_1083 -0.9 -3.7 (2Fe-2S)-binding protein compare
PP_4126 -0.9 -2.0 NADH-quinone oxidoreductase subunit I compare
PP_0276 -0.9 -1.4 Transcriptional regulator, Cro/CI family compare
PP_3790 -0.9 -5.3 diaminopimelate epimerase compare
PP_5505 -0.9 -1.7 conserved transmembrane protein of unknown function compare
PP_4481 -0.9 -4.4 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_2681 -0.9 -1.4 coenzyme PQQ synthesis protein D compare
PP_3248 -0.9 -2.5 Dyp-type peroxidase family protein compare
PP_1097 -0.9 -1.6 Methionine--tRNA ligase compare
PP_1291 -0.8 -4.8 PhoH family protein compare
PP_3946 -0.8 -1.2 HTH-type transcriptional repressor NicR compare
PP_0787 -0.8 -3.6 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_4681 -0.8 -2.1 conserved protein of unknown function compare
PP_0725 -0.8 -3.5 conserved hypothetical TPR repeat protein compare
PP_5313 -0.8 -1.9 DNA-binding protein HU-alpha compare
PP_1271 -0.8 -2.2 putative Multidrug efflux MFS transporter compare
PP_3590 -0.8 -3.9 aromatic-amino-acid transaminase (EC 2.6.1.57) (from data) compare
PP_1353 -0.8 -3.3 conserved membrane protein of unknown function compare
PP_4204 -0.8 -2.3 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_0393 -0.8 -2.7 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_4271 -0.8 -1.2 conserved protein of unknown function compare
PP_1268 -0.8 -2.1 putative HtrA suppressor protein sohA compare
PP_2575 -0.8 -1.5 conserved exported protein of unknown function compare
PP_2340 -0.8 -3.0 conserved protein of unknown function compare
PP_1654 -0.8 -1.9 cysteine synthase B compare
PP_3105 -0.8 -2.3 conserved membrane protein of unknown function compare
PP_0673 -0.8 -1.6 conserved protein of unknown function compare
PP_1303 -0.8 -3.2 Sulfate adenylyltransferase subunit 2 compare
PP_2324 -0.8 -3.3 tyr-sensitive phospho-2-dehydro-3-deoxyheptonate aldolase compare
PP_5310 -0.8 -3.7 junction-specific ATP-dependent DNA helicase compare
PP_2497 -0.8 -1.4 conserved protein of unknown function compare
PP_0319 -0.8 -1.8 conserved protein of unknown function compare
PP_5487 -0.8 -2.8 conserved protein of unknown function compare
PP_0735 -0.8 -1.5 molybdopterin-synthase adenylyltransferase compare
PP_5453 -0.8 -1.6 conserved protein of unknown function compare
PP_0610 -0.8 -2.6 conserved exported protein of unknown function compare
PP_0406 -0.7 -2.7 Nucleotidyltransferase family protein compare
PP_1876 -0.7 -2.1 putative ATP/GTP-binding protein of the AAA+ family compare
PP_1076 -0.7 -3.8 aquaglyceroporin compare
PP_1374 -0.7 -3.3 conserved protein of unknown function compare
PP_0127 -0.7 -3.5 Thiol:disulfide interchange protein compare
PP_5327 -0.7 -3.3 putative phosphate ABC transporter, permease subunit compare
PP_1208 -0.7 -1.7 conserved protein of unknown function, SlyX family compare
PP_0096 -0.7 -4.7 oligopeptidase A compare
PP_0434 -0.7 -3.6 Anhydro-N-acetylmuramic acid kinase compare
PP_0905 -0.7 -1.0 conserved exported protein of unknown function compare
PP_4379 -0.7 -2.5 Beta-ketoacyl-acyl-carrier-protein synthase I compare
PP_2402 -0.7 -1.6 putative Sensor histidine kinase compare
PP_0914 -0.7 -4.5 GGDEF domain protein compare
PP_0566 -0.7 -1.1 translation-related factor compare
PP_4977 -0.7 -4.9 5,10-methylenetetrahydrofolate reductase compare
PP_5583 -0.7 -1.6 conserved protein of unknown function compare
PP_t12 -0.7 -0.9 tRNA-Thr compare
PP_1766 -0.7 -3.4 methylthioribose-1-phosphate isomerase compare
PP_0980 -0.7 -3.9 Probable cytosol aminopeptidase compare
PP_2631 -0.7 -1.3 putative cellulose biosynthesis, BcsF/YhjT compare
PP_1237 -0.7 -1.9 4-hydroxy-tetrahydrodipicolinate synthase compare


Specific Phenotypes

For 13 genes in this experiment

For carbon source Levulinic Acid in Pseudomonas putida KT2440

For carbon source Levulinic Acid across organisms