Experiment set5IT083 for Agrobacterium fabrum C58

Compare to:

R2A with Sodium cyanide 2.5 mM

200 most important genes:

  gene name fitness t score description  
Atu3469 -4.3 -3.0 phosphoglyceromutase compare
Atu2728 -2.9 -6.7 beta (1-->2) glucan export ATP-binding protein compare
Atu2057 -2.6 -3.9 DNA helicase II compare
Atu0434 -2.2 -4.1 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu2289 -2.2 -10.7 anthranilate synthase component I and II compare
Atu1687 -2.1 -5.4 anthranilate phosphoribosyltransferase compare
Atu2554 -1.9 -2.9 lysyl-tRNA synthetase compare
Atu0017 -1.9 -2.2 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu1688 -1.8 -4.3 indole-3-glycerol-phosphate synthase compare
Atu2800 -1.7 -1.8 precorrin-3B C17-methyltransferase compare
Atu2083 -1.7 -3.5 DNA repair protein RecN compare
Atu2684 -1.6 -2.1 hypothetical protein compare
Atu0399 -1.6 -5.4 dihydroorotase compare
Atu1714 -1.5 -2.2 exonuclease III compare
Atu1308 -1.5 -3.2 aspartate carbamoyl transferase catalytic subunit compare
Atu4616 -1.5 -1.9 dTDP-4-dehydrorhamnose reductase compare
Atu1446 -1.4 -2.4 two component response regulator compare
Atu0050 -1.4 -5.0 two component response regulator compare
Atu1589 -1.4 -5.5 aminotransferase, class I compare
Atu1163 -1.4 -2.0 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu1039 -1.4 -3.2 DNA repair protein RecO compare
Atu0103 -1.3 -8.0 penicillin-binding protein compare
Atu2796 -1.3 -5.3 precorrin-4 C11-methyltransferase compare
Atu1307 -1.3 -4.1 dihydroorotase compare
Atu1077 -1.3 -3.6 DNA repair protein compare
Atu0346 -1.2 -3.1 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu3754 -1.2 -4.9 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu2662 -1.2 -1.8 acetyltransferase compare
Atu0184 -1.2 -2.1 glucokinase compare
Atu3008 -1.2 -1.3 hypothetical protein compare
Atu0647 -1.1 -3.7 phosphoribosylamine--glycine ligase compare
Atu0040 -1.1 -1.1 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu0769 -1.1 -1.6 protoheme IX farnesyltransferase compare
Atu0025 -1.1 -1.8 hypothetical protein compare
Atu3750 -1.1 -2.5 thiamine-phosphate pyrophosphorylase compare
Atu0486 -1.1 -3.5 dihydroorotate dehydrogenase compare
Atu8138 -1.1 -1.5 hypothetical protein compare
Atu1028 -1.1 -1.9 hypothetical protein compare
Atu1686 -1.0 -6.4 peptidyl-prolyl cis-trans isomerse D compare
Atu0886 -1.0 -1.2 hypothetical protein compare
Atu1466 -1.0 -1.8 hypothetical protein compare
Atu1810 -1.0 -1.6 hypothetical protein compare
Atu4317 -1.0 -3.1 TetR family transcriptional regulator compare
Atu0298 -1.0 -3.4 orotidine 5 compare
Atu0400 -1.0 -3.4 orotate phosphoribosyltransferase compare
Atu0051 -0.9 -3.1 two component sensor kinase compare
Atu0185 -0.9 -3.8 methylglyoxal synthase compare
Atu0777 -0.9 -0.9 hypothetical protein compare
Atu3712 -0.9 -1.4 hypothetical protein compare
Atu1891 -0.9 -3.1 cobalamin biosynthesis protein compare
Atu4773 -0.9 -1.5 two component response regulator compare
Atu1588 -0.9 -4.3 homoserine dehydrogenase compare
Atu5468 -0.9 -1.8 hypothetical protein compare
Atu4166 -0.9 -1.9 UDP-glucose 4-epimerase compare
Atu2799 -0.9 -2.3 precorrin-6x reductase compare
Atu2207 -0.8 -3.8 two component sensor kinase compare
Atu1327 -0.8 -2.4 NADH-ubiquinone oxidoreductase compare
Atu2809 -0.8 -5.4 cobalamin biosynthesis protein compare
Atu4615 -0.8 -5.4 glucose-1-phosphate thymidylyltransferase compare
Atu0419 -0.8 -0.9 two component sensor kinase compare
Atu4567 -0.8 -4.8 ROK family transcriptional regulator compare
Atu3121 -0.8 -1.3 cold shock protein compare
Atu0295 -0.8 -2.2 hypothetical protein compare
Atu1513 -0.8 -2.9 ABC excinuclease subunit A compare
Atu3739 -0.8 -1.7 phosphoglycerate kinase compare
Atu2793 -0.8 -2.5 cobyrinic acid a,c-diamide synthase compare
Atu0723 -0.8 -1.2 FAD dependent oxidoreductase compare
Atu2710 -0.8 -4.3 hypothetical protein compare
Atu4896 -0.7 -1.1 acetyltransferase compare
Atu4161 -0.7 -1.7 hypothetical protein compare
Atu2832 -0.7 -2.5 tRNA modification GTPase compare
Atu3465 -0.7 -3.0 metallo-beta-lactamase superfamily protein compare
Atu1566 -0.7 -1.0 hypothetical protein compare
Atu1439 -0.7 -1.1 hypothetical protein compare
Atu3496 -0.7 -1.1 hypothetical protein compare
Atu1542 -0.7 -2.6 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu1129 -0.7 -3.3 excinuclease ABC chain C compare
Atu3598 -0.7 -1.3 thiol:disulfide interchange protein compare
Atu0038 -0.7 -3.0 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu0953 -0.7 -1.0 hypothetical protein compare
Atu1030 -0.7 -1.0 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu2804 -0.7 -4.5 cobaltochelatase subunit compare
Atu1359 -0.7 -0.9 dnaK deletion suppressor protein compare
Atu2439 -0.7 -0.7 hypothetical protein compare
Atu2682 -0.7 -2.1 hypothetical protein compare
Atu3353 -0.7 -4.5 mannose-1-phosphate guanylyltransferase compare
Atu0598 -0.7 -3.8 phosphogluconate dehydratase compare
Atu1850 -0.7 -2.5 phosphoribosylformylglycinamidine synthetase II compare
Atu2464 -0.7 -1.7 formyltetrahydrofolate deformylase compare
Atu3032 -0.7 -2.5 hypothetical protein compare
Atu1140 -0.7 -2.5 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu2036 -0.7 -4.6 acetolactate synthase III, large subunit compare
Atu0031 -0.7 -1.1 PTS system, IIA component compare
Atu2040 -0.7 -3.0 phosphoserine phosphatase compare
Atu2795 -0.7 -3.4 cobalamin biosynthetic protein compare
Atu0073 -0.7 -3.0 recF-like protein compare
Atu1447 -0.7 -1.8 two component sensor kinase compare
Atu3706 -0.7 -3.4 D-3-phosphoglycerate dehydrogenase compare
Atu2787 -0.6 -0.8 hypothetical protein compare
Atu3634 -0.6 -2.1 penicillin-binding protein dacf precursor compare
Atu4075 -0.6 -2.9 glycogen synthase compare
Atu2650 -0.6 -3.7 glycerol-3-phosphate dehydrogenase compare
Atu4711 -0.6 -3.7 two component sensor kinase compare
Atu1468 -0.6 -2.6 hypothetical protein compare
Atu1141 -0.6 -2.7 Phosphoribosylglycinamide synthetase compare
Atu1354 -0.6 -0.5 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu1845 -0.6 -2.4 phosphoribosylformylglycinamidine synthase I compare
Atu0093 -0.6 -2.0 Recombination protein compare
Atu3593 -0.6 -2.9 hypothetical protein compare
Atu0354 -0.6 -1.2 ferric uptake regulator compare
Atu3468 -0.6 -0.7 hypothetical protein compare
Atu2807 -0.6 -2.8 cob(I)alamin adenosyltransferase compare
Atu3482 -0.6 -3.0 pantoate--beta-alanine ligase compare
Atu1701 -0.6 -0.9 protein-L-isoaspartate O-methyltransferase compare
Atu4217 -0.6 -1.4 TetR family transcriptional regulator compare
Atu0062 -0.6 -2.8 transcriptional regulator, ROK family compare
Atu4618 -0.6 -4.0 dTDP-rhamnose-3,5-epimerase compare
Atu4108 -0.6 -2.7 ribonuclease D compare
Atu0043 -0.6 -1.4 imidazoleglycerol-phosphate dehydratase compare
Atu2620 -0.6 -1.0 hypothetical protein compare
Atu2267 -0.6 -2.7 hypothetical protein compare
Atu2808 -0.6 -2.9 cobyric acid synthase compare
Atu1254 -0.6 -1.2 transcriptional regulator, ArsR family compare
Atu4873 -0.6 -2.7 TetR family transcriptional regulator compare
Atu0977 -0.6 -2.3 serine protease DO-like protease compare
Atu0846 -0.6 -2.2 transcriptional regulator, MarR family compare
Atu0698 -0.6 -2.7 hypothetical protein compare
Atu4614 -0.6 -3.5 glycosyltransferase compare
Atu2798 -0.6 -1.8 precorrin-6y methyltransferase compare
Atu2183 -0.6 -4.0 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu1771 -0.6 -3.5 hypothetical protein compare
Atu0340 -0.6 -1.5 SAM dependent methyltransferase compare
Atu4878 -0.6 -2.5 hypothetical protein compare
Atu4613 -0.6 -4.4 glycosyltransferase compare
Atu0401 -0.6 -3.3 fructokinase compare
Atu1754 -0.6 -1.3 hypothetical protein compare
Atu2324 -0.6 -1.9 ureidoglycolate hydrolase compare
Atu2762 -0.6 -1.9 hypothetical protein compare
Atu0876 -0.6 -0.9 superoxide dismutase compare
Atu2802 -0.6 -2.8 precorrin-8X methylmutase compare
Atu3160 -0.6 -2.4 hypothetical protein compare
Atu0972 -0.6 -2.2 lipA protein compare
Atu8133 -0.6 -1.5 hypothetical protein compare
Atu3258 -0.6 -1.7 hypothetical protein compare
Atu3485 -0.5 -4.2 short chain dehydrogenase compare
Atu2028 -0.5 -1.9 transcriptional regulator, ArsR family compare
Atu0269 -0.5 -2.1 exodeoxyribonuclease VII large subunit compare
Atu0331 -0.5 -1.4 sigma-54 modulation protein compare
Atu0029 -0.5 -2.0 S-adenosylhomocysteine hydrolase compare
Atu4346 -0.5 -3.4 hypothetical protein compare
Atu2648 -0.5 -1.5 hypothetical protein compare
Atu3311 -0.5 -4.4 phosphomannose isomerase compare
Atu8191 -0.5 -1.4 hypothetical protein compare
Atu2578 -0.5 -3.2 cAMP-dependent protein kinase regulatory subunit compare
Atu1103 -0.5 -1.6 rRNA-adenine N6,N6-dimethyltransferase compare
Atu2511 -0.5 -3.0 D-alanine aminotransferase compare
Atu3015 -0.5 -3.1 hypothetical protein compare
Atu2692 -0.5 -1.3 intracellular septation protein compare
Atu0501 -0.5 -3.8 acyl-CoA dehydrogenase compare
Atu0836 -0.5 -1.1 Glutathione-S-transferase compare
Atu4199 -0.5 -3.4 TetR family transcriptional regulator compare
Atu1983 -0.5 -2.2 hypothetical protein compare
Atu1739 -0.5 -2.4 permease compare
Atu0635 -0.5 -3.0 hypothetical protein compare
Atu3429 -0.5 -1.0 hypothetical protein compare
Atu1364 -0.5 -2.2 ATP-dependent Clp protease, ATP-binding subunit compare
Atu3481 -0.5 -2.1 enoyl-CoA hydratase compare
Atu1515 -0.5 -1.5 hypothetical protein compare
Atu2001 -0.5 -2.9 excinuclease ABC subunit B compare
Atu0925 -0.5 -1.4 hypothetical protein compare
Atu2657 -0.5 -1.2 hypothetical protein compare
Atu3668 -0.5 -1.4 siderophore biosynthesis protein compare
Atu2432 -0.5 -1.3 hypothetical protein compare
Atu1285 -0.5 -2.2 metal dependent hydrolase compare
Atu3755 -0.5 -1.5 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu0961 -0.5 -1.8 hypothetical protein compare
Atu3183 -0.5 -0.6 hypothetical protein compare
Atu3667 -0.5 -1.7 aspartate alpha-decarboxylase compare
Atu3018 -0.5 -2.3 hypothetical protein compare
Atu0513 -0.5 -2.2 hypothetical protein compare
Atu0604 -0.5 -1.4 hypothetical protein compare
Atu6003 -0.5 -2.7 C compare
Atu2477 -0.5 -1.8 DNA oxidation protective protein, not DNA-binding compare
Atu4454 -0.5 -2.1 RpiR family transcriptional regulator compare
Atu1634 -0.5 -0.8 hypothetical protein compare
Atu1241 -0.5 -1.2 hypothetical protein compare
Atu3483 -0.5 -1.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu1484 -0.5 -1.3 transcriptional regulator compare
Atu4890 -0.5 -1.1 IS426 transposase compare
Atu2221 -0.5 -2.2 Lipid A biosynthesis protein compare
Atu3036 -0.5 -1.9 dipeptide ABC transporter permease compare
Atu1760 -0.5 -0.8 hypothetical protein compare
Atu4617 -0.4 -3.0 dTDP-D-glucose-4,6-dehydratase compare
Atu3505 -0.4 -3.3 3-hydroxyisobutyryl-CoA hydrolase compare
Atu0726 -0.4 -2.4 ring hydroxylating dioxygenase, alpha-subunit compare
Atu0503 -0.4 -3.2 enoyl-CoA hydratase compare
Atu4875 -0.4 -2.3 hypothetical protein compare
Atu2125 -0.4 -0.5 ABC transporter, nucleotide binding/ATPase protein compare
Atu0819 -0.4 -1.6 hypothetical protein compare
Atu0976 -0.4 -0.9 cycL protein compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in stress experiments

For stress Sodium cyanide across organisms