Experiment set5IT082 for Pseudomonas simiae WCS417

Compare to:

Glycine nitrogen source

200 most important genes:

  gene name fitness t score description  
PS417_01575 -7.8 -6.4 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PS417_25720 -6.4 -9.5 anthranilate synthase component II compare
PS417_18585 -6.1 -6.0 3-isopropylmalate dehydrogenase compare
PS417_01565 -6.1 -4.9 imidazole glycerol phosphate synthase compare
PS417_02005 -5.4 -14.4 glutamate synthase compare
PS417_26740 -5.2 -12.6 homoserine acetyltransferase compare
PS417_18600 -5.2 -3.4 isopropylmalate isomerase compare
PS417_02455 -5.0 -6.2 putative transporter, required for glycine utilization (from data) conserved
PS417_22690 -5.0 -6.8 phosphogluconate dehydratase compare
PS417_01855 -4.9 -2.3 phosphoribosyl-AMP cyclohydrolase compare
PS417_27795 -4.9 -1.8 orotate phosphoribosyltransferase compare
PS417_18560 -4.9 -12.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
PS417_25725 -4.9 -18.8 anthranilate synthase component I compare
PS417_01640 -4.9 -8.7 histidine kinase compare
PS417_23810 -4.7 -12.6 acetolactate synthase 3 catalytic subunit compare
PS417_01635 -4.7 -13.8 nitrogen regulation protein NR(I) compare
PS417_23800 -4.7 -12.7 ketol-acid reductoisomerase compare
PS417_25715 -4.7 -5.5 anthranilate phosphoribosyltransferase compare
PS417_26745 -4.5 -8.8 methionine biosynthesis protein MetW compare
PS417_08125 -4.5 -2.4 prephenate dehydratase compare
PS417_22350 -4.5 -3.3 Fis family transcriptional regulator compare
PS417_04420 -4.5 -12.5 histidinol dehydrogenase compare
PS417_02000 -4.4 -15.3 glutamate synthase compare
PS417_23805 -4.4 -6.3 acetolactate synthase 3 regulatory subunit compare
PS417_04415 -4.4 -11.3 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PS417_23995 -4.3 -1.6 preprotein translocase subunit SecG compare
PS417_00185 -4.3 -6.0 tryptophan synthase subunit beta compare
PS417_01850 -4.2 -8.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PS417_18595 -4.2 -4.3 3-isopropylmalate dehydratase compare
PS417_02510 -4.1 -5.9 ATP phosphoribosyltransferase regulatory subunit compare
PS417_26890 -4.0 -8.9 dihydroxy-acid dehydratase compare
PS417_18530 -3.9 -4.5 O-succinylhomoserine sulfhydrylase compare
PS417_00180 -3.8 -4.3 tryptophan synthase subunit alpha compare
PS417_12855 -3.6 -5.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
PS417_24745 -3.6 -5.3 gamma-glutamyl phosphate reductase compare
PS417_05595 -3.5 -7.3 ornithine carbamoyltransferase compare
PS417_23110 -3.5 -7.0 2-isopropylmalate synthase compare
PS417_23545 -3.4 -4.3 gamma-glutamyl kinase compare
PS417_25710 -3.4 -2.5 indole-3-glycerol-phosphate synthase compare
PS417_27615 -3.2 -9.6 ammonia channel protein conserved
PS417_27195 -3.2 -2.3 N-acetylglutamate synthase compare
PS417_20125 -3.2 -5.7 phosphoribosylglycinamide formyltransferase compare
PS417_27305 -3.0 -9.8 5-formyltetrahydrofolate cyclo-ligase compare
PS417_12310 -3.0 -13.4 methionine synthase compare
PS417_01560 -2.9 -3.8 imidazoleglycerol-phosphate dehydratase compare
PS417_27835 -2.9 -9.2 endoribonuclease compare
PS417_20160 -2.8 -4.1 cysteine synthase compare
PS417_06200 -2.8 -8.2 protein-PII uridylyltransferase compare
PS417_22360 -2.7 -6.1 Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) (from data) conserved
PS417_28220 -2.7 -2.6 LysR family transcriptional regulator compare
PS417_22370 -2.7 -5.4 Aminomethyltransferase (EC 2.1.2.10) (from data) conserved
PS417_22355 -2.7 -5.0 glycine cleavage system protein H compare
PS417_01605 -2.6 -3.3 phosphoglycerate mutase compare
PS417_08155 -2.5 -3.6 integration host factor subunit beta compare
PS417_12290 -2.5 -12.3 sulfite reductase compare
PS417_01570 -2.5 -2.7 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase compare
PS417_27690 -2.5 -4.9 XRE family transcriptional regulator compare
PS417_08220 -2.5 -1.8 epimerase compare
PS417_16005 -2.3 -5.8 ATPase compare
PS417_01710 -2.3 -6.2 histidine utilization repressor compare
PS417_26995 -2.3 -12.4 phosphoserine phosphatase compare
PS417_21705 -2.3 -7.6 arginine N-succinyltransferase compare
PS417_02555 -2.3 -14.9 exoribonuclease R compare
PS417_24155 -2.2 -3.6 ATP-binding protein compare
PS417_26730 -2.2 -1.5 pyrroline-5-carboxylate reductase compare
PS417_27800 -2.1 -8.7 exodeoxyribonuclease III compare
PS417_01580 -1.9 -1.1 imidazole glycerol phosphate synthase compare
PS417_03925 -1.8 -5.3 nicotinate-nucleotide pyrophosphorylase compare
PS417_23900 -1.7 -7.4 poly(A) polymerase compare
PS417_07170 -1.7 -3.6 hypothetical protein compare
PS417_21700 -1.7 -3.7 arginine N-succinyltransferase compare
PS417_21475 -1.6 -3.3 HAD family hydrolase compare
PS417_22385 -1.6 -9.8 quinolinate synthase A compare
PS417_16465 -1.6 -5.6 sirohydrochlorin ferrochelatase compare
PS417_26985 -1.5 -5.4 phosphoenolpyruvate-protein phosphotransferase compare
PS417_10675 -1.5 -1.6 TetR family transcriptional regulator compare
PS417_12120 -1.3 -4.6 IclR family transcriptional regulator compare
PS417_24835 -1.3 -4.5 hypothetical protein compare
PS417_08205 -1.3 -3.5 acetyltransferase compare
PS417_20610 -1.3 -1.9 hypothetical protein compare
PS417_00755 -1.2 -1.1 biofilm PGA synthesis protein PgaD compare
PS417_21510 -1.2 -1.9 histidine kinase compare
PS417_06895 -1.2 -4.5 DNA-binding protein compare
PS417_19350 -1.2 -4.0 GTP cyclohydrolase compare
PS417_28070 -1.2 -5.8 phosphate ABC transporter ATP-binding protein compare
PS417_20985 -1.2 -2.4 porin compare
PS417_22520 -1.2 -2.7 histidine kinase compare
PS417_08225 -1.1 -4.1 acetolactate synthase compare
PS417_08195 -1.1 -5.9 hypothetical protein compare
PS417_12565 -1.1 -3.7 2-dehydro-3-deoxygluconokinase compare
PS417_07175 -1.0 -3.3 beta-lactamase compare
PS417_15465 -1.0 -3.5 carboxynorspermidine decarboxylase compare
PS417_18070 -1.0 -1.3 general secretion pathway protein GspH compare
PS417_22570 -1.0 -1.1 H-NS histone compare
PS417_28080 -1.0 -7.6 phosphate ABC transporter permease compare
PS417_07875 -1.0 -1.2 hypothetical protein compare
PS417_08250 -1.0 -2.5 competence protein ComEA compare
PS417_13490 -1.0 -2.1 hypothetical protein compare
PS417_26850 -0.9 -0.9 twin-arginine translocation pathway signal protein compare
PS417_23950 -0.9 -1.8 polynucleotide phosphorylase/polyadenylase compare
PS417_27010 -0.9 -6.7 threonine dehydratase compare
PS417_22365 -0.9 -3.3 serine dehydratase compare
PS417_15135 -0.9 -1.8 hypothetical protein compare
PS417_18690 -0.9 -2.5 aromatic amino acid aminotransferase compare
PS417_22375 -0.9 -0.9 cold-shock protein compare
PS417_08580 -0.9 -4.4 histidine kinase compare
PS417_02175 -0.9 -3.0 transcriptional regulator compare
PS417_27435 -0.9 -4.3 polyphosphate kinase compare
PS417_03905 -0.9 -2.1 fimbrial protein compare
PS417_23170 -0.9 -2.0 FeS assembly protein IscX compare
PS417_07615 -0.9 -3.9 TetR family transcriptional regulator compare
PS417_18590 -0.8 -2.0 SAM-dependent methyltransferase compare
PS417_04410 -0.8 -1.0 hypothetical protein compare
PS417_07595 -0.8 -2.4 PasA protein compare
PS417_08200 -0.8 -2.2 hypothetical protein compare
PS417_17240 -0.8 -3.1 trigger factor compare
PS417_19565 -0.8 -2.6 TetR family transcriptional regulator compare
PS417_11485 -0.8 -2.2 AraC family transcriptional regulator compare
PS417_23775 -0.8 -1.1 exodeoxyribonuclease V subunit beta compare
PS417_23770 -0.8 -1.9 exodeoxyribonuclease V subunit alpha compare
PS417_13800 -0.8 -1.7 4-deoxy-4-formamido-L-arabinose-phospho-UDP deformylase compare
PS417_00190 -0.8 -2.7 LysR family transcriptional regulator compare
PS417_15915 -0.8 -1.1 hypothetical protein compare
PS417_06645 -0.8 -4.7 RNA polymerase-associated protein RapA compare
PS417_11925 -0.7 -1.6 hypothetical protein compare
PS417_16990 -0.7 -3.6 acyl-CoA dehydrogenase compare
PS417_18445 -0.7 -3.0 glycerol-3-phosphatase compare
PS417_21125 -0.7 -2.9 phosphoadenosine phosphosulfate reductase compare
PS417_17735 -0.7 -1.6 LacI family transcriptional regulator compare
PS417_03495 -0.7 -1.8 type III secretory protein EscS compare
PS417_06165 -0.7 -2.0 thiamine biosynthesis protein ThiF compare
PS417_00900 -0.7 -1.7 4-aminobutyrate aminotransferase compare
PS417_28085 -0.7 -4.9 phosphate-binding protein compare
PS417_03920 -0.7 -2.1 dephospho-CoA kinase compare
PS417_21850 -0.7 -1.3 LysR family transcriptional regulator compare
PS417_16490 -0.7 -1.0 cell division protein FtsK compare
PS417_02805 -0.7 -1.3 urease subunit gamma compare
PS417_08380 -0.7 -3.0 ABC transporter ATP-binding protein compare
PS417_22270 -0.7 -1.6 hypothetical protein compare
PS417_08335 -0.7 -1.3 hypothetical protein compare
PS417_18195 -0.7 -2.4 3-(3-hydroxyphenyl)propionate hydroxylase compare
PS417_28390 -0.7 -2.5 CDP-alcohol phosphatidyltransferase compare
PS417_06095 -0.7 -1.6 energy transducer TonB compare
PS417_28515 -0.7 -1.5 16S rRNA methyltransferase compare
PS417_15780 -0.7 -1.7 membrane protein compare
PS417_07375 -0.7 -3.7 ribonuclease D compare
PS417_21355 -0.7 -1.0 hypothetical protein compare
PS417_05975 -0.7 -0.7 chemotaxis protein CheW compare
PS417_23830 -0.6 -4.6 hypothetical protein compare
PS417_28075 -0.6 -2.0 phosphate ABC transporter permease compare
PS417_00480 -0.6 -1.7 hypothetical protein compare
PS417_25915 -0.6 -2.4 carbon-nitrogen hydrolase compare
PS417_21690 -0.6 -2.7 N-succinylarginine dihydrolase compare
PS417_05025 -0.6 -1.6 maleylacetoacetate isomerase compare
PS417_02745 -0.6 -1.7 FMN-dependent NADH-azoreductase compare
PS417_08590 -0.6 -1.9 hypothetical protein compare
PS417_17860 -0.6 -1.9 2-oxo-hepta-3-ene-1,7-dioate hydratase compare
PS417_22060 -0.6 -0.8 hypothetical protein compare
PS417_02615 -0.6 -2.3 transglutaminase compare
PS417_01825 -0.6 -1.0 chemotaxis protein compare
PS417_20665 -0.6 -3.1 hypothetical protein compare
PS417_28340 -0.6 -1.2 hypothetical protein compare
PS417_14710 -0.6 -1.2 isochorismatase compare
PS417_21090 -0.6 -1.6 hypothetical protein compare
PS417_02360 -0.6 -1.3 nitrate reductase compare
PS417_05695 -0.6 -3.0 transcriptional regulator compare
PS417_11520 -0.6 -1.3 Sorbitol dehydrogenase (EC 1.1.1.14) (from data) compare
PS417_04385 -0.6 -3.6 organic solvent ABC transporter substrate-binding protein compare
PS417_09330 -0.6 -2.3 NAD(P)H-quinone oxidoreductase compare
PS417_18420 -0.6 -1.4 deoxyribonuclease compare
PS417_21000 -0.6 -1.7 CrfX protein compare
PS417_12595 -0.6 -1.4 transcriptional regulator compare
PS417_15585 -0.6 -2.3 DNA repair nucleotidyltransferase compare
PS417_05570 -0.6 -2.7 DeoR faimly transcriptional regulator compare
PS417_14590 -0.6 -1.2 LysR family transcriptional regulator compare
PS417_08230 -0.6 -1.0 lipopolysaccharide biosynthesis protein RfbH compare
PS417_07565 -0.6 -1.1 hypothetical protein compare
PS417_24535 -0.6 -1.9 membrane protein compare
PS417_07420 -0.6 -1.5 restriction endonuclease compare
PS417_27110 -0.6 -2.0 spermidine/putrescine ABC transporter permease compare
PS417_17795 -0.6 -1.1 ABC transporter permease compare
PS417_13620 -0.6 -1.4 thermostable hemolysin compare
PS417_19705 -0.6 -1.6 flagellar biosynthesis regulator FlhF compare
PS417_11570 -0.5 -1.9 ABC transporter permease compare
PS417_13730 -0.5 -1.7 hypothetical protein compare
PS417_13965 -0.5 -1.6 acetoin utilization protein compare
PS417_06350 -0.5 -3.7 stationary phase survival protein SurE compare
PS417_10185 -0.5 -1.5 hypothetical protein compare
PS417_05155 -0.5 -1.0 DNA polymerase III subunit chi compare
PS417_21210 -0.5 -1.2 amidotransferase compare
PS417_15275 -0.5 -3.4 type VI secretion protein compare
PS417_17440 -0.5 -1.1 beta-lactamase compare
PS417_02460 -0.5 -2.7 epoxyqueuosine reductase compare
PS417_21595 -0.5 -1.2 flagellar biosynthesis protein FlgN compare
PS417_16555 -0.5 -1.0 cupin compare
PS417_10815 -0.5 -2.1 TetR family transcriptional regulator compare
PS417_21430 -0.5 -1.3 3-oxoacyl-ACP synthase compare
PS417_01130 -0.5 -1.8 L-glyceraldehyde 3-phosphate reductase compare
PS417_01995 -0.5 -0.7 hypothetical protein compare
PS417_11930 -0.5 -3.4 hypothetical protein compare


Specific Phenotypes

For 18 genes in this experiment

For nitrogen source Glycine in Pseudomonas simiae WCS417

For nitrogen source Glycine across organisms