Experiment set5IT082 for Pseudomonas simiae WCS417

Compare to:

Glycine nitrogen source

200 most detrimental genes:

  gene name fitness t score description  
PS417_26510 +4.3 31.8 5,10-methylenetetrahydrofolate reductase compare
PS417_02910 +3.1 14.2 precorrin-2 C20-methyltransferase compare
PS417_02895 +3.1 10.8 precorrin-6Y C5,15-methyltransferase compare
PS417_20020 +3.1 23.0 cobalamin synthase compare
PS417_11405 +3.0 8.4 precorrin 6A synthase compare
PS417_20035 +3.0 25.8 adenosylcobinamide kinase compare
PS417_12345 +2.9 20.7 cobalamin biosynthesis protein CobW compare
PS417_20040 +2.9 14.9 cobyric acid synthase compare
PS417_12355 +2.9 6.5 magnesium chelatase compare
PS417_20050 +2.9 21.3 cobalamin biosynthesis protein CobD compare
PS417_20025 +2.8 7.1 alpha-ribazole phosphatase compare
PS417_12350 +2.8 21.7 cobalamin biosynthesis protein CobN compare
PS417_20030 +2.7 10.2 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
PS417_20060 +2.7 15.9 cobyrinic acid a,c-diamide synthase compare
PS417_12325 +2.7 19.3 precorrin-4 C11-methyltransferase compare
PS417_02915 +2.6 13.6 precorrin-3B C17-methyltransferase compare
PS417_02890 +2.6 10.1 cobalt-precorrin-6X reductase compare
PS417_20045 +2.5 10.7 threonine-phosphate decarboxylase compare
PS417_13140 +1.6 3.7 oxidoreductase compare
PS417_14065 +1.3 5.3 UTP--glucose-1-phosphate uridylyltransferase compare
PS417_01290 +1.1 2.4 ADP-ribose diphosphatase compare
PS417_26240 +1.0 3.2 N-methylproline demethylase compare
PS417_14080 +1.0 3.2 hypothetical protein compare
PS417_19065 +1.0 1.5 monooxygenase compare
PS417_27585 +1.0 3.3 diaminopimelate epimerase compare
PS417_10720 +0.9 5.4 chemotaxis protein CheY compare
PS417_08185 +0.9 5.4 glycosyl transferase compare
PS417_02160 +0.9 1.7 hypothetical protein compare
PS417_07560 +0.9 1.9 universal stress protein UspA compare
PS417_02485 +0.9 4.9 tRNA delta(2)-isopentenylpyrophosphate transferase compare
PS417_01280 +0.9 2.0 peptidoglycan-binding protein LysM compare
PS417_11950 +0.9 1.8 hypothetical protein compare
PS417_20650 +0.9 5.2 hypothetical protein compare
PS417_17980 +0.8 2.7 ABC transporter permease compare
PS417_19885 +0.8 2.1 flagellar basal body rod protein FlgG compare
PS417_11770 +0.8 1.9 pyruvate dehydrogenase compare
PS417_26335 +0.7 2.3 BetI family transcriptional regulator compare
PS417_22175 +0.7 1.6 amino acid transporter LysE compare
PS417_00385 +0.7 1.3 Fur family transcriptional regulator compare
PS417_18360 +0.7 2.9 hypothetical protein compare
PS417_09930 +0.7 2.0 hypothetical protein compare
PS417_12335 +0.7 2.7 cobalt transporter compare
PS417_24615 +0.7 1.1 hypothetical protein compare
PS417_01795 +0.7 4.8 glucosyltransferase MdoH compare
PS417_23385 +0.7 5.3 cytochrome o ubiquinol oxidase subunit I compare
PS417_09470 +0.7 1.2 hypothetical protein compare
PS417_03380 +0.7 0.9 hypothetical protein compare
PS417_27810 +0.7 4.4 ribonuclease PH compare
PS417_14240 +0.7 2.8 isochorismatase compare
PS417_02370 +0.7 1.6 ADP-ribose pyrophosphatase compare
PS417_26220 +0.7 1.7 Rieske (2Fe-2S) protein compare
PS417_18095 +0.7 2.9 iron-dicitrate transporter subunit FecD compare
PS417_18265 +0.7 1.7 AsnC family transcriptional regulator compare
PS417_27940 +0.7 2.1 type VI secretion protein compare
PS417_19790 +0.7 2.0 ATP synthase compare
PS417_24085 +0.7 1.1 protein RnfH compare
PS417_23380 +0.7 2.6 cytochrome o ubiquinol oxidase subunit III compare
PS417_23725 +0.7 2.8 methylmalonate-semialdehyde dehydrogenase compare
PS417_16370 +0.7 4.7 chemotaxis protein CheY compare
PS417_06680 +0.7 4.8 nuclease PIN compare
PS417_00045 +0.6 2.2 glycerol acyltransferase compare
PS417_26270 +0.6 1.7 AraC family transcriptional regulator compare
PS417_26120 +0.6 1.4 hypothetical protein compare
PS417_23370 +0.6 3.0 protoheme IX farnesyltransferase compare
PS417_02670 +0.6 1.7 ABC transporter compare
PS417_27300 +0.6 0.9 cell division protein ZapA compare
PS417_20520 +0.6 1.4 3-phosphoglycerate kinase compare
PS417_07870 +0.6 1.1 hypothetical protein compare
PS417_16775 +0.6 1.5 branched-chain amino acid ABC transporter ATP-binding protein compare
PS417_05500 +0.6 2.3 2,3-diketo-5-methylthio-1-phosphopentane phosphatase compare
PS417_03550 +0.6 1.5 hypothetical protein compare
PS417_19560 +0.6 3.8 amino acid ABC transporter substrate-binding protein compare
PS417_13580 +0.6 1.2 AraC family transcriptional regulator compare
PS417_23390 +0.6 3.2 ubiquinol oxidase subunit II compare
PS417_01410 +0.6 4.2 transporter compare
PS417_09035 +0.6 2.3 hypothetical protein compare
PS417_09235 +0.6 0.8 molecular chaperone compare
PS417_08090 +0.6 0.9 3-oxoacyl-ACP reductase compare
PS417_04900 +0.6 3.9 amino acid ABC transporter substrate-binding protein compare
PS417_26685 +0.6 1.1 hypothetical protein compare
PS417_17615 +0.6 2.5 leucyl-tRNA synthetase compare
PS417_15480 +0.6 1.0 ABC transporter substrate-binding protein compare
PS417_01490 +0.6 1.5 ABC transporter permease compare
PS417_10855 +0.6 3.0 chemotaxis protein CheY compare
PS417_27710 +0.6 3.4 AsnC family transcriptional regulator compare
PS417_24895 +0.6 1.0 hypothetical protein compare
PS417_19825 +0.6 4.2 ATPase AAA compare
PS417_01375 +0.6 2.0 hypothetical protein compare
PS417_01790 +0.5 3.9 glucan biosynthesis protein G compare
PS417_14810 +0.5 1.7 Fosmidomycin resistance protein compare
PS417_00405 +0.5 3.4 DNA polymerase I compare
PS417_02665 +0.5 4.3 branched-chain amino acid ABC transporter permease compare
PS417_11440 +0.5 0.9 hypothetical protein compare
PS417_00550 +0.5 1.0 hypothetical protein compare
PS417_19930 +0.5 2.5 DNA methyltransferase compare
PS417_02440 +0.5 1.9 flagellar motor protein MotB compare
PS417_01965 +0.5 1.0 fimbriae biosynthesis protein compare
PS417_18865 +0.5 2.5 hypothetical protein compare
PS417_04960 +0.5 1.3 hypothetical protein compare
PS417_14070 +0.5 0.5 hypothetical protein compare
PS417_16510 +0.5 2.0 Clp protease ClpX compare
PS417_22410 +0.5 3.0 hypothetical protein compare
PS417_19620 +0.5 1.3 hypothetical protein compare
PS417_07860 +0.5 2.2 hypothetical protein compare
PS417_02255 +0.5 1.8 lipopolysaccharide kinase compare
PS417_25985 +0.5 1.6 dethiobiotin synthetase compare
PS417_26900 +0.5 1.2 L-cystine transporter tcyP compare
PS417_01425 +0.5 2.5 AraC family transcriptional regulator compare
PS417_05445 +0.5 1.0 DNA mismatch repair protein MutT compare
PS417_13010 +0.5 0.8 alpha/beta hydrolase compare
PS417_15435 +0.5 1.8 metallophosphatase compare
PS417_12870 +0.5 1.3 enoyl-CoA hydratase compare
PS417_26050 +0.5 2.0 response regulator compare
PS417_10015 +0.5 1.0 hypothetical protein compare
PS417_15650 +0.5 0.7 glutamine amidotransferase compare
PS417_09585 +0.5 3.2 acetyltransferase compare
PS417_11375 +0.5 1.1 hypothetical protein compare
PS417_27425 +0.5 3.4 exopolyphosphatase compare
PS417_24885 +0.5 2.3 transcriptional regulator compare
PS417_15695 +0.5 3.0 molybdenum cofactor biosynthesis protein A compare
PS417_27705 +0.5 1.2 amino acid dehydrogenase compare
PS417_01305 +0.5 1.9 Fis family transcriptional regulator compare
PS417_08540 +0.5 2.0 RNA helicase compare
PS417_18460 +0.5 1.4 transcriptional regulator compare
PS417_11445 +0.5 2.4 enoyl-CoA hydratase compare
PS417_19735 +0.5 1.3 flagellar biosynthesis protein FliQ compare
PS417_27040 +0.5 1.8 3-phosphoglycerate dehydrogenase compare
PS417_19695 +0.5 3.0 flagellar biosynthesis sigma factor compare
PS417_04535 +0.5 1.1 lysine transporter LysE compare
PS417_01420 +0.5 3.4 histidine kinase compare
PS417_13240 +0.5 1.8 siderophore biosynthesis protein compare
PS417_11450 +0.5 2.0 AraC family transcriptional regulator compare
PS417_16720 +0.5 0.7 membrane protein compare
PS417_21380 +0.5 1.9 GntR family transcriptional regulator compare
PS417_03460 +0.5 1.9 type III secretion protein HrpI compare
PS417_08190 +0.5 3.8 membrane protein compare
PS417_01045 +0.5 1.2 RND transporter compare
PS417_25145 +0.5 2.0 hypothetical protein compare
PS417_09635 +0.5 2.6 mannose-1-phosphate guanylyltransferase compare
PS417_13290 +0.5 1.6 AraC family transcriptional regulator compare
PS417_15770 +0.5 0.9 pyridoxine 5'-phosphate oxidase compare
PS417_23855 +0.5 1.2 ABC transporter substrate-binding protein compare
PS417_22990 +0.5 1.0 iron dicitrate transport regulator FecR compare
PS417_07195 +0.5 1.2 hypothetical protein compare
PS417_26990 +0.5 1.1 RNA pyrophosphohydrolase compare
PS417_04965 +0.5 1.5 hypothetical protein compare
PS417_23505 +0.5 1.8 cell division protein DedD compare
PS417_00865 +0.5 1.6 hypothetical protein compare
PS417_23375 +0.5 1.0 cytochrome C oxidase compare
PS417_08365 +0.5 0.7 hypothetical protein compare
PS417_14935 +0.5 1.3 transposase compare
PS417_18940 +0.5 1.7 LysR family transcriptional regulator compare
PS417_18705 +0.5 1.3 succinate dehydrogenase compare
PS417_19975 +0.4 1.3 hypothetical protein compare
PS417_17470 +0.4 2.3 LuxR family transcriptional regulator compare
PS417_11875 +0.4 2.1 Inositol 2-dehydrogenase (EC 1.1.1.18) (from data) compare
PS417_16645 +0.4 1.0 XRE family transcriptional regulator compare
PS417_17305 +0.4 0.8 hypothetical protein compare
PS417_14315 +0.4 1.3 2,5-dioxovalerate dehydrogenase compare
PS417_01390 +0.4 3.0 PbsX family transcriptional regulator compare
PS417_01115 +0.4 0.8 serine acetyltransferase compare
PS417_25675 +0.4 1.6 membrane protein compare
PS417_21680 +0.4 1.4 succinylglutamate desuccinylase compare
PS417_07865 +0.4 0.8 hypothetical protein compare
PS417_12090 +0.4 1.3 hypothetical protein compare
PS417_02340 +0.4 1.3 LysR family transcriptional regulator compare
PS417_10240 +0.4 1.6 hypothetical protein compare
PS417_06025 +0.4 1.4 alpha/beta hydrolase compare
PS417_10540 +0.4 2.4 NAD-dependent deacetylase compare
PS417_03325 +0.4 1.3 acid phosphatase compare
PS417_01415 +0.4 3.0 glycosyl transferase family 1 compare
PS417_25645 +0.4 2.4 peptidase M23 compare
PS417_10825 +0.4 1.2 glycine/betaine ABC transporter substrate-binding protein compare
PS417_10710 +0.4 1.7 GNAT family acetyltransferase compare
PS417_15610 +0.4 1.7 GDP-mannose pyrophosphatase compare
PS417_03360 +0.4 2.5 histidine kinase compare
PS417_16885 +0.4 1.3 hypothetical protein compare
PS417_07015 +0.4 1.3 helicase compare
PS417_27210 +0.4 1.0 AsnC family transcriptional regulator compare
PS417_06945 +0.4 0.8 membrane protein compare
PS417_15640 +0.4 1.6 DNA methylase compare
PS417_25905 +0.4 1.9 AsnC family transcriptional regulator compare
PS417_28185 +0.4 1.2 homocysteine methyltransferase compare
PS417_27475 +0.4 1.4 membrane protein compare
PS417_17590 +0.4 0.9 ABC transporter substrate-binding protein compare
PS417_21535 +0.4 1.9 chemotaxis protein CheY compare
PS417_24115 +0.4 1.4 hypothetical protein compare
PS417_03025 +0.4 2.4 penicillin-binding protein 1C compare
PS417_08420 +0.4 1.9 lipoprotein compare
PS417_22115 +0.4 1.2 transcriptional regulator compare
PS417_03465 +0.4 1.1 type III secretion protein compare
PS417_04910 +0.4 2.5 amino acid ABC transporter permease compare
PS417_27245 +0.4 1.9 aminotransferase DegT compare
PS417_16045 +0.4 1.5 acyl-CoA dehydrogenase compare
PS417_21830 +0.4 2.3 TetR family transcriptional regulator compare
PS417_01405 +0.4 1.4 sugar transporter compare
PS417_25290 +0.4 1.0 hypothetical protein compare
PS417_04920 +0.4 1.5 GntR family transcriptional regulator compare
PS417_13650 +0.4 1.3 LacI family transcriptional regulator compare
PS417_13305 +0.4 0.8 hypothetical protein compare


Specific Phenotypes

For 18 genes in this experiment

For nitrogen source Glycine in Pseudomonas simiae WCS417

For nitrogen source Glycine across organisms