Experiment set5IT082 for Pseudomonas putida KT2440

Compare to:

Levulinic Acid carbon source

200 most important genes:

  gene name fitness t score description  
PP_2794 -6.5 -4.4 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_3754 -6.0 -7.1 Beta-ketothiolase BktB compare
PP_2791 -5.9 -7.0 4-hydroxypentanoyl-CoA kinase, subunit LvaA (from data) compare
PP_2793 -5.3 -3.6 Acyl-CoA dehydrogenase family protein compare
PP_2333 -5.1 -7.0 GntR family transcriptional regulator compare
PP_2371 -5.1 -7.7 Sulphite reductase hemoprotein, beta subunit compare
PP_4799 -5.1 -4.9 putative Muramoyltetrapeptide carboxypeptidase compare
PP_0184 -5.1 -11.3 Argininosuccinate lyase compare
PP_4678 -5.0 -16.7 Ketol-acid reductoisomerase compare
PP_1995 -5.0 -11.1 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_4909 -5.0 -10.1 phosphoserine phosphatase compare
PP_0966 -4.9 -12.9 Histidinol dehydrogenase compare
PP_3753 -4.9 -6.9 Transcriptional regulator, AraC family compare
PP_0422 -4.8 -7.9 Indole-3-glycerol phosphate synthase compare
PP_0967 -4.8 -13.7 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_2336 -4.7 -6.4 aconitate hydratase 1 compare
PP_5014 -4.7 -5.5 Phosphoribosyl-AMP cyclohydrolase compare
PP_5097 -4.7 -16.7 homoserine O-acetyltransferase compare
PP_5347 -4.6 -13.3 pyruvate carboxylase subunit A compare
PP_5098 -4.6 -10.2 methionine biosynthesis protein MetW compare
PP_5289 -4.6 -6.1 Acetylglutamate kinase compare
PP_5185 -4.5 -10.5 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4126 -4.5 -3.1 NADH-quinone oxidoreductase subunit I compare
PP_0420 -4.5 -14.1 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_2335 -4.5 -11.2 methylcitrate synthase compare
PP_2327 -4.5 -9.4 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_1986 -4.5 -4.3 3-isopropylmalate dehydratase small subunit compare
PP_0290 -4.5 -11.5 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4680 -4.4 -15.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2334 -4.4 -9.3 2-methylisocitrate lyase compare
PP_1088 -4.4 -17.0 Argininosuccinate synthase compare
PP_0082 -4.4 -8.8 tryptophan synthase alpha chain compare
PP_0691 -4.4 -7.7 Glutamate 5-kinase compare
PP_1985 -4.3 -7.7 3-isopropylmalate dehydratase large subunit compare
PP_0083 -4.3 -11.0 tryptophan synthase beta chain compare
PP_5346 -4.3 -11.9 pyruvate carboxylase subunit B compare
PP_4699 -4.2 -7.5 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
PP_2001 -4.2 -13.0 O-succinylhomoserine sulfhydrylase compare
PP_0289 -4.2 -9.7 Imidazoleglycerol-phosphate dehydratase compare
PP_5015 -4.2 -5.8 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0292 -4.1 -4.8 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_0965 -4.1 -8.9 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_3511 -4.1 -10.7 Branched-chain-amino-acid aminotransferase compare
PP_4700 -4.1 -6.1 pantothenate synthetase compare
PP_4121 -4.0 -8.1 NADH-quinone oxidoreductase subunit C/D compare
PP_3999 -4.0 -10.2 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4120 -4.0 -6.6 NADH-quinone oxidoreductase subunit B compare
PP_4999 -4.0 -2.7 dihydroorotase-like protein compare
PP_1988 -3.9 -11.7 3-isopropylmalate dehydrogenase compare
PP_0417 -3.9 -17.9 Anthranilate synthase component 1 compare
PP_4890 -3.9 -6.8 ATP phosphoribosyltransferase regulatory subunit compare
PP_0421 -3.8 -7.9 Anthranilate phosphoribosyltransferase compare
PP_0833 -3.8 -3.7 queuine tRNA-ribosyltransferase compare
PP_3286 -3.8 -9.3 DNA-binding transcriptional repressor PaaX(phenylacetyl-CoA) compare
PP_5348 -3.8 -9.8 Transcriptional regulator, LysR family compare
PP_3121 -3.8 -5.9 transcriptional regulator, LysR family compare
PP_1025 -3.8 -13.4 2-isopropylmalate synthase compare
PP_4131 -3.8 -9.3 NADH-quinone oxidoreductase subunit N compare
PP_2337 -3.7 -5.6 aconitate isomerase compare
PP_4723 -3.7 -9.6 Carbamoyl-phosphate synthase large chain compare
PP_4124 -3.7 -7.8 NADH-quinone oxidoreductase subunit G compare
PP_1079 -3.6 -7.4 Ornithine carbamoyltransferase compare
PP_4902 -3.6 -4.8 Oligoribonuclease compare
PP_4628 -3.6 -4.5 conserved protein of unknown function compare
PP_2790 -3.5 -8.7 Sigma-54 dependent sensory box protein compare
PP_5128 -3.5 -7.7 Dihydroxy-acid dehydratase compare
PP_1654 -3.4 -5.1 cysteine synthase B compare
PP_4696 -3.4 -7.4 Nitrogen regulation protein NR(I) compare
PP_4724 -3.4 -5.1 Carbamoyl-phosphate synthase small chain compare
PP_4679 -3.3 -9.2 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_2168 -3.3 -12.9 Transaldolase compare
PP_0293 -3.3 -4.0 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4130 -3.2 -7.5 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_2433 -3.2 -4.8 conserved protein of unknown function compare
PP_4122 -3.2 -3.1 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_2302 -3.2 -9.6 DNA-binding, ATP-dependent protease compare
PP_1695 -3.1 -11.9 putative Sodium-solute symporter/sensory box histidine kinase/response regulator compare
PP_3662 -3.1 -10.0 conserved protein of unknown function compare
PP_4693 -3.0 -7.5 RNA polymerase-binding transcription factor DksA compare
PP_5303 -2.9 -6.2 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_3123 -2.7 -9.7 acetoacetyl CoA-transferase (subunit B) compare
PP_4129 -2.7 -6.7 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_4895 -2.6 -5.7 tRNA dimethylallyltransferase compare
PP_0339 -2.6 -4.5 Pyruvate dehydrogenase E1 component compare
PP_5095 -2.5 -2.4 pyrroline-5-carboxylate reductase compare
PP_2370 -2.5 -3.8 conserved protein of unknown function compare
PP_5155 -2.4 -2.8 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_1291 -2.4 -11.4 PhoH family protein compare
PP_2328 -2.3 -6.8 Phosphoadenosine phosphosulfate reductase compare
PP_3755 -2.3 -8.3 3-hydroxybutyryl-CoA dehydrogenase compare
PP_1075 -2.2 -12.9 glycerol kinase compare
PP_1656 -2.1 -4.3 ATP:GTP 3'-pyrophosphotransferase compare
PP_1589 -2.1 -9.3 uridylyltransferase compare
PP_4515 -2.1 -6.5 Transcriptional regulator, MarR family compare
PP_1635 -2.1 -4.2 DNA-binding response regulator compare
PP_0760 -2.1 -3.8 conserved membrane protein of unknown function compare
PP_5225 -2.0 -2.5 frataxin compare
PP_2000 -2.0 -3.3 amidophosphoribosyl transferase compare
PP_1237 -2.0 -4.2 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_4009 -2.0 -6.1 ATP-dependent Clp protease adapter protein ClpS compare
PP_3649 -2.0 -6.0 Transcriptional regulator, GntR family compare
PP_2378 -1.9 -4.0 Fe/S biogenesis protein NfuA compare
PP_3925 -1.9 -11.3 conserved protein of unknown function compare
PP_3122 -1.9 -5.7 acetoacetyl CoA-transferase (subunit A) compare
PP_5327 -1.9 -5.9 putative phosphate ABC transporter, permease subunit compare
PP_0547 -1.9 -6.3 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase compare
PP_0846 -1.8 -2.5 DnaK-like molecular chaperone specific for IscU compare
PP_5058 -1.8 -6.5 Carboxy-terminal-processing protease compare
PP_4058 -1.8 -11.2 1,4-alpha-glucan branching enzyme compare
PP_0949 -1.8 -7.5 putative ATP-binding protein UPF0042 compare
PP_5232 -1.7 -3.5 conserved protein of unknown function compare
PP_2217 -1.7 -4.7 enoyl-CoA hydratase compare
PP_1268 -1.7 -2.8 putative HtrA suppressor protein sohA compare
PP_5329 -1.7 -4.5 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_1763 -1.7 -4.6 putative oxidoreductase compare
PP_1076 -1.7 -8.0 aquaglyceroporin compare
PP_1198 -1.7 -3.8 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_4880 -1.7 -10.1 exoribonuclease R compare
PP_4993 -1.6 -6.7 Glutathione synthetase compare
PP_4008 -1.6 -7.5 ATP-dependent serine protease compare
PP_0719 -1.6 -3.4 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_0832 -1.6 -4.5 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_3946 -1.6 -2.9 HTH-type transcriptional repressor NicR compare
PP_0291 -1.6 -1.8 conserved protein of unknown function compare
PP_4342 -1.5 -4.8 flagellar synthesis regulator, putative ATPase compare
PP_0848 -1.5 -4.2 donor of Fe2+ and regulator of cysteine desulfurase activity compare
PP_3726 -1.5 -2.2 Enoyl-CoA hydratase/isomerase family protein compare
PP_4481 -1.5 -6.7 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_5146 -1.5 -6.5 RNA pyrophosphohydrolase compare
PP_3539 -1.5 -4.5 putative Transcriptional regulator compare
PP_0725 -1.5 -6.4 conserved hypothetical TPR repeat protein compare
PP_5294 -1.4 -6.6 Ribonuclease PH compare
PP_3248 -1.4 -3.4 Dyp-type peroxidase family protein compare
PP_5114 -1.4 -3.8 putative adenine methyltransferase compare
PP_1664 -1.4 -4.0 phosphoribosylglycinamide formyltransferase 1 compare
PP_1764 -1.4 -3.7 Phosphoglycolate phosphatase 2 compare
PP_4204 -1.4 -3.4 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_1994 -1.4 -2.8 tRNA pseudouridine (38-40)synthase compare
PP_0888 -1.4 -2.2 Photosynthetic apparatus regulatory protein RegA compare
PP_1860 -1.4 -4.1 Organic hydroperoxide resistance transcriptional regulator compare
PP_5350 -1.4 -5.0 Transcriptional regulator, RpiR family compare
PP_1208 -1.3 -4.0 conserved protein of unknown function, SlyX family compare
PP_4642 -1.3 -1.4 Cyclic diguanosine monophosphate-binding protein compare
PP_1262 -1.3 -7.9 LysR family transcriptional regulator compare
PP_2163 -1.3 -6.9 VacJ lipoprotein compare
PP_4532 -1.3 -2.4 ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis compare
PP_1766 -1.2 -4.1 methylthioribose-1-phosphate isomerase compare
PP_0787 -1.2 -2.0 quinolinate phosphoribosyltransferase (decarboxylating) monomer compare
PP_4098 -1.2 -2.5 UvrABC system protein C compare
PP_1231 -1.2 -4.4 quinolinate synthase [4Fe-4S] cluster subunit compare
PP_0406 -1.2 -3.7 Nucleotidyltransferase family protein compare
PP_2375 -1.2 -9.2 cobalamin-dependent methionine synthase compare
PP_4695 -1.2 -6.4 Sensory box histidine kinase compare
PP_0961 -1.2 -6.7 toluene tolerance protein compare
PP_0368 -1.2 -6.5 putative Acyl-CoA dehydrogenase compare
PP_0914 -1.2 -6.0 GGDEF domain protein compare
PP_1326 -1.2 -2.8 16S rRNA 2'-O-ribose C1402 methyltransferase compare
PP_2581 -1.2 -1.9 conserved protein of unknown function compare
PP_0127 -1.2 -3.0 Thiol:disulfide interchange protein compare
PP_3926 -1.2 -1.6 short-chain dehydrogenase compare
PP_1826 -1.1 -2.2 Hydrolase, isochorismatase family compare
PP_0960 -1.1 -4.9 phospholipid ABC transporter binding protein compare
PP_5149 -1.1 -7.3 threonine deaminase compare
PP_0484 -1.1 -4.3 transporter of an unknown substrate compare
PP_3833 -1.1 -3.8 Response regulator compare
PP_5528 -1.1 -2.4 conserved protein of unknown function compare
PP_1216 -1.1 -2.7 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_1362 -1.1 -4.9 pyruvate kinase II compare
PP_5161 -1.1 -4.9 putative lysophospholipase compare
PP_1304 -1.1 -5.7 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_3603 -1.1 -4.4 Transcriptional regulator, GntR family compare
PP_5093 -1.1 -1.5 twitching motility protein compare
PP_3840 -1.1 -1.8 conserved protein of unknown function compare
PP_5331 -1.1 -1.7 Long-chain acyl-CoA thioester hydrolase compare
PP_0872 -1.1 -4.6 Peptide chain release factor 3 compare
PP_2356 -1.1 -6.2 putative Phytochrome family protein compare
PP_4814 -1.0 -2.6 ATP-dependent protease La domain protein compare
PP_0119 -1.0 -4.1 putative zinc uptake regulation protein ZUR compare
PP_5084 -1.0 -7.4 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_4964 -1.0 -2.8 D-erythrose 4-phosphate dehydrogenase compare
PP_0959 -1.0 -1.3 phospholipid ABC transporter compare
PP_4977 -1.0 -6.0 5,10-methylenetetrahydrofolate reductase compare
PP_0958 -1.0 -4.1 phospholipid ABC transporter ATP-binding subunit compare
PP_5328 -1.0 -2.3 putative phosphate transport system permease protein compare
PP_3449 -1.0 -2.7 conserved exported protein of unknown function compare
PP_1719 -1.0 -6.1 Tail-specific protease prc compare
PP_4471 -1.0 -3.1 Magnesium transporter compare
PP_5145 -1.0 -7.3 phosphoenolpyruvate-dependent regulator (with NPR and NTR proteins) compare
PP_0856 -1.0 -4.5 conserved lipoprotein of unknown function compare
PP_3409 -1.0 -3.1 putative Cobalamin biosynthesis protein cobE compare
PP_4824 -1.0 -5.1 Sensor histidine kinase/response regulator compare
PP_0401 -1.0 -3.4 Ribosomal RNA small subunit methyltransferase A compare
PP_0393 -1.0 -2.6 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_5001 -1.0 -3.1 protease HslVU, ATPase component compare
PP_4247 -1.0 -1.5 Exonuclease compare
PP_1906 -0.9 -3.9 ribosomal large subunit pseudouridine synthase C compare
PP_1021 -0.9 -3.7 DNA-binding transcriptional regulator compare
PP_4787 -0.9 -1.9 putative protein with nucleoside triphosphate hydrolase domain compare
PP_1468 -0.9 -2.4 Tyrosine recombinase XerD compare
PP_1632 -0.9 -1.9 conserved protein of unknown function compare


Specific Phenotypes

For 17 genes in this experiment

For carbon source Levulinic Acid in Pseudomonas putida KT2440

For carbon source Levulinic Acid across organisms