Experiment set5IT076 for Pseudomonas putida KT2440

Compare to:

D-Glucose carbon source

200 most important genes:

  gene name fitness t score description  
PP_0293 -7.1 -4.9 Imidazole glycerol phosphate synthase subunit HisF compare
PP_4678 -6.1 -13.0 Ketol-acid reductoisomerase compare
PP_5185 -6.0 -8.2 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_0422 -6.0 -7.1 Indole-3-glycerol phosphate synthase compare
PP_1995 -5.9 -9.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_1988 -5.8 -9.7 3-isopropylmalate dehydrogenase compare
PP_0082 -5.8 -5.6 tryptophan synthase alpha chain compare
PP_0290 -5.8 -10.4 Imidazole glycerol phosphate synthase subunit HisH compare
PP_4909 -5.6 -8.6 phosphoserine phosphatase compare
PP_4799 -5.5 -3.8 putative Muramoyltetrapeptide carboxypeptidase compare
PP_0966 -5.5 -12.2 Histidinol dehydrogenase compare
PP_0967 -5.4 -11.5 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_0289 -5.4 -10.9 Imidazoleglycerol-phosphate dehydratase compare
PP_1985 -5.4 -7.3 3-isopropylmalate dehydratase large subunit compare
PP_0083 -5.2 -8.7 tryptophan synthase beta chain compare
PP_0417 -5.2 -20.9 Anthranilate synthase component 1 compare
PP_0420 -5.2 -13.3 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_0184 -5.1 -11.4 Argininosuccinate lyase compare
PP_1088 -5.1 -16.6 Argininosuccinate synthase compare
PP_1079 -5.1 -8.4 Ornithine carbamoyltransferase compare
PP_2168 -5.0 -14.1 Transaldolase compare
PP_5289 -5.0 -7.6 Acetylglutamate kinase compare
PP_3511 -5.0 -11.1 Branched-chain-amino-acid aminotransferase compare
PP_5014 -5.0 -5.9 Phosphoribosyl-AMP cyclohydrolase compare
PP_4680 -4.9 -16.3 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_5015 -4.9 -6.4 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_0421 -4.7 -9.6 Anthranilate phosphoribosyltransferase compare
PP_0691 -4.6 -7.6 Glutamate 5-kinase compare
PP_2371 -4.6 -9.7 Sulphite reductase hemoprotein, beta subunit compare
PP_0292 -4.6 -5.1 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_5097 -4.5 -16.0 homoserine O-acetyltransferase compare
PP_5098 -4.5 -10.8 methionine biosynthesis protein MetW compare
PP_4723 -4.4 -7.4 Carbamoyl-phosphate synthase large chain compare
PP_4679 -4.4 -8.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0965 -4.3 -11.8 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_3999 -4.3 -9.1 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_4724 -4.3 -4.1 Carbamoyl-phosphate synthase small chain compare
PP_1025 -4.2 -13.8 2-isopropylmalate synthase compare
PP_2001 -4.1 -11.6 O-succinylhomoserine sulfhydrylase compare
PP_4999 -4.0 -2.8 dihydroorotase-like protein compare
PP_4890 -3.9 -6.4 ATP phosphoribosyltransferase regulatory subunit compare
PP_5128 -3.9 -8.8 Dihydroxy-acid dehydratase compare
PP_4700 -3.8 -6.3 pantothenate synthetase compare
PP_5347 -3.8 -14.9 pyruvate carboxylase subunit A compare
PP_4696 -3.7 -8.5 Nitrogen regulation protein NR(I) compare
PP_5346 -3.5 -11.8 pyruvate carboxylase subunit B compare
PP_1022 -3.4 -9.9 glucose 6-phosphate-1-dehydrogenase compare
PP_0760 -3.4 -4.4 conserved membrane protein of unknown function compare
PP_4693 -3.4 -8.7 RNA polymerase-binding transcription factor DksA compare
PP_5155 -3.3 -4.2 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_5303 -3.3 -8.4 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_0339 -3.2 -3.7 Pyruvate dehydrogenase E1 component compare
PP_2327 -3.1 -8.7 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_5348 -3.1 -9.7 Transcriptional regulator, LysR family compare
PP_1664 -2.9 -6.4 phosphoribosylglycinamide formyltransferase 1 compare
PP_1986 -2.8 -4.5 3-isopropylmalate dehydratase small subunit compare
PP_1110 -2.8 -2.3 serine acetyltransferase compare
PP_5095 -2.8 -2.1 pyrroline-5-carboxylate reductase compare
PP_2328 -2.7 -7.7 Phosphoadenosine phosphosulfate reductase compare
PP_1109 -2.6 -10.3 Transcriptional regulator, GntR family compare
PP_1656 -2.5 -6.7 ATP:GTP 3'-pyrophosphotransferase compare
PP_1912 -2.4 -7.2 Phosphate acyltransferase compare
PP_1898 -2.3 -3.9 MotA/TolQ/ExbB proton channel family protein compare
PP_1111 -2.3 -5.2 putative Synthetase compare
PP_3790 -2.3 -10.3 diaminopimelate epimerase compare
PP_1362 -2.2 -5.8 pyruvate kinase II compare
PP_2000 -2.2 -4.1 amidophosphoribosyl transferase compare
PP_0719 -2.2 -3.7 ribosome-associated potassium-dependent informational ATP/GTPase compare
PP_0291 -2.2 -2.5 conserved protein of unknown function compare
PP_4994 -2.0 -7.2 conserved protein of unknown function compare
PP_0393 -2.0 -5.0 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_2370 -2.0 -2.9 conserved protein of unknown function compare
PP_0127 -2.0 -7.0 Thiol:disulfide interchange protein compare
PP_3417 -2.0 -7.0 D-gluconate transporter compare
PP_5075 -1.9 -12.1 glutamate synthase (NADPH) beta subunit compare
PP_0833 -1.7 -3.2 queuine tRNA-ribosyltransferase compare
PP_3312 -1.6 -2.8 putative Heat shock protein compare
PP_3241 -1.6 -2.0 conserved exported protein of unknown function compare
PP_0856 -1.6 -6.0 conserved lipoprotein of unknown function compare
PP_5076 -1.6 -12.4 L-glutamate synthase(NADPH) alpha subunit compare
PP_5227 -1.5 -7.6 diaminopimelate decarboxylase compare
PP_3105 -1.5 -3.4 conserved membrane protein of unknown function compare
PP_1011 -1.5 -8.3 glucokinase compare
PP_0914 -1.3 -7.6 GGDEF domain protein compare
PP_1994 -1.3 -4.3 tRNA pseudouridine (38-40)synthase compare
PP_4058 -1.3 -8.3 1,4-alpha-glucan branching enzyme compare
PP_5048 -1.2 -6.1 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_4004 -1.2 -5.0 DNA translocase FtsK compare
PP_4804 -1.2 -3.9 RlpA-like lipoprotein compare
PP_5385 -1.2 -5.6 metal RND efflux outer membrane protein, CzcC family compare
PP_1589 -1.2 -7.1 uridylyltransferase compare
PP_5350 -1.2 -3.9 Transcriptional regulator, RpiR family compare
PP_4917 -1.2 -5.4 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_1237 -1.2 -2.9 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_0809 -1.1 -8.0 disulfide bond formation protein B compare
PP_1654 -1.1 -3.2 cysteine synthase B compare
PP_2378 -1.1 -3.4 Fe/S biogenesis protein NfuA compare
PP_5393 -1.1 -1.7 putative metal-binding chaperone compare
PP_1142 -1.1 -1.6 conserved protein of unknown function compare
PP_2720 -1.0 -1.8 conserved protein of unknown function compare
PP_0832 -1.0 -4.2 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_1015 -1.0 -4.3 mannose/glucose ABC transporter, glucose-binding periplasmic protein conserved
PP_1208 -0.9 -2.5 conserved protein of unknown function, SlyX family compare
PP_4121 -0.9 -4.7 NADH-quinone oxidoreductase subunit C/D compare
PP_2747 -0.9 -2.0 conserved protein of unknown function compare
PP_4122 -0.9 -1.9 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_5733 -0.9 -5.3 putative metal-binding protein compare
PP_1097 -0.9 -1.5 Methionine--tRNA ligase compare
PP_2302 -0.9 -4.7 DNA-binding, ATP-dependent protease compare
PP_0001 -0.9 -2.0 probable chromosome-partitioning protein compare
PP_3204 -0.9 -2.4 conserved protein of unknown function compare
PP_5386 -0.9 -6.6 Probable copper RND efflux membrane fusion protein, CzcB family compare
PP_1018 -0.9 -3.8 mannose/glucose ABC transporter - ATP binding subunit conserved
PP_2144 -0.9 -3.9 Transcriptional regulator, TetR family compare
PP_4098 -0.9 -2.3 UvrABC system protein C compare
PP_1017 -0.9 -4.3 mannose/glucose ABC transporter, permease protein conserved
PP_4546 -0.8 -3.7 ATP-dependent helicase HrpA compare
PP_4124 -0.8 -4.3 NADH-quinone oxidoreductase subunit G compare
PP_2568 -0.8 -1.3 Ring-cleaving dioxygenase compare
PP_5387 -0.8 -7.4 probable copper efflux transporter, CzcA family compare
PP_1493 -0.8 -2.2 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_1016 -0.8 -4.8 mannose/glucose ABC transporter, permease protein conserved
PP_2414 -0.8 -1.0 conserved exported protein of unknown function compare
PP_2196 -0.8 -2.4 agmatinase compare
PP_3730 -0.8 -1.3 Transcriptional regulatory protein AruR compare
PP_1812 -0.8 -2.1 conserved protein of unknown function compare
PP_1367 -0.8 -3.7 formyltetrahydrofolate hydrolase compare
PP_5582 -0.8 -1.4 conserved protein of unknown function compare
PP_1217 -0.8 -4.0 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_1176 -0.8 -1.2 conserved protein of unknown function compare
PP_1013 -0.8 -4.5 Sensor histidine kinase compare
PP_1216 -0.8 -2.4 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_3726 -0.8 -1.7 Enoyl-CoA hydratase/isomerase family protein compare
PP_3789 -0.8 -4.1 putative Efflux transporter compare
PP_0801 -0.8 -1.2 conserved exported protein of unknown function compare
PP_0685 -0.8 -1.2 conserved protein of unknown function compare
PP_4787 -0.8 -2.6 putative protein with nucleoside triphosphate hydrolase domain compare
PP_4370 -0.7 -3.1 Flagellar hook-basal body complex protein FliE compare
PP_2306 -0.7 -2.2 conserved exported protein of unknown function compare
PP_5508 -0.7 -1.1 conserved protein of unknown function compare
PP_4964 -0.7 -2.6 D-erythrose 4-phosphate dehydrogenase compare
PP_0377 -0.7 -1.7 coenzyme PQQ synthesis protein D compare
PP_4966 -0.7 -1.2 transcriptional regulator of methionine metabolism compare
PP_1012 -0.7 -3.4 DNA-binding response regulator compare
PP_0775 -0.7 -1.6 conserved protein of unknown function compare
PP_0022 -0.7 -1.1 hypothetical protein compare
PP_4199 -0.7 -1.1 putative Lipoprotein compare
PP_1304 -0.7 -4.8 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_3519 -0.7 -1.2 putative Lipoprotein compare
PP_0307 -0.7 -1.6 conserved exported protein of unknown function compare
PP_2820 -0.7 -1.6 HTH-type transcriptional regulator nfxB compare
PP_0643 -0.7 -1.9 protein of unknown function compare
PP_0513 -0.7 -2.4 DNA-binding transcriptional repressor NrdR-Zn2+-ATP/dATP compare
PP_5423 -0.7 -1.0 conserved membrane protein of unknown function compare
PP_2718 -0.7 -2.0 arsenic resistance transcriptional regulator compare
PP_0855 -0.7 -1.7 conserved protein of unknown function compare
PP_0122 -0.7 -2.1 conserved exported protein of unknown function compare
PP_3715 -0.7 -2.3 Muconate cycloisomerase 1 compare
PP_4196 -0.7 -2.1 conserved exported protein of unknown function compare
PP_3539 -0.7 -1.9 putative Transcriptional regulator compare
PP_4120 -0.7 -2.7 NADH-quinone oxidoreductase subunit B compare
PP_0261 -0.7 -3.7 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_1553 -0.7 -0.8 conserved protein of unknown function compare
PP_5324 -0.7 -1.6 Response regulator compare
PP_0379 -0.7 -3.4 Coenzyme PQQ synthesis protein B compare
PP_4424 -0.7 -2.1 Uncharacterized HTH-type transcriptional regulator y4tD compare
PP_4988 -0.7 -3.6 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_4481 -0.7 -4.2 Succinylornithine transaminase/acetylornithine aminotransferase compare
PP_5007 -0.6 -1.4 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_1734 -0.6 -2.7 Probable septum site-determining protein MinC compare
PP_1322 -0.6 -1.1 putative Lipoprotein compare
PP_0610 -0.6 -2.4 conserved exported protein of unknown function compare
PP_4204 -0.6 -2.9 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_0063 -0.6 -3.0 putative Lipid A biosynthesis lauroyl acyltransferase compare
PP_0378 -0.6 -3.7 Pyrroloquinoline-quinone synthase compare
PP_0260 -0.6 -3.2 ADP-sugar pyrophosphorylase compare
PP_4126 -0.6 -1.4 NADH-quinone oxidoreductase subunit I compare
PP_5028 -0.6 -2.8 proline iminopeptidase compare
PP_5644 -0.6 -2.1 conserved membrane protein of unknown function compare
PP_2737 -0.6 -0.9 Oxidoreductase, short-chain dehydrogenase/reductase family compare
PP_5047 -0.6 -2.8 two-component system sensory histidine kinase/phosphatase GlnL/GlnG compare
PP_1917 -0.6 -3.8 4-amino-4-deoxychorismate lyase compare
PP_4504 -0.6 -1.3 conserved exported protein of unknown function compare
PP_2929 -0.6 -4.0 Carboxynorspermidine/carboxyspermidine decarboxylase compare
PP_5327 -0.6 -2.9 putative phosphate ABC transporter, permease subunit compare
PP_2388 -0.6 -2.5 Transporter, LysE family compare
PP_1038 -0.6 -1.8 conserved protein of unknown function compare
PP_2330 -0.6 -2.9 conserved protein of unknown function compare
PP_5654 -0.6 -1.5 putative phosphotriesterase compare
PP_3014 -0.6 -1.5 conserved exported protein of unknown function compare
PP_4480 -0.6 -3.5 arginine N-succinyltransferase, subunit alpha compare
PP_4942 -0.6 -2.0 conserved protein of unknown function compare
PP_0276 -0.6 -1.1 Transcriptional regulator, Cro/CI family compare
PP_1770 -0.6 -0.9 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_4342 -0.6 -2.9 flagellar synthesis regulator, putative ATPase compare
PP_4844 -0.6 -1.8 putative Urea ABC transporter, ATP-binding protein compare
PP_3649 -0.6 -2.4 Transcriptional regulator, GntR family compare
PP_1430 -0.6 -3.9 putative periplasmic serine endoprotease DegP-like compare
PP_1764 -0.6 -2.2 Phosphoglycolate phosphatase 2 compare
PP_4131 -0.6 -3.3 NADH-quinone oxidoreductase subunit N compare


Specific Phenotypes

For 1 genes in this experiment

For carbon source D-Glucose in Pseudomonas putida KT2440

For carbon source D-Glucose across organisms