Experiment set5IT075 for Pseudomonas putida KT2440

Compare to:

D-Glucose carbon source

200 most important genes:

  gene name fitness t score description  
PP_0293 -7.0 -4.8 Imidazole glycerol phosphate synthase subunit HisF compare
PP_0184 -6.7 -6.5 Argininosuccinate lyase compare
PP_0422 -6.4 -6.3 Indole-3-glycerol phosphate synthase compare
PP_0290 -6.3 -8.6 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0082 -6.0 -4.2 tryptophan synthase alpha chain compare
PP_2168 -5.9 -11.4 Transaldolase compare
PP_0967 -5.9 -11.2 histidinol-phosphate aminotransferase (EC 2.6.1.9) (from data) compare
PP_1088 -5.9 -16.0 Argininosuccinate synthase compare
PP_4679 -5.8 -6.9 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_0083 -5.8 -6.9 tryptophan synthase beta chain compare
PP_5185 -5.8 -8.8 acetylglutamate kinase-like protein (regulatory domain)/amino acid N-acetyltransferase compare
PP_4678 -5.7 -14.8 Ketol-acid reductoisomerase compare
PP_0420 -5.6 -12.5 aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex compare
PP_4680 -5.5 -13.8 acetohydroxybutanoate synthase / acetolactate synthase compare
PP_4799 -5.5 -3.8 putative Muramoyltetrapeptide carboxypeptidase compare
PP_1995 -5.5 -10.5 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_1985 -5.4 -7.4 3-isopropylmalate dehydratase large subunit compare
PP_5014 -5.4 -5.3 Phosphoribosyl-AMP cyclohydrolase compare
PP_1988 -5.3 -11.3 3-isopropylmalate dehydrogenase compare
PP_2371 -5.2 -7.9 Sulphite reductase hemoprotein, beta subunit compare
PP_0966 -5.1 -13.1 Histidinol dehydrogenase compare
PP_0965 -5.1 -12.7 ATP phosphoribosyltransferase (EC 2.4.2.17) (from data) compare
PP_3511 -5.1 -10.8 Branched-chain-amino-acid aminotransferase compare
PP_0417 -5.1 -19.8 Anthranilate synthase component 1 compare
PP_0691 -5.1 -5.7 Glutamate 5-kinase compare
PP_4909 -5.0 -10.2 phosphoserine phosphatase compare
PP_4890 -5.0 -7.6 ATP phosphoribosyltransferase regulatory subunit compare
PP_5097 -5.0 -16.6 homoserine O-acetyltransferase compare
PP_5289 -5.0 -6.9 Acetylglutamate kinase compare
PP_5015 -4.8 -6.5 phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31) (from data) compare
PP_5303 -4.5 -8.6 aminoacrylate/iminopropionate hydrolase/deaminase compare
PP_4723 -4.5 -6.8 Carbamoyl-phosphate synthase large chain compare
PP_0421 -4.5 -8.7 Anthranilate phosphoribosyltransferase compare
PP_0292 -4.4 -4.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_1986 -4.3 -4.2 3-isopropylmalate dehydratase small subunit compare
PP_5098 -4.3 -11.1 methionine biosynthesis protein MetW compare
PP_5155 -4.3 -8.2 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_5128 -4.3 -9.7 Dihydroxy-acid dehydratase compare
PP_1079 -4.3 -9.1 Ornithine carbamoyltransferase compare
PP_1022 -4.3 -9.1 glucose 6-phosphate-1-dehydrogenase compare
PP_1025 -4.2 -12.9 2-isopropylmalate synthase compare
PP_2001 -4.2 -10.1 O-succinylhomoserine sulfhydrylase compare
PP_4999 -4.0 -2.8 dihydroorotase-like protein compare
PP_0289 -4.0 -8.4 Imidazoleglycerol-phosphate dehydratase compare
PP_5347 -3.9 -14.6 pyruvate carboxylase subunit A compare
PP_4724 -3.9 -4.6 Carbamoyl-phosphate synthase small chain compare
PP_2370 -3.9 -5.2 conserved protein of unknown function compare
PP_5346 -3.8 -12.1 pyruvate carboxylase subunit B compare
PP_3999 -3.8 -10.6 Uroporphyrinogen-III C-methyltransferase/Precorrin-2 dehydrogenase/Sirohydrochlorin ferrochelatase compare
PP_2327 -3.8 -9.8 transcriptional dual regulator / CysB-O-acetyl-L-serine compare
PP_4696 -3.6 -9.8 Nitrogen regulation protein NR(I) compare
PP_5348 -3.2 -9.2 Transcriptional regulator, LysR family compare
PP_4693 -3.0 -6.9 RNA polymerase-binding transcription factor DksA compare
PP_1656 -2.9 -6.9 ATP:GTP 3'-pyrophosphotransferase compare
PP_0760 -2.9 -6.5 conserved membrane protein of unknown function compare
PP_0339 -2.8 -4.2 Pyruvate dehydrogenase E1 component compare
PP_0393 -2.7 -5.4 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_2000 -2.7 -3.6 amidophosphoribosyl transferase compare
PP_1362 -2.7 -8.1 pyruvate kinase II compare
PP_4700 -2.7 -6.5 pantothenate synthetase compare
PP_3105 -2.7 -4.6 conserved membrane protein of unknown function compare
PP_1111 -2.6 -6.4 putative Synthetase compare
PP_1110 -2.5 -3.3 serine acetyltransferase compare
PP_1664 -2.4 -6.4 phosphoribosylglycinamide formyltransferase 1 compare
PP_3790 -2.4 -9.7 diaminopimelate epimerase compare
PP_1109 -2.4 -10.9 Transcriptional regulator, GntR family compare
PP_0291 -2.1 -2.3 conserved protein of unknown function compare
PP_0593 -2.1 -2.1 putative ribosome-binding factor compare
PP_2328 -2.0 -6.7 Phosphoadenosine phosphosulfate reductase compare
PP_5350 -1.9 -5.0 Transcriptional regulator, RpiR family compare
PP_5075 -1.9 -10.6 glutamate synthase (NADPH) beta subunit compare
PP_1912 -1.8 -6.1 Phosphate acyltransferase compare
PP_0127 -1.8 -6.3 Thiol:disulfide interchange protein compare
PP_3417 -1.7 -7.1 D-gluconate transporter compare
PP_5095 -1.7 -2.5 pyrroline-5-carboxylate reductase compare
PP_5227 -1.6 -9.2 diaminopimelate decarboxylase compare
PP_0914 -1.5 -8.5 GGDEF domain protein compare
PP_1994 -1.5 -4.9 tRNA pseudouridine (38-40)synthase compare
PP_1011 -1.5 -9.1 glucokinase compare
PP_0377 -1.5 -2.9 coenzyme PQQ synthesis protein D compare
PP_5076 -1.4 -11.2 L-glutamate synthase(NADPH) alpha subunit compare
PP_0856 -1.4 -5.6 conserved lipoprotein of unknown function compare
PP_4902 -1.4 -2.9 Oligoribonuclease compare
PP_1589 -1.3 -8.5 uridylyltransferase compare
PP_1017 -1.3 -7.0 mannose/glucose ABC transporter, permease protein conserved
PP_2414 -1.3 -2.0 conserved exported protein of unknown function compare
PP_1237 -1.3 -2.5 4-hydroxy-tetrahydrodipicolinate synthase compare
PP_1898 -1.2 -3.1 MotA/TolQ/ExbB proton channel family protein compare
PP_1208 -1.2 -3.9 conserved protein of unknown function, SlyX family compare
PP_4058 -1.2 -8.3 1,4-alpha-glucan branching enzyme compare
PP_0809 -1.1 -7.9 disulfide bond formation protein B compare
PP_5456 -1.1 -2.1 conserved protein of unknown function compare
PP_5701 -1.1 -2.4 conserved protein of unknown function compare
PP_4997 -1.1 -1.2 pyrimidine operon regulatory protein/uracil phosphoribosyltransferase compare
PP_2402 -1.1 -2.8 putative Sensor histidine kinase compare
PP_4994 -1.1 -4.9 conserved protein of unknown function compare
PP_1770 -1.1 -2.1 3-phosphoshikimate 1-carboxyvinyltransferase compare
PP_4952 -1.1 -2.4 ATP-dependent RNA helicase, specific for 23S rRNA compare
PP_5048 -1.1 -5.4 two-component system DNA-binding transcriptional dual regulator GlnL/GlnG compare
PP_4122 -1.1 -2.7 proton-pumping NADH:ubiquinone oxidoreductase, respiratory complex I, subunit E compare
PP_4804 -1.1 -2.4 RlpA-like lipoprotein compare
PP_4004 -1.0 -3.7 DNA translocase FtsK compare
PP_1734 -1.0 -3.7 Probable septum site-determining protein MinC compare
PP_1216 -1.0 -2.8 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_1062 -1.0 -3.3 MutT/nudix family protein compare
PP_3876 -1.0 -2.1 conserved protein of unknown function compare
PP_t12 -1.0 -1.3 tRNA-Thr compare
PP_4917 -1.0 -4.8 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_2976 -1.0 -1.2 putative transposase compare
PP_5007 -1.0 -2.5 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_2747 -0.9 -1.5 conserved protein of unknown function compare
PP_4546 -0.9 -4.3 ATP-dependent helicase HrpA compare
PP_0276 -0.9 -1.5 Transcriptional regulator, Cro/CI family compare
PP_0092 -0.9 -2.5 putative lipoprotein compare
PP_1015 -0.9 -5.1 mannose/glucose ABC transporter, glucose-binding periplasmic protein conserved
PP_2378 -0.9 -2.8 Fe/S biogenesis protein NfuA compare
PP_2820 -0.9 -2.1 HTH-type transcriptional regulator nfxB compare
PP_2433 -0.9 -2.6 conserved protein of unknown function compare
PP_1654 -0.9 -2.8 cysteine synthase B compare
PP_1493 -0.9 -2.3 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_1016 -0.8 -5.1 mannose/glucose ABC transporter, permease protein conserved
PP_3891 -0.8 -3.0 conserved protein of unknown function compare
PP_2144 -0.8 -3.1 Transcriptional regulator, TetR family compare
PP_2302 -0.8 -4.8 DNA-binding, ATP-dependent protease compare
PP_5327 -0.8 -3.6 putative phosphate ABC transporter, permease subunit compare
PP_1303 -0.8 -3.3 Sulfate adenylyltransferase subunit 2 compare
PP_1018 -0.8 -4.7 mannose/glucose ABC transporter - ATP binding subunit conserved
PP_4684 -0.8 -4.6 conserved protein of unknown function with kinase-like domain compare
PP_2903 -0.8 -2.1 peptidyl-prolyl cis-trans isomerase B (rotamase B) compare
PP_5008 -0.8 -1.1 Poly granule-associated protein compare
PP_0775 -0.8 -1.9 conserved protein of unknown function compare
PP_1917 -0.8 -4.2 4-amino-4-deoxychorismate lyase compare
PP_1012 -0.8 -3.9 DNA-binding response regulator compare
PP_0957 -0.8 -2.1 D-arabinose 5-phosphate isomerase compare
PP_5328 -0.8 -2.3 putative phosphate transport system permease protein compare
PP_0378 -0.8 -3.8 Pyrroloquinoline-quinone synthase compare
PP_1553 -0.7 -1.1 conserved protein of unknown function compare
PP_5387 -0.7 -6.5 probable copper efflux transporter, CzcA family compare
PP_5652 -0.7 -2.1 conserved protein of unknown function, phage origin compare
PP_0022 -0.7 -1.1 hypothetical protein compare
PP_5331 -0.7 -2.5 Long-chain acyl-CoA thioester hydrolase compare
PP_4271 -0.7 -1.1 conserved protein of unknown function compare
PP_3519 -0.7 -1.2 putative Lipoprotein compare
PP_1733 -0.7 -2.3 membrane ATPase of the MinC-MinD-MinE system compare
PP_0855 -0.7 -2.5 conserved protein of unknown function compare
PP_4874 -0.7 -1.5 50S ribosomal protein L9 compare
PP_2509 -0.7 -3.1 conserved protein of unknown function compare
PP_4296 -0.7 -1.3 conserved exported protein of unknown function compare
PP_3789 -0.7 -3.8 putative Efflux transporter compare
PP_4964 -0.7 -2.2 D-erythrose 4-phosphate dehydrogenase compare
PP_2107 -0.7 -1.6 conserved protein of unknown function compare
PP_4121 -0.7 -3.6 NADH-quinone oxidoreductase subunit C/D compare
PP_5385 -0.7 -3.4 metal RND efflux outer membrane protein, CzcC family compare
PP_4227 -0.7 -1.8 conserved protein of unknown function compare
PP_4120 -0.7 -2.8 NADH-quinone oxidoreductase subunit B compare
PP_2908 -0.7 -3.0 DNA-binding transcriptional repressor compare
PP_4130 -0.7 -3.1 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_5329 -0.7 -2.1 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_4560 -0.7 -3.2 putative Ribonuclease BN compare
PP_2722 -0.7 -3.0 conserved protein of unknown function compare
PP_5621 -0.7 -1.3 protein of unknown function compare
PP_4136 -0.7 -0.8 Transcriptional regulator, LuxR family compare
PP_4942 -0.7 -2.3 conserved protein of unknown function compare
PP_2388 -0.6 -2.7 Transporter, LysE family compare
PP_4364 -0.6 -2.0 putative Anti-sigma F factor antagonist compare
PP_5028 -0.6 -2.9 proline iminopeptidase compare
PP_5628 -0.6 -1.0 conserved protein of unknown function compare
PP_0261 -0.6 -3.0 adenosine-3'(2'),5'-bisphosphate nucleotidase compare
PP_1304 -0.6 -4.0 sulfate adenylyltransferase subunit 1/adenylyl-sulfate kinase compare
PP_5229 -0.6 -2.7 conserved protein of unknown function compare
PP_5386 -0.6 -4.7 Probable copper RND efflux membrane fusion protein, CzcB family compare
PP_0949 -0.6 -3.7 putative ATP-binding protein UPF0042 compare
PP_1763 -0.6 -2.7 putative oxidoreductase compare
PP_1038 -0.6 -1.5 conserved protein of unknown function compare
PP_0425 -0.6 -2.4 conserved protein of unknown function compare
PP_2806 -0.6 -2.6 Transcriptional regulator, TetR family compare
PP_0379 -0.6 -3.5 Coenzyme PQQ synthesis protein B compare
PP_4124 -0.6 -3.1 NADH-quinone oxidoreductase subunit G compare
PP_3603 -0.6 -3.5 Transcriptional regulator, GntR family compare
PP_5022 -0.6 -1.5 Glutamine transport ATP-binding protein GlnQ compare
PP_1367 -0.6 -3.3 formyltetrahydrofolate hydrolase compare
PP_4837 -0.6 -2.4 conserved protein of unknown function compare
PP_1906 -0.6 -2.5 ribosomal large subunit pseudouridine synthase C compare
PP_2345 -0.6 -1.8 conserved exported protein of unknown function compare
PP_0040 -0.6 -2.1 hypothetical protein compare
PP_0833 -0.6 -1.4 queuine tRNA-ribosyltransferase compare
PP_3787 -0.6 -3.5 conserved protein of unknown function compare
PP_1217 -0.6 -2.5 Holliday junction ATP-dependent DNA helicase RuvB compare
PP_0959 -0.6 -1.7 phospholipid ABC transporter compare
PP_4642 -0.6 -0.8 Cyclic diguanosine monophosphate-binding protein compare
PP_2203 -0.6 -1.5 conserved protein of unknown function compare
PP_1503 -0.6 -2.2 conserved protein of unknown function compare
PP_0980 -0.6 -3.5 Probable cytosol aminopeptidase compare
PP_5243 -0.6 -2.9 putative hydrolase compare
PP_4966 -0.6 -2.1 transcriptional regulator of methionine metabolism compare
PP_3551 -0.6 -1.0 DNA-binding response regulator, LuxR family compare
PP_2720 -0.6 -1.1 conserved protein of unknown function compare
PP_4214 -0.6 -1.6 pyoverdine biosynthesis related protein compare
PP_2712 -0.6 -2.1 conserved exported protein of unknown function compare
PP_4204 -0.6 -2.8 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare


Specific Phenotypes

None in this experiment

For Pseudomonas putida KT2440 in carbon source experiments

For carbon source D-Glucose across organisms