Experiment set5IT074 for Agrobacterium fabrum C58

Compare to:

R2A with Novobiocin sodium salt 0.002 mM

200 most important genes:

  gene name fitness t score description  
Atu3763 -5.8 -4.0 hypothetical protein compare
Atu4217 -4.5 -3.7 TetR family transcriptional regulator compare
Atu2728 -3.5 -7.4 beta (1-->2) glucan export ATP-binding protein compare
Atu1446 -2.5 -3.4 two component response regulator compare
Atu0723 -2.4 -3.3 FAD dependent oxidoreductase compare
Atu0971 -2.3 -6.2 two component sensor kinase compare
Atu0103 -2.3 -9.0 penicillin-binding protein compare
Atu4072 -2.3 -2.6 nodulation protein N compare
Atu2582 -2.1 -7.1 UDP-glucose/GDP-mannose dehydrogenase compare
Atu2207 -2.1 -5.1 two component sensor kinase compare
Atu0346 -2.1 -3.8 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu1447 -2.0 -3.2 two component sensor kinase compare
Atu3730 -1.9 -2.5 hypothetical protein compare
Atu4148 -1.9 -4.9 UDP-glucuronic acid epimerase compare
Atu0434 -1.9 -2.7 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu2583 -1.8 -9.9 glycosyltransferase compare
Atu0026 -1.8 -1.3 hypothetical protein compare
Atu2592 -1.8 -5.5 hypothetical protein compare
Atu2710 -1.7 -5.6 hypothetical protein compare
Atu3634 -1.7 -5.5 penicillin-binding protein dacf precursor compare
Atu8087 -1.7 -1.6 putative peptidoglycan binding protein compare
Atu2590 -1.7 -6.5 hypothetical protein compare
Atu1030 -1.7 -2.0 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu4149 -1.7 -7.7 UDP-glucose 6-dehydrogenase compare
Atu0687 -1.6 -3.0 hypothetical protein compare
Atu2591 -1.6 -5.7 glucosyltransferase compare
Atu2577 -1.6 -11.3 ABC transporter, nucleotide binding/ATPase protein compare
Atu1028 -1.6 -3.3 hypothetical protein compare
Atu2392 -1.6 -10.0 HlyD family secretion protein compare
Atu2289 -1.5 -8.5 anthranilate synthase component I and II compare
Atu8167 -1.5 -8.5 putative transmembrane protein compare
Atu6098 -1.5 -0.9 transcriptional regulator, HTH family compare
Atu2393 -1.5 -11.6 Acr family transporter compare
Atu1688 -1.5 -4.4 indole-3-glycerol-phosphate synthase compare
Atu0097 -1.5 -6.2 hypothetical protein compare
Atu1646 -1.4 -5.5 ABC transporter, nucleotide binding/ATPase protein compare
Atu6045 -1.4 -2.0 replication protein C compare
Atu2584 -1.4 -4.1 hypothetical protein compare
Atu0043 -1.4 -2.4 imidazoleglycerol-phosphate dehydratase compare
Atu2205 -1.4 -3.1 transcriptional regulator, MarR family compare
Atu0972 -1.4 -5.8 lipA protein compare
Atu0486 -1.4 -3.9 dihydroorotate dehydrogenase compare
Atu0025 -1.4 -2.4 hypothetical protein compare
Atu6165 -1.3 -1.4 hypothetical protein compare
Atu4317 -1.3 -3.5 TetR family transcriptional regulator compare
Atu1307 -1.3 -3.5 dihydroorotase compare
Atu1645 -1.3 -8.1 ABC transporter, substrate binding protein compare
Atu1644 -1.3 -3.1 hypothetical protein compare
Atu0421 -1.3 -1.4 ABC transporter, membrane spanning protein compare
Atu1855 -1.2 -6.6 MFS permease compare
Atu2616 -1.2 -7.2 hypothetical protein compare
Atu1647 -1.2 -6.8 ABC transporter, membrane spanning protein compare
Atu1354 -1.2 -1.1 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu2057 -1.2 -2.8 DNA helicase II compare
Atu0184 -1.2 -2.9 glucokinase compare
Atu4451 -1.2 -7.1 mannitol 2-dehydrogenase compare
Atu4711 -1.2 -4.9 two component sensor kinase compare
Atu4346 -1.2 -4.9 hypothetical protein compare
Atu0017 -1.1 -1.5 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu1619 -1.1 -2.4 protein-export membrane protein SECG compare
Atu0422 -1.1 -1.5 ABC transporter, membrane spanning protein compare
Atu2640 -1.1 -3.2 hypothetical protein compare
Atu0298 -1.1 -4.8 orotidine 5 compare
Atu1359 -1.1 -1.2 dnaK deletion suppressor protein compare
Atu0399 -1.0 -4.1 dihydroorotase compare
Atu3727 -1.0 -2.8 hypothetical protein compare
Atu2585 -1.0 -3.0 hypothetical protein compare
Atu2615 -1.0 -6.0 hypothetical protein compare
Atu1308 -1.0 -3.1 aspartate carbamoyl transferase catalytic subunit compare
Atu2052 -1.0 -4.4 hypothetical protein compare
Atu5125 -1.0 -3.3 GntR family transcriptional regulator compare
Atu0361 -0.9 -3.2 transcriptional regulator compare
Atu2073 -0.9 -3.0 membrane protein compare
Atu0931 -0.9 -6.1 penicillin binding protein compare
Atu0647 -0.9 -3.8 phosphoribosylamine--glycine ligase compare
Atu2692 -0.9 -3.4 intracellular septation protein compare
Atu0976 -0.9 -1.2 cycL protein compare
Atu0039 -0.9 -1.2 imidazoleglycerol-phosphate synthase cyclase compare
Atu1687 -0.9 -3.4 anthranilate phosphoribosyltransferase compare
Atu1714 -0.9 -1.4 exonuclease III compare
Atu0510 -0.9 -5.5 pH adaption potassium efflux system protein compare
Atu3353 -0.9 -5.7 mannose-1-phosphate guanylyltransferase compare
Atu2183 -0.9 -5.6 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu2684 -0.9 -1.2 hypothetical protein compare
Atu3598 -0.8 -1.3 thiol:disulfide interchange protein compare
Atu1175 -0.8 -1.5 hypothetical protein compare
Atu1021 -0.8 -2.6 outer membrane protein compare
Atu3750 -0.8 -2.4 thiamine-phosphate pyrophosphorylase compare
Atu2127 -0.8 -4.5 L-carnitine dehydratase compare
Atu8161 -0.8 -1.3 hypothetical protein compare
Atu1468 -0.8 -4.7 hypothetical protein compare
Atu1163 -0.8 -1.5 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu1542 -0.8 -3.0 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu2439 -0.8 -1.0 hypothetical protein compare
Atu2802 -0.8 -3.4 precorrin-8X methylmutase compare
Atu0029 -0.8 -2.6 S-adenosylhomocysteine hydrolase compare
Atu1845 -0.8 -2.7 phosphoribosylformylglycinamidine synthase I compare
Atu0400 -0.8 -2.6 orotate phosphoribosyltransferase compare
Atu2040 -0.8 -3.6 phosphoserine phosphatase compare
Atu0533 -0.7 -2.3 putative inhibitor of septum formation compare
Atu4884 -0.7 -2.1 hypothetical protein compare
Atu2614 -0.7 -3.2 hypothetical protein compare
Atu4166 -0.7 -1.9 UDP-glucose 4-epimerase compare
Atu2793 -0.7 -2.3 cobyrinic acid a,c-diamide synthase compare
Atu2766 -0.7 -6.3 NAD-glutamate dehydrogenase compare
Atu0638 -0.7 -1.6 hypothetical protein compare
Atu4616 -0.7 -1.3 dTDP-4-dehydrorhamnose reductase compare
Atu4418 -0.7 -3.4 glutaryl-CoA dehydrogenase compare
Atu2722 -0.7 -3.4 porin compare
Atu0565 -0.7 -3.0 hypothetical protein compare
Atu1075 -0.7 -3.3 amidophosphoribosyltransferase compare
Atu0598 -0.7 -3.9 phosphogluconate dehydratase compare
Atu0479 -0.7 -2.6 ABC transporter, substrate binding protein (amino acid) compare
Atu1891 -0.7 -2.4 cobalamin biosynthesis protein compare
Atu1140 -0.7 -2.1 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu2267 -0.7 -2.8 hypothetical protein compare
Atu4613 -0.7 -5.0 glycosyltransferase compare
Atu2796 -0.7 -2.8 precorrin-4 C11-methyltransferase compare
Atu1141 -0.7 -2.5 Phosphoribosylglycinamide synthetase compare
Atu2504 -0.7 -3.5 transcriptional regulator, GntR family compare
Atu1056 -0.7 -3.8 hypothetical protein compare
Atu1708 -0.7 -3.8 hypothetical protein compare
Atu2801 -0.7 -2.2 precorrin-2 C20 methyltransferase compare
Atu0926 -0.6 -2.2 hypothetical protein compare
Atu4223 -0.6 -1.6 sarcosine oxidase delta subunit compare
Atu0997 -0.6 -1.9 hypothetical protein compare
Atu1620 -0.6 -4.2 triosephosphate isomerase compare
Atu3780 -0.6 -2.6 hypothetical protein compare
Atu0093 -0.6 -2.2 Recombination protein compare
Atu2554 -0.6 -0.8 lysyl-tRNA synthetase compare
Atu4540 -0.6 -2.0 protocatechuate 3,4-dioxygenase subunit beta compare
Atu8180 -0.6 -2.2 hypothetical protein compare
Atu2551 -0.6 -4.6 RND multidrug efflux transporter compare
Atu0511 -0.6 -2.9 pH adaption potassium efflux system protein compare
Atu0435 -0.6 -1.2 tRNA-Gly compare
Atu6138 -0.6 -3.6 Repressor of the acc and arc operons compare
Atu1260 -0.6 -1.0 hypothetical protein compare
Atu0941 -0.6 -0.6 hypothetical protein compare
Atu3775 -0.6 -1.6 hypothetical protein compare
Atu0846 -0.6 -1.2 transcriptional regulator, MarR family compare
Atu8190 -0.6 -2.6 hypothetical protein compare
Atu5516 -0.6 -4.7 hypothetical protein compare
Atu2550 -0.6 -4.1 RND multidrug efflux membrane permease compare
Atu3485 -0.6 -3.7 short chain dehydrogenase compare
Atu0640 -0.6 -1.1 hypothetical protein compare
Atu2113 -0.6 -1.3 N-acetylmuramoyl-L-alanine amidase compare
Atu1360 -0.6 -4.0 hypothetical protein compare
Atu3469 -0.6 -1.2 phosphoglyceromutase compare
Atu3740 -0.6 -3.3 fructose bisphosphate aldolase compare
Atu1286 -0.6 -2.1 hypothetical protein compare
Atu0973 -0.6 -3.2 cycH protein compare
Atu3668 -0.6 -1.9 siderophore biosynthesis protein compare
Atu2730 -0.6 -3.6 beta (1-->2) glucan biosynthesis protein compare
Atu3311 -0.6 -4.3 phosphomannose isomerase compare
Atu4614 -0.6 -3.6 glycosyltransferase compare
Atu2304 -0.6 -4.0 bacteroid development protein compare
Atu4161 -0.5 -0.7 hypothetical protein compare
Atu1225 -0.5 -1.1 hypothetical protein compare
Atu4063 -0.5 -4.1 O-linked GlcNAc transferase compare
Atu2804 -0.5 -3.8 cobaltochelatase subunit compare
Atu0630 -0.5 -1.5 hypothetical protein compare
Atu0344 -0.5 -1.8 hypothetical protein compare
Atu2808 -0.5 -2.7 cobyric acid synthase compare
Atu3739 -0.5 -1.4 phosphoglycerate kinase compare
Atu3798 -0.5 -1.9 TetR family transcriptional regulator compare
Atu3510 -0.5 -1.5 amidohydrolase compare
Atu4075 -0.5 -2.2 glycogen synthase compare
Atu4366 -0.5 -1.6 short chain dehydrogenase compare
Atu1445 -0.5 -2.2 two component sensor kinase compare
Atu8056 -0.5 -0.7 hypothetical protein compare
Atu3628 -0.5 -2.4 hypothetical protein compare
Atu1774 -0.5 -2.0 ABC transporter, substrate binding protein (peptide) compare
Atu1355 -0.5 -2.3 hypothetical protein compare
Atu4567 -0.5 -2.6 ROK family transcriptional regulator compare
Atu8054 -0.5 -0.4 hypothetical protein compare
Atu0189 -0.5 -1.8 ABC transporter, membrane spanning protein (peptide) compare
Atu1364 -0.5 -2.5 ATP-dependent Clp protease, ATP-binding subunit compare
Atu2789 -0.5 -2.5 hypothetical protein compare
Atu3579 -0.5 -1.7 lactoylglutathione lyase compare
Atu3226 -0.5 -2.8 GntR family transcriptional regulator compare
Atu1588 -0.5 -3.6 homoserine dehydrogenase compare
Atu0031 -0.5 -0.8 PTS system, IIA component compare
Atu0038 -0.5 -2.3 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu3754 -0.5 -1.5 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu4618 -0.5 -3.2 dTDP-rhamnose-3,5-epimerase compare
Atu0508 -0.5 -1.8 PH Adaption potassium efflux system compare
Atu2217 -0.5 -1.9 hypothetical protein compare
Atu2115 -0.5 -2.9 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu2130 -0.5 -1.5 hypothetical protein compare
Atu4615 -0.5 -3.3 glucose-1-phosphate thymidylyltransferase compare
Atu5046 -0.5 -1.7 hypothetical protein compare
Atu3706 -0.5 -2.6 D-3-phosphoglycerate dehydrogenase compare
Atu0768 -0.5 -3.1 cytochrome-c oxidase chain I compare
Atu5057 -0.5 -0.9 hypothetical protein compare
Atu2043 -0.5 -2.8 htrA family protein compare
Atu3578 -0.5 -2.0 glycerol-3-phosphate dehydrogenase compare
Atu0876 -0.5 -1.0 superoxide dismutase compare
Atu0788 -0.5 -2.3 hypothetical protein compare
Atu1422 -0.5 -3.0 transcriptional regulator, MarR family compare
Atu2827 -0.5 -1.9 hypothetical protein compare


Specific Phenotypes

For 5 genes in this experiment

For stress Novobiocin sodium salt in Agrobacterium fabrum C58

For stress Novobiocin sodium salt across organisms