Experiment set5IT072 for Agrobacterium fabrum C58

Compare to:

R2A with Nitrofurantoin 0.4 mg/mL

200 most important genes:

  gene name fitness t score description  
Atu0269 -6.0 -4.1 exodeoxyribonuclease VII large subunit compare
Atu1077 -5.9 -4.1 DNA repair protein compare
Atu2083 -5.4 -5.2 DNA repair protein RecN compare
Atu2583 -5.3 -6.3 glycosyltransferase compare
Atu2582 -5.2 -6.2 UDP-glucose/GDP-mannose dehydrogenase compare
Atu2590 -5.1 -8.5 hypothetical protein compare
Atu4149 -5.1 -9.7 UDP-glucose 6-dehydrogenase compare
Atu2591 -5.0 -6.0 glucosyltransferase compare
Atu2584 -4.7 -4.6 hypothetical protein compare
Atu2057 -4.6 -3.2 DNA helicase II compare
Atu2577 -4.5 -19.8 ABC transporter, nucleotide binding/ATPase protein compare
Atu0434 -4.5 -3.8 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu2480 -4.4 -11.0 transcriptional regulator, LysR family compare
Atu0093 -4.4 -5.2 Recombination protein compare
Atu2585 -4.3 -3.0 hypothetical protein compare
Atu4148 -4.3 -4.2 UDP-glucuronic acid epimerase compare
Atu1513 -3.9 -9.4 ABC excinuclease subunit A compare
Atu1129 -3.7 -8.2 excinuclease ABC chain C compare
Atu1039 -3.7 -5.4 DNA repair protein RecO compare
Atu1874 -3.7 -2.5 RecA protein compare
Atu2592 -3.5 -6.3 hypothetical protein compare
Atu0073 -3.5 -5.9 recF-like protein conserved
Atu2482 -3.4 -14.5 HlyD family secretion protein compare
Atu3469 -3.4 -3.3 phosphoglyceromutase compare
Atu8180 -3.1 -8.8 hypothetical protein compare
Atu2483 -3.0 -19.5 AcrB/AcrD/AcrF family protein conserved
Atu0017 -2.7 -2.6 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu3739 -2.6 -4.1 phosphoglycerate kinase compare
Atu3707 -2.5 -3.2 phosphoserine aminotransferase compare
Atu4217 -2.4 -3.0 TetR family transcriptional regulator compare
Atu5430 -2.0 -1.9 hypothetical protein compare
Atu3730 -2.0 -2.3 hypothetical protein compare
Atu4199 -2.0 -9.6 TetR family transcriptional regulator compare
Atu0103 -1.9 -9.5 penicillin-binding protein compare
Atu0346 -1.9 -3.2 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu2648 -1.8 -3.3 hypothetical protein compare
Atu1688 -1.8 -4.6 indole-3-glycerol-phosphate synthase compare
Atu0777 -1.7 -1.4 hypothetical protein compare
Atu0184 -1.7 -3.5 glucokinase compare
Atu0025 -1.7 -2.1 hypothetical protein compare
Atu1359 -1.7 -1.6 dnaK deletion suppressor protein compare
Atu8018 -1.6 -1.3 hypothetical protein compare
Atu4773 -1.6 -2.6 two component response regulator compare
Atu2207 -1.6 -4.7 two component sensor kinase compare
Atu2800 -1.6 -3.7 precorrin-3B C17-methyltransferase compare
Atu2289 -1.6 -8.8 anthranilate synthase component I and II compare
Atu2710 -1.5 -5.9 hypothetical protein compare
Atu2001 -1.5 -4.6 excinuclease ABC subunit B compare
Atu1327 -1.5 -3.9 NADH-ubiquinone oxidoreductase compare
Atu0422 -1.5 -1.3 ABC transporter, membrane spanning protein compare
Atu0598 -1.5 -7.4 phosphogluconate dehydratase compare
Atu2802 -1.5 -7.1 precorrin-8X methylmutase compare
Atu2805 -1.5 -5.7 cobalamin synthesis protein compare
Atu4108 -1.4 -6.6 ribonuclease D compare
Atu1030 -1.4 -1.5 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu8087 -1.4 -1.4 putative peptidoglycan binding protein compare
Atu3634 -1.4 -3.6 penicillin-binding protein dacf precursor compare
Atu1149 -1.4 -2.0 adenylate cyclase compare
Atu0769 -1.3 -1.6 protoheme IX farnesyltransferase compare
Atu1687 -1.3 -4.9 anthranilate phosphoribosyltransferase compare
Atu1714 -1.3 -2.0 exonuclease III compare
Atu1780 -1.2 -7.1 ATP-dependent DNA helicase compare
Atu1542 -1.2 -6.2 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu2801 -1.2 -4.2 precorrin-2 C20 methyltransferase compare
Atu3496 -1.2 -3.4 hypothetical protein compare
Atu0040 -1.2 -0.8 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu5501 -1.2 -2.5 hypothetical protein compare
Atu3009 -1.1 -1.4 exopolysaccharide production protein compare
Atu4711 -1.1 -4.8 two component sensor kinase compare
Atu8053 -1.1 -2.7 hypothetical protein compare
Atu0795 -1.1 -2.2 hypothetical protein compare
Atu0977 -1.1 -4.4 serine protease DO-like protease compare
Atu2807 -1.1 -6.3 cob(I)alamin adenosyltransferase compare
Atu1891 -1.1 -2.5 cobalamin biosynthesis protein compare
Atu8161 -1.1 -2.0 hypothetical protein compare
Atu1028 -1.1 -2.5 hypothetical protein compare
Atu5513 -1.0 -2.4 cold shock protein compare
Atu3585 -1.0 -4.2 glutathione S-transferase compare
Atu2200 -1.0 -3.0 cold shock protein compare
Atu2809 -1.0 -6.2 cobalamin biosynthesis protein compare
Atu2798 -1.0 -3.7 precorrin-6y methyltransferase compare
Atu0721 -1.0 -5.8 hypothetical protein compare
Atu2692 -1.0 -2.6 intracellular septation protein compare
Atu0488 -1.0 -3.0 hypothetical protein compare
Atu2804 -1.0 -5.6 cobaltochelatase subunit compare
Atu1983 -1.0 -3.6 hypothetical protein compare
Atu0030 -1.0 -1.4 phosphocarrier protein HPr compare
Atu2349 -1.0 -2.0 hypothetical protein compare
Atu0185 -1.0 -4.7 methylglyoxal synthase compare
Atu2787 -1.0 -1.1 hypothetical protein compare
Atu3031 -1.0 -1.3 hypothetical protein compare
Atu1906 -1.0 -5.9 ABC transporter, membrane spanning protein compare
Atu1904 -0.9 -1.6 transcriptional regulator compare
Atu0809 -0.9 -1.7 hypothetical protein compare
Atu4613 -0.9 -6.9 glycosyltransferase compare
Atu1774 -0.9 -4.6 ABC transporter, substrate binding protein (peptide) compare
Atu4317 -0.9 -1.8 TetR family transcriptional regulator compare
Atu1907 -0.9 -5.9 ABC transporter, nucleotide binding/ATPase protein compare
Atu1810 -0.9 -1.4 hypothetical protein compare
Atu2205 -0.9 -3.7 transcriptional regulator, MarR family compare
Atu1163 -0.9 -1.2 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu4567 -0.9 -4.6 ROK family transcriptional regulator compare
Atu2793 -0.9 -2.6 cobyrinic acid a,c-diamide synthase compare
Atu4618 -0.9 -5.4 dTDP-rhamnose-3,5-epimerase compare
Atu3280 -0.9 -4.0 GntR family transcriptional regulator compare
Atu2795 -0.9 -3.2 cobalamin biosynthetic protein compare
Atu2808 -0.9 -4.4 cobyric acid synthase compare
Atu2036 -0.8 -5.7 acetolactate synthase III, large subunit compare
Atu1902 -0.8 -2.7 transketolase compare
Atu0647 -0.8 -2.8 phosphoribosylamine--glycine ligase compare
Atu4897 -0.8 -1.5 hypothetical protein compare
Atu1364 -0.8 -3.3 ATP-dependent Clp protease, ATP-binding subunit compare
Atu2803 -0.8 -2.4 Cobalamin biosynthesis associated protein compare
Atu0050 -0.8 -3.2 two component response regulator compare
Atu2684 -0.8 -1.2 hypothetical protein compare
Atu2796 -0.8 -2.8 precorrin-4 C11-methyltransferase compare
Atu0972 -0.8 -2.8 lipA protein compare
Atu1110 -0.8 -1.9 cytosol aminopeptidase compare
Atu2650 -0.8 -5.2 glycerol-3-phosphate dehydrogenase compare
Atu4617 -0.8 -4.8 dTDP-D-glucose-4,6-dehydratase compare
Atu4013 -0.8 -4.1 adenylate cyclase compare
Atu3353 -0.8 -6.0 mannose-1-phosphate guanylyltransferase compare
Atu2192 -0.8 -1.2 hypothetical protein compare
Atu0361 -0.8 -2.2 transcriptional regulator compare
Atu1285 -0.8 -4.1 metal dependent hydrolase compare
Atu0723 -0.8 -1.6 FAD dependent oxidoreductase compare
Atu0514 -0.8 -5.2 methyl-accepting chemotaxis protein compare
Atu1454 -0.8 -5.0 siroheme synthase compare
Atu1446 -0.8 -1.7 two component response regulator compare
Atu8054 -0.8 -0.7 hypothetical protein compare
Atu4075 -0.8 -3.9 glycogen synthase compare
Atu4615 -0.8 -4.5 glucose-1-phosphate thymidylyltransferase compare
Atu0031 -0.8 -1.2 PTS system, IIA component compare
Atu2127 -0.8 -3.9 L-carnitine dehydratase compare
Atu1844 -0.7 -1.8 Phosphoribosylformylglycinamidine synthetase compare
Atu1307 -0.7 -2.4 dihydroorotase compare
Atu0520 -0.7 -3.6 chemotaxis receiver protein compare
Atu4418 -0.7 -2.3 glutaryl-CoA dehydrogenase compare
Atu2267 -0.7 -3.1 hypothetical protein compare
Atu0189 -0.7 -2.0 ABC transporter, membrane spanning protein (peptide) compare
Atu0051 -0.7 -3.0 two component sensor kinase compare
Atu1455 -0.7 -3.3 hypothetical protein compare
Atu0517 -0.7 -5.7 Chemotaxis protein histidine kinase compare
Atu3593 -0.7 -3.6 hypothetical protein compare
Atu2464 -0.7 -2.0 formyltetrahydrofolate deformylase compare
Atu2554 -0.7 -1.3 lysyl-tRNA synthetase compare
Atu2640 -0.7 -2.9 hypothetical protein compare
Atu1009 -0.7 -1.6 hypothetical protein compare
Atu2270 -0.7 -1.3 ATP-dependent Clp protease, proteolytic subunit compare
Atu0524 -0.7 -3.7 transcriptional regulator, LuxR family compare
Atu2183 -0.7 -4.4 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu0516 -0.7 -2.7 chemotaxis receiver protein compare
Atu1686 -0.7 -4.7 peptidyl-prolyl cis-trans isomerse D compare
Atu2348 -0.7 -3.1 sugar binding protein compare
Atu0421 -0.7 -1.0 ABC transporter, membrane spanning protein compare
Atu3911 -0.7 -2.2 hypothetical protein compare
Atu0876 -0.7 -0.9 superoxide dismutase compare
Atu0565 -0.7 -2.5 hypothetical protein compare
Atu1737 -0.7 -1.8 hypothetical protein compare
Atu0190 -0.7 -3.0 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu4477 -0.7 -3.5 TetR family transcriptional regulator compare
Atu4614 -0.7 -3.2 glycosyltransferase compare
Atu2073 -0.6 -2.4 membrane protein compare
Atu1062 -0.6 -1.3 phosphatidylserine synthase compare
Atu1308 -0.6 -2.3 aspartate carbamoyl transferase catalytic subunit compare
Atu1127 -0.6 -1.1 molybdopterin converting factor small subunit compare
Atu4589 -0.6 -2.1 transmembrane transport protein compare
Atu0595 -0.6 -4.5 ABC transporter, nucleotide binding/ATPase protein compare
Atu1845 -0.6 -3.0 phosphoribosylformylglycinamidine synthase I compare
Atu0518 -0.6 -4.2 chemotaxis methyltransferase compare
Atu0604 -0.6 -2.2 hypothetical protein compare
Atu0515 -0.6 -4.1 hypothetical protein compare
Atu0976 -0.6 -1.3 cycL protein compare
Atu2794 -0.6 -2.8 uroporphyrin-III C-methyltransferase compare
Atu8138 -0.6 -0.8 hypothetical protein compare
Atu4166 -0.6 -1.2 UDP-glucose 4-epimerase compare
Atu3706 -0.6 -3.1 D-3-phosphoglycerate dehydrogenase compare
Atu1141 -0.6 -3.2 Phosphoribosylglycinamide synthetase compare
Atu5443 -0.6 -2.9 TetR family transcriptional regulator compare
Atu3036 -0.6 -3.2 dipeptide ABC transporter permease compare
Atu1075 -0.6 -3.4 amidophosphoribosyltransferase compare
Atu3884 -0.6 -4.6 hypothetical protein compare
Atu0762 -0.6 -2.0 hypothetical protein compare
Atu0525 -0.6 -2.5 transcriptional regulator, LuxR family compare
Atu1447 -0.6 -1.8 two component sensor kinase compare
Atu1140 -0.6 -2.6 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu5114 -0.6 -1.3 hypothetical protein compare
Atu1645 -0.6 -3.0 ABC transporter, substrate binding protein compare
Atu2728 -0.6 -2.2 beta (1-->2) glucan export ATP-binding protein compare
Atu8190 -0.6 -1.2 hypothetical protein compare
Atu0101 -0.6 -2.0 cytochrome c compare
Atu1184 -0.6 -2.3 hypothetical protein compare
Atu0029 -0.6 -2.5 S-adenosylhomocysteine hydrolase compare
Atu4470 -0.6 -2.8 iron ABC transporter ATPase compare
Atu2320 -0.6 -2.0 transcriptional regulator, TetR family compare
Atu1647 -0.5 -3.3 ABC transporter, membrane spanning protein compare
Atu1355 -0.5 -2.7 hypothetical protein compare
Atu1734 -0.5 -1.4 hypothetical protein compare
Atu0659 -0.5 -2.3 NTP pyrophosphohydrolase, MutT family compare
Atu3429 -0.5 -1.0 hypothetical protein compare


Specific Phenotypes

For 9 genes in this experiment

For stress Nitrofurantoin in Agrobacterium fabrum C58

For stress Nitrofurantoin across organisms