Experiment set5IT072 for Agrobacterium fabrum C58
R2A with Nitrofurantoin 0.4 mg/mL
Group: stressMedia: R2A + Nitrofurantoin (0.4 mg/mL)
Culturing: Agro_ML11, 96 deep-well microplate; 0.8 mL volume, Aerobic, at 28 (C), shaken=700 rpm
By: Hans Carlson and Mitchell Thompson on 22-Jun-21
Media components: 0.5 g/L Bacto Peptone, 0.5 g/L casamino acids, 0.5 g/L Yeast Extract, 0.5 g/L D-Glucose, 0.5 g/L Starch, 0.3 g/L Potassium phosphate dibasic, 0.05 g/L Magnesium Sulfate Heptahydrate, 0.3 g/L Sodium pyruvate
Growth plate: 1B D10
Specific Phenotypes
For 9 genes in this experiment
For stress Nitrofurantoin in Agrobacterium fabrum C58
For stress Nitrofurantoin across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| DNA repair, bacterial RecFOR pathway | 1 |
| Multidrug Resistance Efflux Pumps | 1 |
| Multidrug efflux pump in Campylobacter jejuni (CmeABC operon) | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| tRNA processing | 10 | 10 | 2 |