Experiment set5IT071 for Agrobacterium fabrum C58

Compare to:

R2A with Rifampicin 0.0007 mM

200 most important genes:

  gene name fitness t score description  
Atu0723 -4.9 -3.4 FAD dependent oxidoreductase compare
Atu0017 -2.7 -2.6 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu1687 -2.4 -5.6 anthranilate phosphoribosyltransferase compare
Atu3623 -2.3 -6.5 DnaJ family molecular chaperone conserved
Atu2207 -2.3 -4.2 two component sensor kinase compare
Atu3469 -2.2 -3.3 phosphoglyceromutase compare
Atu0103 -2.2 -8.6 penicillin-binding protein compare
Atu0399 -2.2 -6.3 dihydroorotase compare
Atu0434 -2.1 -2.6 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu2289 -2.0 -10.6 anthranilate synthase component I and II compare
Atu2710 -1.9 -8.0 hypothetical protein compare
Atu3739 -1.9 -3.7 phosphoglycerate kinase compare
Atu0346 -1.8 -4.0 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu4451 -1.7 -8.1 mannitol 2-dehydrogenase compare
Atu1307 -1.7 -5.1 dihydroorotase compare
Atu0941 -1.7 -1.5 hypothetical protein compare
Atu0486 -1.7 -6.5 dihydroorotate dehydrogenase compare
Atu2205 -1.7 -4.2 transcriptional regulator, MarR family compare
Atu1308 -1.7 -6.0 aspartate carbamoyl transferase catalytic subunit compare
Atu1446 -1.6 -2.0 two component response regulator compare
Atu0769 -1.6 -2.6 protoheme IX farnesyltransferase compare
Atu1688 -1.6 -3.6 indole-3-glycerol-phosphate synthase compare
Atu0298 -1.4 -5.9 orotidine 5 compare
Atu2728 -1.4 -5.9 beta (1-->2) glucan export ATP-binding protein compare
Atu0184 -1.4 -2.5 glucokinase compare
Atu4773 -1.3 -2.6 two component response regulator compare
Atu3754 -1.3 -5.3 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu2616 -1.3 -8.4 hypothetical protein compare
Atu1355 -1.2 -4.3 hypothetical protein compare
Atu0400 -1.2 -3.4 orotate phosphoribosyltransferase compare
Atu0097 -1.2 -6.6 hypothetical protein conserved
Atu1891 -1.2 -2.9 cobalamin biosynthesis protein compare
Atu1030 -1.2 -1.6 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu3008 -1.1 -1.2 hypothetical protein compare
Atu1470 -1.1 -1.1 Camphor resistance protein compare
Atu1223 -1.1 -1.8 hypothetical protein compare
Atu1685 -1.1 -1.1 hypothetical protein compare
Atu0039 -1.0 -1.6 imidazoleglycerol-phosphate synthase cyclase compare
Atu0421 -1.0 -1.4 ABC transporter, membrane spanning protein compare
Atu2796 -1.0 -3.4 precorrin-4 C11-methyltransferase compare
Atu0031 -1.0 -1.6 PTS system, IIA component compare
Atu1588 -1.0 -6.2 homoserine dehydrogenase compare
Atu3634 -1.0 -5.1 penicillin-binding protein dacf precursor compare
Atu1686 -1.0 -6.0 peptidyl-prolyl cis-trans isomerse D compare
Atu2504 -1.0 -5.6 transcriptional regulator, GntR family compare
Atu1028 -1.0 -2.1 hypothetical protein compare
Atu2805 -1.0 -4.1 cobalamin synthesis protein compare
Atu1140 -1.0 -2.0 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu0115 -1.0 -1.1 hypothetical protein compare
Atu0972 -0.9 -3.9 lipA protein compare
Atu2802 -0.9 -4.5 precorrin-8X methylmutase compare
Atu8087 -0.9 -1.3 putative peptidoglycan binding protein compare
Atu2798 -0.9 -3.4 precorrin-6y methyltransferase compare
Atu0598 -0.8 -3.9 phosphogluconate dehydratase compare
Atu0361 -0.8 -1.9 transcriptional regulator compare
Atu1127 -0.8 -2.4 molybdopterin converting factor small subunit compare
Atu0038 -0.8 -3.2 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu1845 -0.8 -3.1 phosphoribosylformylglycinamidine synthase I compare
Atu2809 -0.8 -5.0 cobalamin biosynthesis protein compare
Atu3678 -0.8 -2.9 siderophore biosynthesis protein compare
Atu1646 -0.8 -3.6 ABC transporter, nucleotide binding/ATPase protein compare
Atu2640 -0.8 -2.6 hypothetical protein compare
Atu0894 -0.8 -2.0 ABC transporter, membrane spanning protein compare
Atu4075 -0.8 -5.5 glycogen synthase compare
Atu2793 -0.8 -2.6 cobyrinic acid a,c-diamide synthase compare
Atu1850 -0.8 -2.1 phosphoribosylformylglycinamidine synthetase II compare
Atu2057 -0.8 -1.8 DNA helicase II compare
Atu0401 -0.8 -3.2 fructokinase compare
Atu2650 -0.7 -4.7 glycerol-3-phosphate dehydrogenase compare
Atu0062 -0.7 -3.9 transcriptional regulator, ROK family compare
Atu0647 -0.7 -3.3 phosphoribosylamine--glycine ligase compare
Atu2807 -0.7 -2.3 cob(I)alamin adenosyltransferase compare
Atu4317 -0.7 -2.0 TetR family transcriptional regulator compare
Atu8094 -0.7 -2.1 hypothetical protein compare
Atu1141 -0.7 -4.4 Phosphoribosylglycinamide synthetase compare
Atu6098 -0.7 -0.6 transcriptional regulator, HTH family compare
Atu3755 -0.7 -2.9 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu1021 -0.7 -1.4 outer membrane protein compare
Atu1163 -0.7 -1.5 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu3668 -0.7 -1.8 siderophore biosynthesis protein compare
Atu0876 -0.7 -1.4 superoxide dismutase compare
Atu2554 -0.7 -1.5 lysyl-tRNA synthetase compare
Atu3707 -0.7 -1.6 phosphoserine aminotransferase compare
Atu2804 -0.6 -4.6 cobaltochelatase subunit compare
Atu3486 -0.6 -2.3 DeoR family transcriptional regulator compare
Atu1149 -0.6 -1.2 adenylate cyclase compare
Atu2344 -0.6 -1.8 lactoylglutathione lyase compare
Atu4890 -0.6 -1.4 IS426 transposase compare
Atu4616 -0.6 -0.9 dTDP-4-dehydrorhamnose reductase compare
Atu4217 -0.6 -1.0 TetR family transcriptional regulator compare
Atu1844 -0.6 -1.4 Phosphoribosylformylglycinamidine synthetase compare
Atu0977 -0.6 -3.3 serine protease DO-like protease compare
Atu3006 -0.6 -3.0 hypothetical protein compare
Atu4882 -0.6 -2.1 hypothetical protein compare
Atu3706 -0.6 -3.4 D-3-phosphoglycerate dehydrogenase compare
Atu3598 -0.6 -1.1 thiol:disulfide interchange protein compare
Atu1344 -0.6 -1.2 hypothetical protein compare
Atu5485 -0.6 -1.8 hypothetical protein compare
Atu3429 -0.6 -1.2 hypothetical protein compare
Atu3017 -0.6 -1.0 phosphoglyceromutase compare
Atu8099 -0.6 -1.6 hypothetical protein compare
Atu1354 -0.6 -0.8 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu0477 -0.6 -1.4 hypothetical protein compare
Atu2799 -0.6 -2.2 precorrin-6x reductase compare
Atu1677 -0.6 -2.4 queuine tRNA-ribosyltransferase compare
Atu3593 -0.6 -3.3 hypothetical protein compare
Atu3013 -0.6 -3.1 hypothetical protein compare
Atu2163 -0.6 -1.0 hypothetical protein compare
Atu2125 -0.6 -1.2 ABC transporter, nucleotide binding/ATPase protein compare
Atu2073 -0.6 -2.2 membrane protein compare
Atu2036 -0.5 -4.1 acetolactate synthase III, large subunit compare
Atu2056 -0.5 -2.1 hypothetical protein compare
Atu2808 -0.5 -3.4 cobyric acid synthase compare
Atu4471 -0.5 -3.7 ABC transporter substrate-binding protein compare
Atu2803 -0.5 -2.5 Cobalamin biosynthesis associated protein compare
Atu4108 -0.5 -3.6 ribonuclease D compare
Atu3698 -0.5 -2.0 thioredoxin compare
Atu0925 -0.5 -1.9 hypothetical protein compare
Atu2795 -0.5 -3.4 cobalamin biosynthetic protein compare
Atu5160 -0.5 -2.2 transcriptional regulator protein compare
Atu1572 -0.5 -3.2 hydrolase compare
Atu3776 -0.5 -1.3 hypothetical protein compare
Atu4407 -0.5 -0.9 periplasmic nitrate reductase, NapD protein compare
Atu1774 -0.5 -2.2 ABC transporter, substrate binding protein (peptide) compare
Atu2801 -0.5 -1.7 precorrin-2 C20 methyltransferase compare
Atu2771 -0.5 -2.7 bacterioferritin compare
Atu4502 -0.5 -3.2 cobalamin synthesis protein compare
Atu2768 -0.5 -2.0 hypothetical protein compare
Atu1351 -0.5 -1.7 hypothetical protein compare
Atu2762 -0.5 -1.8 hypothetical protein compare
Atu4617 -0.5 -3.4 dTDP-D-glucose-4,6-dehydratase compare
Atu1739 -0.5 -2.5 permease compare
Atu1447 -0.5 -1.7 two component sensor kinase compare
Atu0510 -0.5 -3.4 pH adaption potassium efflux system protein compare
Atu2821 -0.5 -2.2 transcriptional regulator, GntR family compare
Atu0141 -0.5 -0.6 cytochrome O ubiquinol oxidase subunit I compare
Atu2040 -0.5 -1.9 phosphoserine phosphatase compare
Atu0029 -0.5 -1.7 S-adenosylhomocysteine hydrolase compare
Atu4418 -0.5 -2.0 glutaryl-CoA dehydrogenase compare
Atu5470 -0.5 -0.7 hypothetical protein compare
Atu8202 -0.5 -1.8 hypothetical protein compare
Atu1125 -0.5 -1.9 ABC transporter, membrane spanning protein compare
Atu0036 -0.4 -1.1 hypothetical protein compare
Atu1075 -0.4 -2.3 amidophosphoribosyltransferase compare
Atu0048 -0.4 -3.2 hypothetical protein compare
Atu3400 -0.4 -1.3 hypothetical protein compare
Atu3847 -0.4 -2.0 hypothetical protein compare
Atu3578 -0.4 -1.7 glycerol-3-phosphate dehydrogenase compare
Atu0983 -0.4 -1.3 hypothetical protein compare
Atu2017 -0.4 -0.8 hypothetical protein compare
Atu3353 -0.4 -3.1 mannose-1-phosphate guanylyltransferase compare
Atu5142 -0.4 -1.0 hypothetical protein compare
Atu0726 -0.4 -2.7 ring hydroxylating dioxygenase, alpha-subunit compare
Atu3461 -0.4 -1.2 GntR family transcriptional regulator compare
Atu2715 -0.4 -2.3 hypothetical protein compare
Atu4470 -0.4 -2.2 iron ABC transporter ATPase compare
Atu4711 -0.4 -2.1 two component sensor kinase compare
Atu1500 -0.4 -1.4 rare lipoprotein A compare
Atu4346 -0.4 -2.3 hypothetical protein compare
Atu1364 -0.4 -2.2 ATP-dependent Clp protease, ATP-binding subunit compare
Atu4373 -0.4 -2.5 LacI family transcriptional regulator compare
Atu1734 -0.4 -1.2 hypothetical protein compare
Atu0883 -0.4 -1.8 hypothetical protein compare
Atu2070 -0.4 -3.2 aminopeptidase P compare
Atu2113 -0.4 -1.4 N-acetylmuramoyl-L-alanine amidase compare
Atu5125 -0.4 -1.3 GntR family transcriptional regulator compare
Atu6156 -0.4 -1.9 virA/G regulated gene compare
Atu0025 -0.4 -0.8 hypothetical protein compare
Atu1644 -0.4 -1.7 hypothetical protein compare
Atu5043 -0.4 -1.2 hypothetical protein compare
Atu4050 -0.4 -1.0 UTP-glucose-1-phosphate uridylyltransferase compare
Atu2772 -0.4 -1.8 Invasion protein A compare
Atu8161 -0.4 -0.8 hypothetical protein compare
Atu3342 -0.4 -2.3 trehalose utilization-like protein compare
Atu5075 -0.4 -2.7 GntR family transcriptional regulator compare
Atu3667 -0.4 -1.5 aspartate alpha-decarboxylase compare
Atu4393 -0.4 -2.3 3-octaprenyl-4-hydroxybenzoate carboxy-lyase compare
Atu0300 -0.4 -1.9 methyltransferase compare
Atu2766 -0.4 -3.4 NAD-glutamate dehydrogenase compare
Atu4894 -0.4 -2.5 transposase compare
Atu2382 -0.4 -1.5 hypothetical protein compare
Atu2083 -0.4 -1.2 DNA repair protein RecN compare
Atu1581 -0.4 -1.2 hypothetical protein compare
Atu5186 -0.4 -1.1 hypothetical protein compare
Atu2615 -0.4 -2.7 hypothetical protein compare
Atu3019 -0.4 -2.6 hypothetical protein compare
Atu1464 -0.4 -1.9 glycine cleavage system T protein, aminomethyltransferase compare
Atu0565 -0.4 -1.7 hypothetical protein compare
Atu0453 -0.4 -2.2 hypothetical protein compare
Atu5114 -0.4 -1.5 hypothetical protein compare
Atu0768 -0.4 -2.9 cytochrome-c oxidase chain I compare
Atu4006 -0.4 -1.7 AsnC family transcriptional regulator compare
Atu1542 -0.4 -2.1 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu3030 -0.4 -2.4 hypothetical protein compare
Atu1766 -0.4 -1.5 hypothetical protein compare
Atu1777 -0.4 -1.5 hypothetical protein compare
Atu2831 -0.4 -1.8 glucose inhibited division protein A compare
Atu1647 -0.4 -2.8 ABC transporter, membrane spanning protein compare
Atu0322 -0.4 -1.8 enoyl CoA hydratase compare
Atu3014 -0.4 -0.9 hypothetical protein compare


Specific Phenotypes

For 3 genes in this experiment

For stress Rifampicin in Agrobacterium fabrum C58

For stress Rifampicin across organisms