Experiment set5IT066 for Agrobacterium fabrum C58

Compare to:

R2A with Lomefloxacin hydrochloride 0.0002 mM

200 most important genes:

  gene name fitness t score description  
Atu0269 -4.3 -6.5 exodeoxyribonuclease VII large subunit compare
Atu1874 -3.3 -3.1 RecA protein compare
Atu1077 -3.0 -5.4 DNA repair protein compare
Atu2083 -2.8 -5.4 DNA repair protein RecN compare
Atu1030 -2.6 -2.4 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0031 -2.0 -2.4 PTS system, IIA component compare
Atu1688 -1.9 -4.6 indole-3-glycerol-phosphate synthase compare
Atu0184 -1.8 -3.4 glucokinase compare
Atu0434 -1.8 -1.9 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu1891 -1.8 -4.2 cobalamin biosynthesis protein compare
Atu4217 -1.7 -3.0 TetR family transcriptional regulator compare
Atu1687 -1.7 -5.9 anthranilate phosphoribosyltransferase compare
Atu0103 -1.7 -8.2 penicillin-binding protein compare
Atu8054 -1.7 -1.2 hypothetical protein compare
Atu0399 -1.6 -3.8 dihydroorotase compare
Atu4317 -1.6 -3.8 TetR family transcriptional regulator compare
Atu2289 -1.5 -8.0 anthranilate synthase component I and II compare
Atu4773 -1.5 -2.9 two component response regulator compare
Atu1028 -1.5 -2.4 hypothetical protein compare
Atu0421 -1.4 -1.8 ABC transporter, membrane spanning protein compare
Atu0346 -1.4 -3.8 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu1542 -1.4 -5.3 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu1446 -1.4 -2.0 two component response regulator compare
Atu3469 -1.3 -2.6 phosphoglyceromutase compare
Atu2684 -1.3 -1.8 hypothetical protein compare
Atu2710 -1.3 -6.1 hypothetical protein compare
Atu1308 -1.3 -4.7 aspartate carbamoyl transferase catalytic subunit compare
Atu2073 -1.2 -3.6 membrane protein compare
Atu2728 -1.2 -4.1 beta (1-->2) glucan export ATP-binding protein compare
Atu0941 -1.2 -1.3 hypothetical protein compare
Atu0039 -1.2 -1.9 imidazoleglycerol-phosphate synthase cyclase compare
Atu3707 -1.2 -4.0 phosphoserine aminotransferase compare
Atu0912 -1.2 -1.8 Na+/H+ antiporter compare
Atu6114 -1.2 -1.9 hypothetical protein compare
Atu0189 -1.1 -3.0 ABC transporter, membrane spanning protein (peptide) compare
Atu2472 -1.1 -2.2 hypothetical protein compare
Atu0486 -1.1 -3.8 dihydroorotate dehydrogenase compare
Atu0040 -1.1 -0.8 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu4148 -1.1 -3.0 UDP-glucuronic acid epimerase compare
Atu2809 -1.1 -5.4 cobalamin biosynthesis protein compare
Atu3634 -1.1 -4.9 penicillin-binding protein dacf precursor compare
Atu1686 -1.1 -7.1 peptidyl-prolyl cis-trans isomerse D compare
Atu2796 -1.0 -3.8 precorrin-4 C11-methyltransferase compare
Atu3712 -1.0 -1.7 hypothetical protein compare
Atu0400 -1.0 -4.0 orotate phosphoribosyltransferase compare
Atu1307 -1.0 -3.1 dihydroorotase compare
Atu2585 -1.0 -2.4 hypothetical protein compare
Atu0017 -1.0 -1.2 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu2270 -1.0 -1.4 ATP-dependent Clp protease, proteolytic subunit compare
Atu2802 -0.9 -4.3 precorrin-8X methylmutase compare
Atu4711 -0.9 -4.1 two component sensor kinase compare
Atu2787 -0.9 -1.1 hypothetical protein compare
Atu4618 -0.9 -6.8 dTDP-rhamnose-3,5-epimerase compare
Atu0043 -0.9 -1.8 imidazoleglycerol-phosphate dehydratase compare
Atu3466 -0.9 -3.4 ArsR family transcriptional regulator compare
Atu2799 -0.9 -3.4 precorrin-6x reductase compare
Atu3183 -0.9 -1.0 hypothetical protein compare
Atu0976 -0.9 -1.8 cycL protein compare
Atu5125 -0.9 -3.3 GntR family transcriptional regulator compare
Atu0986 -0.9 -1.4 hypothetical protein compare
Atu0361 -0.9 -2.2 transcriptional regulator compare
Atu2807 -0.9 -3.8 cob(I)alamin adenosyltransferase compare
Atu0298 -0.9 -4.3 orotidine 5 compare
Atu1739 -0.9 -3.0 permease compare
Atu0894 -0.9 -2.7 ABC transporter, membrane spanning protein compare
Atu3353 -0.8 -6.0 mannose-1-phosphate guanylyltransferase compare
Atu4615 -0.8 -5.3 glucose-1-phosphate thymidylyltransferase compare
Atu2800 -0.8 -1.4 precorrin-3B C17-methyltransferase compare
Atu1149 -0.8 -1.3 adenylate cyclase compare
Atu2798 -0.8 -3.1 precorrin-6y methyltransferase compare
Atu1182 -0.8 -1.1 hypothetical protein compare
Atu2640 -0.8 -2.8 hypothetical protein compare
Atu4897 -0.8 -1.7 hypothetical protein compare
Atu3182 -0.8 -2.6 hypothetical protein compare
Atu2650 -0.8 -5.9 glycerol-3-phosphate dehydrogenase compare
Atu1219 -0.8 -0.9 hypothetical protein compare
Atu3598 -0.8 -1.6 thiol:disulfide interchange protein compare
Atu2804 -0.8 -5.1 cobaltochelatase subunit compare
Atu2204 -0.8 -2.0 hypothetical protein compare
Atu3593 -0.8 -4.9 hypothetical protein compare
Atu4896 -0.8 -2.1 acetyltransferase compare
Atu1566 -0.8 -1.2 hypothetical protein compare
Atu0025 -0.7 -1.8 hypothetical protein compare
Atu0598 -0.7 -3.5 phosphogluconate dehydratase compare
Atu0876 -0.7 -1.3 superoxide dismutase compare
Atu1163 -0.7 -1.6 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu4873 -0.7 -4.7 TetR family transcriptional regulator compare
Atu4075 -0.7 -4.0 glycogen synthase compare
Atu0972 -0.7 -3.2 lipA protein compare
Atu2484 -0.7 -1.4 hypothetical protein compare
Atu0230 -0.7 -1.6 hypothetical protein compare
Atu2805 -0.7 -3.2 cobalamin synthesis protein compare
Atu3017 -0.7 -1.1 phosphoglyceromutase compare
Atu0647 -0.7 -3.5 phosphoribosylamine--glycine ligase compare
Atu2801 -0.7 -2.7 precorrin-2 C20 methyltransferase compare
Atu4617 -0.7 -4.3 dTDP-D-glucose-4,6-dehydratase compare
Atu2793 -0.7 -2.3 cobyrinic acid a,c-diamide synthase compare
Atu5106 -0.7 -2.3 DNA binding protein compare
Atu0540 -0.7 -1.5 hypothetical protein compare
Atu2057 -0.7 -1.7 DNA helicase II compare
Atu1588 -0.7 -4.6 homoserine dehydrogenase compare
Atu2368 -0.7 -0.8 hypothetical protein compare
Atu3730 -0.7 -1.0 hypothetical protein compare
Atu0062 -0.7 -4.2 transcriptional regulator, ROK family compare
Atu0401 -0.6 -2.9 fructokinase compare
Atu2591 -0.6 -3.1 glucosyltransferase compare
Atu2183 -0.6 -4.1 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu4613 -0.6 -4.4 glycosyltransferase compare
Atu1021 -0.6 -2.2 outer membrane protein compare
Atu1701 -0.6 -1.1 protein-L-isoaspartate O-methyltransferase compare
Atu8087 -0.6 -0.7 putative peptidoglycan binding protein compare
Atu0422 -0.6 -1.4 ABC transporter, membrane spanning protein compare
Atu4108 -0.6 -3.6 ribonuclease D compare
Atu2582 -0.6 -3.0 UDP-glucose/GDP-mannose dehydrogenase compare
Atu4567 -0.6 -3.2 ROK family transcriptional regulator compare
Atu1468 -0.6 -3.2 hypothetical protein compare
Atu8202 -0.6 -2.5 hypothetical protein compare
Atu2584 -0.6 -2.2 hypothetical protein compare
Atu2592 -0.6 -2.4 hypothetical protein compare
Atu4614 -0.6 -3.8 glycosyltransferase compare
Atu3755 -0.6 -2.4 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu0086 -0.6 -0.6 ribosome-binding factor A compare
Atu2036 -0.6 -4.1 acetolactate synthase III, large subunit compare
Atu3311 -0.6 -5.3 phosphomannose isomerase compare
Atu2040 -0.6 -2.5 phosphoserine phosphatase compare
Atu1780 -0.6 -3.7 ATP-dependent DNA helicase compare
Atu2113 -0.6 -1.2 N-acetylmuramoyl-L-alanine amidase compare
Atu2808 -0.6 -3.0 cobyric acid synthase compare
Atu2590 -0.6 -2.4 hypothetical protein compare
Atu4166 -0.6 -1.4 UDP-glucose 4-epimerase compare
Atu2238 -0.6 -3.4 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu4418 -0.6 -2.4 glutaryl-CoA dehydrogenase compare
Atu1110 -0.6 -1.2 cytosol aminopeptidase compare
Atu2286 -0.6 -1.0 hypothetical protein compare
Atu8118 -0.6 -2.3 putative universal stress protein compare
Atu3480 -0.6 -3.4 hydroxymethylglutaryl-CoA lyase compare
Atu3668 -0.5 -1.2 siderophore biosynthesis protein compare
Atu2017 -0.5 -0.8 hypothetical protein compare
Atu2583 -0.5 -3.8 glycosyltransferase compare
Atu0185 -0.5 -1.7 methylglyoxal synthase compare
Atu2237 -0.5 -2.6 cytochrome c1 compare
Atu0973 -0.5 -3.0 cycH protein compare
Atu3482 -0.5 -3.9 pantoate--beta-alanine ligase compare
Atu0300 -0.5 -2.2 methyltransferase compare
Atu1850 -0.5 -2.0 phosphoribosylformylglycinamidine synthetase II compare
Atu1529 -0.5 -2.5 nitrogen fixation protein FixH compare
Atu1447 -0.5 -2.1 two component sensor kinase compare
Atu1952 -0.5 -1.2 hypothetical protein compare
Atu4213 -0.5 -2.1 hypothetical protein compare
Atu6195 -0.5 -1.7 conserved hypothetical protein compare
Atu0026 -0.5 -0.6 hypothetical protein compare
Atu8190 -0.5 -2.0 hypothetical protein compare
Atu8161 -0.5 -1.2 hypothetical protein compare
Atu0029 -0.5 -2.8 S-adenosylhomocysteine hydrolase compare
Atu2207 -0.5 -1.4 two component sensor kinase compare
Atu0331 -0.5 -1.2 sigma-54 modulation protein compare
Atu4149 -0.5 -3.3 UDP-glucose 6-dehydrogenase compare
Atu0501 -0.5 -3.5 acyl-CoA dehydrogenase compare
Atu0431 -0.5 -1.0 apaG protein compare
Atu2577 -0.5 -4.2 ABC transporter, nucleotide binding/ATPase protein compare
Atu3763 -0.5 -0.9 hypothetical protein compare
Atu1056 -0.5 -2.7 hypothetical protein compare
Atu4893 -0.5 -2.5 hypothetical protein compare
Atu0048 -0.5 -3.9 hypothetical protein compare
Atu4306 -0.5 -1.9 two component response regulator compare
Atu5075 -0.5 -2.9 GntR family transcriptional regulator compare
Atu0205 -0.5 -3.4 methylmalonate-semialdehyde dehydrogenase compare
Atu3518 -0.5 -3.2 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
Atu1140 -0.5 -2.2 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu1844 -0.5 -1.0 Phosphoribosylformylglycinamidine synthetase compare
Atu3483 -0.5 -1.8 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu2205 -0.5 -2.4 transcriptional regulator, MarR family compare
Atu2052 -0.5 -2.5 hypothetical protein compare
Atu3486 -0.5 -0.9 DeoR family transcriptional regulator compare
Atu3579 -0.5 -1.2 lactoylglutathione lyase compare
Atu0893 -0.5 -2.5 ABC transporter, nucleotide binding/ATPase protein compare
Atu1846 -0.5 -0.8 hypothetical protein compare
Atu1355 -0.5 -2.7 hypothetical protein compare
Atu4616 -0.5 -0.6 dTDP-4-dehydrorhamnose reductase compare
Atu4852 -0.5 -1.8 hypothetical protein compare
Atu1782 -0.5 -1.9 hypothetical protein compare
Atu1810 -0.5 -0.9 hypothetical protein compare
Atu3485 -0.5 -3.2 short chain dehydrogenase compare
Atu1620 -0.5 -2.9 triosephosphate isomerase compare
Atu1480 -0.5 -1.6 hypothetical protein compare
Atu1189 -0.5 -0.9 hypothetical protein compare
Atu1141 -0.4 -1.7 Phosphoribosylglycinamide synthetase compare
Atu2620 -0.4 -0.8 hypothetical protein compare
Atu4153 -0.4 -2.4 aldehyde dehydrogenase compare
Atu3667 -0.4 -1.4 aspartate alpha-decarboxylase compare
Atu1714 -0.4 -1.0 exonuclease III compare
Atu3496 -0.4 -1.1 hypothetical protein compare
Atu3706 -0.4 -2.8 D-3-phosphoglycerate dehydrogenase compare
Atu2821 -0.4 -2.0 transcriptional regulator, GntR family compare
Atu3912 -0.4 -2.4 hypothetical protein compare
Atu2352 -0.4 -1.2 hypothetical protein compare
Atu1483 -0.4 -2.2 cytochrome b561 compare
Atu1694 -0.4 -1.5 hypothetical protein compare
Atu0726 -0.4 -2.7 ring hydroxylating dioxygenase, alpha-subunit compare
Atu1190 -0.4 -2.4 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in stress experiments

For stress Lomefloxacin hydrochloride across organisms