Experiment set5IT063 for Agrobacterium fabrum C58

Compare to:

R2A with Fusidic acid sodium salt 0.002 mM

200 most important genes:

  gene name fitness t score description  
Atu4217 -3.3 -1.8 TetR family transcriptional regulator compare
Atu3469 -2.6 -3.6 phosphoglyceromutase compare
Atu2710 -2.3 -10.1 hypothetical protein compare
Atu0346 -2.0 -2.7 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu0399 -2.0 -6.8 dihydroorotase compare
Atu0103 -1.9 -8.8 penicillin-binding protein compare
Atu1307 -1.8 -3.4 dihydroorotase compare
Atu2289 -1.8 -10.3 anthranilate synthase component I and II compare
Atu0434 -1.7 -2.1 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu0298 -1.7 -6.2 orotidine 5 compare
Atu2728 -1.7 -4.4 beta (1-->2) glucan export ATP-binding protein compare
Atu0486 -1.6 -5.8 dihydroorotate dehydrogenase compare
Atu1687 -1.6 -5.7 anthranilate phosphoribosyltransferase compare
Atu1308 -1.6 -5.3 aspartate carbamoyl transferase catalytic subunit compare
Atu1688 -1.6 -3.5 indole-3-glycerol-phosphate synthase compare
Atu1028 -1.6 -3.7 hypothetical protein compare
Atu2207 -1.5 -3.0 two component sensor kinase compare
Atu4317 -1.5 -2.8 TetR family transcriptional regulator compare
Atu1446 -1.4 -2.4 two component response regulator compare
Atu3750 -1.4 -3.1 thiamine-phosphate pyrophosphorylase compare
Atu0400 -1.4 -3.1 orotate phosphoribosyltransferase compare
Atu3712 -1.4 -1.9 hypothetical protein compare
Atu4451 -1.3 -8.6 mannitol 2-dehydrogenase compare
Atu1163 -1.3 -2.4 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu0723 -1.3 -1.8 FAD dependent oxidoreductase compare
Atu3008 -1.3 -1.4 hypothetical protein compare
Atu0777 -1.3 -1.3 hypothetical protein compare
Atu0043 -1.3 -2.0 imidazoleglycerol-phosphate dehydratase compare
Atu6165 -1.2 -1.1 hypothetical protein compare
Atu0421 -1.2 -1.6 ABC transporter, membrane spanning protein compare
Atu0972 -1.2 -4.8 lipA protein compare
Atu0647 -1.2 -5.2 phosphoribosylamine--glycine ligase compare
Atu1542 -1.1 -4.7 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu0184 -1.1 -2.2 glucokinase compare
Atu4773 -1.1 -1.9 two component response regulator compare
Atu2801 -1.1 -3.6 precorrin-2 C20 methyltransferase compare
Atu3739 -1.1 -2.7 phosphoglycerate kinase compare
Atu2796 -1.1 -5.0 precorrin-4 C11-methyltransferase compare
Atu0086 -1.0 -0.9 ribosome-binding factor A compare
Atu1359 -1.0 -1.3 dnaK deletion suppressor protein compare
Atu0017 -1.0 -1.6 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu0188 -1.0 -3.3 ABC transporter, membrane spanning protein (peptide) compare
Atu1588 -1.0 -6.4 homoserine dehydrogenase compare
Atu3754 -1.0 -5.5 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu2808 -1.0 -5.5 cobyric acid synthase compare
Atu1686 -1.0 -5.6 peptidyl-prolyl cis-trans isomerse D compare
Atu2804 -0.9 -5.8 cobaltochelatase subunit compare
Atu3009 -0.9 -1.0 exopolysaccharide production protein compare
Atu3763 -0.9 -1.1 hypothetical protein compare
Atu2205 -0.9 -2.6 transcriptional regulator, MarR family compare
Atu0031 -0.9 -1.5 PTS system, IIA component compare
Atu4072 -0.9 -1.4 nodulation protein N compare
Atu0976 -0.9 -1.5 cycL protein compare
Atu2809 -0.9 -5.6 cobalamin biosynthesis protein compare
Atu0280 -0.9 -2.3 hypothetical protein compare
Atu3593 -0.9 -5.7 hypothetical protein compare
Atu3755 -0.9 -3.7 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu0185 -0.9 -3.7 methylglyoxal synthase compare
Atu2125 -0.9 -1.9 ABC transporter, nucleotide binding/ATPase protein compare
Atu2802 -0.8 -5.0 precorrin-8X methylmutase compare
Atu1634 -0.8 -1.8 hypothetical protein compare
Atu1844 -0.8 -1.5 Phosphoribosylformylglycinamidine synthetase compare
Atu3429 -0.8 -1.5 hypothetical protein compare
Atu8087 -0.8 -1.2 putative peptidoglycan binding protein compare
Atu1810 -0.8 -1.2 hypothetical protein compare
Atu6189 -0.8 -1.1 protein secretion chaperone compare
Atu3634 -0.8 -3.4 penicillin-binding protein dacf precursor compare
Atu5115 -0.8 -1.6 hypothetical protein compare
Atu2640 -0.8 -3.6 hypothetical protein compare
Atu0029 -0.8 -2.5 S-adenosylhomocysteine hydrolase compare
Atu4897 -0.8 -1.7 hypothetical protein compare
Atu2800 -0.8 -2.6 precorrin-3B C17-methyltransferase compare
Atu1355 -0.8 -3.9 hypothetical protein compare
Atu3353 -0.8 -5.4 mannose-1-phosphate guanylyltransferase compare
Atu1325 -0.8 -2.1 acetyltransferase compare
Atu0606 -0.8 -1.1 hypothetical protein compare
Atu2805 -0.8 -3.1 cobalamin synthesis protein compare
Atu8190 -0.8 -3.4 hypothetical protein compare
Atu2798 -0.7 -3.1 precorrin-6y methyltransferase compare
Atu3014 -0.7 -1.8 hypothetical protein compare
Atu4792 -0.7 -1.7 hypothetical protein compare
Atu3160 -0.7 -2.3 hypothetical protein compare
Atu0361 -0.7 -2.5 transcriptional regulator compare
Atu2183 -0.7 -3.6 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu8012 -0.7 -1.5 hypothetical protein compare
Atu1850 -0.7 -1.9 phosphoribosylformylglycinamidine synthetase II compare
Atu1535 -0.7 -2.1 cytochrome c oxidase, FixQ chain compare
Atu1260 -0.7 -1.4 hypothetical protein compare
Atu0220 -0.7 -3.5 components of type IV pilus compare
Atu1855 -0.7 -4.0 MFS permease conserved
Atu3311 -0.7 -5.8 phosphomannose isomerase compare
Atu0726 -0.7 -4.2 ring hydroxylating dioxygenase, alpha-subunit compare
Atu1327 -0.7 -1.8 NADH-ubiquinone oxidoreductase compare
Atu2073 -0.7 -1.9 membrane protein compare
Atu1646 -0.7 -2.8 ABC transporter, nucleotide binding/ATPase protein compare
Atu2650 -0.7 -4.4 glycerol-3-phosphate dehydrogenase compare
Atu5513 -0.7 -1.5 cold shock protein compare
Atu2616 -0.7 -4.1 hypothetical protein compare
Atu1141 -0.6 -3.8 Phosphoribosylglycinamide synthetase compare
Atu1285 -0.6 -3.3 metal dependent hydrolase compare
Atu2057 -0.6 -1.5 DNA helicase II compare
Atu2803 -0.6 -1.7 Cobalamin biosynthesis associated protein compare
Atu0762 -0.6 -1.9 hypothetical protein compare
Atu2807 -0.6 -2.6 cob(I)alamin adenosyltransferase compare
Atu1354 -0.6 -0.7 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu3775 -0.6 -1.2 hypothetical protein compare
Atu8138 -0.6 -1.1 hypothetical protein compare
Atu3598 -0.6 -1.4 thiol:disulfide interchange protein compare
Atu1891 -0.6 -1.9 cobalamin biosynthesis protein compare
Atu4881 -0.6 -2.7 hypothetical protein compare
Atu4075 -0.6 -2.9 glycogen synthase compare
Atu0401 -0.6 -3.3 fructokinase compare
Atu2793 -0.6 -1.9 cobyrinic acid a,c-diamide synthase compare
Atu3083 -0.6 -2.2 hypothetical protein compare
Atu1760 -0.6 -1.0 hypothetical protein compare
Atu1874 -0.6 -1.1 RecA protein compare
Atu4614 -0.6 -3.7 glycosyltransferase compare
Atu0038 -0.6 -2.2 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu4873 -0.6 -4.0 TetR family transcriptional regulator compare
Atu2464 -0.6 -2.0 formyltetrahydrofolate deformylase compare
Atu3006 -0.6 -2.2 hypothetical protein compare
Atu1774 -0.6 -3.0 ABC transporter, substrate binding protein (peptide) compare
Atu0142 -0.6 -1.2 cytochrome o ubiquinol oxidase subunit II compare
Atu4878 -0.6 -2.5 hypothetical protein compare
Atu1500 -0.6 -2.4 rare lipoprotein A compare
Atu3864 -0.6 -2.0 hypothetical protein compare
Atu2040 -0.6 -2.0 phosphoserine phosphatase compare
Atu0319 -0.6 -0.9 ubiquinone biosynthesis protein compare
Atu2795 -0.6 -2.8 cobalamin biosynthetic protein compare
Atu0510 -0.6 -3.8 pH adaption potassium efflux system protein compare
Atu0971 -0.6 -1.8 two component sensor kinase compare
Atu5160 -0.6 -1.7 transcriptional regulator protein compare
Atu4346 -0.6 -1.8 hypothetical protein compare
Atu4418 -0.6 -2.9 glutaryl-CoA dehydrogenase compare
Atu2124 -0.5 -2.0 transcriptional regulator, ArsR family compare
Atu2083 -0.5 -1.8 DNA repair protein RecN compare
Atu1077 -0.5 -1.5 DNA repair protein compare
Atu1983 -0.5 -1.8 hypothetical protein compare
Atu2379 -0.5 -4.0 phosphomannomutase compare
Atu0630 -0.5 -1.0 hypothetical protein compare
Atu2578 -0.5 -3.0 cAMP-dependent protein kinase regulatory subunit compare
Atu0769 -0.5 -1.2 protoheme IX farnesyltransferase compare
Atu4166 -0.5 -1.3 UDP-glucose 4-epimerase compare
Atu2615 -0.5 -3.5 hypothetical protein compare
Atu1439 -0.5 -1.1 hypothetical protein compare
Atu2452 -0.5 -1.5 hypothetical protein compare
Atu0687 -0.5 -1.2 hypothetical protein compare
Atu0295 -0.5 -1.5 hypothetical protein compare
Atu2787 -0.5 -0.6 hypothetical protein compare
Atu1685 -0.5 -0.6 hypothetical protein compare
Atu1021 -0.5 -1.6 outer membrane protein compare
Atu2036 -0.5 -3.8 acetolactate synthase III, large subunit compare
Atu2127 -0.5 -3.2 L-carnitine dehydratase compare
Atu3485 -0.5 -3.2 short chain dehydrogenase compare
Atu2436 -0.5 -2.0 hypothetical protein compare
Atu0464 -0.5 -3.0 hypothetical protein compare
Atu1645 -0.5 -3.4 ABC transporter, substrate binding protein compare
Atu0422 -0.5 -0.7 ABC transporter, membrane spanning protein compare
Atu4618 -0.5 -3.9 dTDP-rhamnose-3,5-epimerase compare
Atu0837 -0.5 -2.0 transcriptional regulator, MarR family compare
Atu8115 -0.5 -3.4 Hypothetical Protein compare
Atu5464 -0.5 -3.2 IclR family transcriptional regulator compare
Atu2140 -0.5 -1.4 hypothetical protein compare
Atu1570 -0.5 -0.7 hypothetical protein compare
Atu1447 -0.5 -1.9 two component sensor kinase compare
Atu4108 -0.5 -2.3 ribonuclease D compare
Atu0947 -0.5 -1.8 transcriptional regulator, AsnC family compare
Atu0535 -0.5 -2.2 hypothetical protein compare
Atu3032 -0.5 -2.2 hypothetical protein compare
Atu1647 -0.5 -2.7 ABC transporter, membrane spanning protein compare
Atu1620 -0.5 -3.4 triosephosphate isomerase compare
Atu4617 -0.5 -3.0 dTDP-D-glucose-4,6-dehydratase compare
Atu1075 -0.5 -2.3 amidophosphoribosyltransferase compare
Atu8118 -0.5 -2.0 putative universal stress protein compare
Atu8018 -0.5 -0.6 hypothetical protein compare
Atu1351 -0.5 -2.3 hypothetical protein compare
Atu0062 -0.5 -2.4 transcriptional regulator, ROK family compare
Atu4685 -0.5 -2.8 LacI family transcriptional regulator compare
Atu3521 -0.5 -1.6 permease compare
Atu1103 -0.5 -1.1 rRNA-adenine N6,N6-dimethyltransferase compare
Atu4148 -0.5 -1.9 UDP-glucuronic acid epimerase compare
Atu2554 -0.4 -1.1 lysyl-tRNA synthetase compare
Atu1573 -0.4 -1.0 hypothetical protein compare
Atu3466 -0.4 -1.7 ArsR family transcriptional regulator compare
Atu5485 -0.4 -1.4 hypothetical protein compare
Atu0105 -0.4 -1.1 hypothetical protein compare
Atu2116 -0.4 -1.4 hypothetical protein compare
Atu1518 -0.4 -2.2 transcriptional regulator, Fur family compare
Atu4894 -0.4 -2.6 transposase compare
Atu0470 -0.4 -1.1 hypothetical protein compare
Atu3264 -0.4 -1.9 IclR family transcriptional regulator compare
Atu2766 -0.4 -3.9 NAD-glutamate dehydrogenase compare
Atu1589 -0.4 -2.8 aminotransferase, class I compare
Atu2794 -0.4 -1.4 uroporphyrin-III C-methyltransferase compare
Atu8055 -0.4 -1.4 hypothetical protein compare
Atu8184 -0.4 -2.0 hypothetical protein compare
Atu0276 -0.4 -1.8 hypothetical protein compare
Atu8157 -0.4 -2.5 hypothetical protein compare
Atu4615 -0.4 -2.8 glucose-1-phosphate thymidylyltransferase compare
Atu0973 -0.4 -2.4 cycH protein compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in stress experiments

For stress Fusidic acid sodium salt across organisms