Experiment set5IT058 for Agrobacterium fabrum C58

Compare to:

R2A with Polymyxin B sulfate 0.00075 mM

200 most important genes:

  gene name fitness t score description  
Atu3311 -9.5 -14.5 phosphomannose isomerase compare
Atu4613 -8.1 -15.5 glycosyltransferase compare
Atu4615 -7.7 -10.6 glucose-1-phosphate thymidylyltransferase compare
Atu4618 -7.5 -13.5 dTDP-rhamnose-3,5-epimerase compare
Atu4617 -7.3 -11.1 dTDP-D-glucose-4,6-dehydratase compare
Atu3353 -7.2 -14.3 mannose-1-phosphate guanylyltransferase compare
Atu2379 -7.0 -11.7 phosphomannomutase compare
Atu2183 -6.7 -9.6 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu4616 -6.2 -3.5 dTDP-4-dehydrorhamnose reductase compare
Atu1131 -6.2 -11.9 outer membrane protein compare
Atu4614 -5.9 -9.2 glycosyltransferase compare
Atu3763 -5.7 -3.8 hypothetical protein compare
Atu0971 -5.1 -6.0 two component sensor kinase compare
Atu1030 -5.0 -2.9 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu4773 -4.2 -2.8 two component response regulator compare
Atu4166 -4.1 -3.2 UDP-glucose 4-epimerase compare
Atu4609 -4.1 -15.2 glycosyltransferase compare
Atu2728 -4.1 -8.3 beta (1-->2) glucan export ATP-binding protein compare
Atu0434 -4.0 -4.1 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu1810 -4.0 -1.8 hypothetical protein compare
Atu4608 -3.7 -12.8 hypothetical protein compare
Atu2113 -3.7 -3.3 N-acetylmuramoyl-L-alanine amidase compare
Atu4711 -3.6 -10.4 two component sensor kinase compare
Atu4610 -3.6 -12.3 sugar nucleotide epimerase/dehydratase compare
Atu0184 -3.3 -4.5 glucokinase compare
Atu0030 -3.1 -2.1 phosphocarrier protein HPr compare
Atu1739 -2.9 -6.4 permease compare
Atu0977 -2.9 -5.3 serine protease DO-like protease compare
Atu2614 -2.9 -8.6 hypothetical protein compare
Atu2133 -2.9 -11.1 hypothetical protein compare
Atu2684 -2.8 -2.4 hypothetical protein compare
Atu2710 -2.8 -7.0 hypothetical protein compare
Atu0040 -2.8 -1.3 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu4217 -2.7 -2.5 TetR family transcriptional regulator compare
Atu0784 -2.7 -3.7 hypothetical protein compare
Atu1446 -2.5 -3.3 two component response regulator compare
Atu0331 -2.4 -4.0 sigma-54 modulation protein compare
Atu4346 -2.4 -4.6 hypothetical protein compare
Atu1687 -2.3 -7.4 anthranilate phosphoribosyltransferase compare
Atu5125 -2.3 -6.3 GntR family transcriptional regulator compare
Atu6098 -2.3 -1.1 transcriptional regulator, HTH family compare
Atu2052 -2.3 -7.8 hypothetical protein compare
Atu3469 -2.3 -3.3 phosphoglyceromutase compare
Atu0355 -2.3 -9.7 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
Atu4317 -2.2 -4.7 TetR family transcriptional regulator compare
Atu8095 -2.2 -8.0 hypothetical protein compare
Atu0031 -2.2 -2.0 PTS system, IIA component compare
Atu0103 -2.2 -9.7 penicillin-binding protein compare
Atu3798 -2.1 -4.3 TetR family transcriptional regulator compare
Atu2554 -1.9 -2.5 lysyl-tRNA synthetase compare
Atu0039 -1.9 -2.7 imidazoleglycerol-phosphate synthase cyclase compare
Atu2722 -1.9 -7.3 porin compare
Atu0354 -1.8 -2.1 ferric uptake regulator compare
Atu3754 -1.8 -6.0 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu2616 -1.7 -8.5 hypothetical protein compare
Atu2289 -1.7 -9.3 anthranilate synthase component I and II compare
Atu3634 -1.7 -7.0 penicillin-binding protein dacf precursor compare
Atu1062 -1.7 -2.3 phosphatidylserine synthase compare
Atu0346 -1.7 -2.7 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu2615 -1.6 -7.9 hypothetical protein compare
Atu0361 -1.6 -2.3 transcriptional regulator compare
Atu4897 -1.6 -2.5 hypothetical protein compare
Atu1570 -1.6 -1.3 hypothetical protein compare
Atu0723 -1.6 -1.9 FAD dependent oxidoreductase compare
Atu2125 -1.6 -1.7 ABC transporter, nucleotide binding/ATPase protein compare
Atu3578 -1.5 -4.7 glycerol-3-phosphate dehydrogenase compare
Atu1688 -1.5 -2.4 indole-3-glycerol-phosphate synthase compare
Atu4055 -1.5 -5.7 endo-1,3-1,4-beta-glycanase compare
Atu4075 -1.5 -4.3 glycogen synthase compare
Atu1845 -1.5 -4.3 phosphoribosylformylglycinamidine synthase I compare
Atu1163 -1.4 -2.1 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu2798 -1.4 -4.7 precorrin-6y methyltransferase compare
Atu1140 -1.3 -4.8 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu0086 -1.3 -1.1 ribosome-binding factor A compare
Atu0687 -1.3 -2.1 hypothetical protein compare
Atu2274 -1.3 -5.8 cation efflux system protein compare
Atu0972 -1.3 -3.8 lipA protein compare
Atu2800 -1.3 -2.0 precorrin-3B C17-methyltransferase compare
Atu8167 -1.3 -8.1 putative transmembrane protein compare
Atu2207 -1.3 -2.2 two component sensor kinase compare
Atu0344 -1.3 -3.2 hypothetical protein compare
Atu1850 -1.3 -2.4 phosphoribosylformylglycinamidine synthetase II compare
Atu0598 -1.2 -6.3 phosphogluconate dehydratase compare
Atu3750 -1.2 -3.3 thiamine-phosphate pyrophosphorylase compare
Atu1838 -1.2 -5.7 ABC transporter, substrate binding protein (amino acid) compare
Atu0755 -1.2 -2.8 hypothetical protein compare
Atu1134 -1.2 -6.1 hypothetical protein compare
Atu1495 -1.2 -3.1 hypothetical protein compare
Atu2267 -1.2 -3.4 hypothetical protein compare
Atu0211 -1.2 -6.0 hypothetical protein compare
Atu0041 -1.2 -1.7 glutamine amidotransferase compare
Atu1077 -1.2 -2.9 DNA repair protein compare
Atu0185 -1.2 -3.7 methylglyoxal synthase compare
Atu0043 -1.2 -2.2 imidazoleglycerol-phosphate dehydratase compare
Atu3712 -1.2 -1.1 hypothetical protein compare
Atu3707 -1.2 -3.4 phosphoserine aminotransferase compare
Atu0769 -1.1 -1.2 protoheme IX farnesyltransferase compare
Atu2650 -1.1 -6.4 glycerol-3-phosphate dehydrogenase compare
Atu1075 -1.1 -4.5 amidophosphoribosyltransferase compare
Atu3572 -1.1 -5.3 transcriptional regulator compare
Atu1175 -1.1 -1.7 hypothetical protein compare
Atu1677 -1.1 -4.4 queuine tRNA-ribosyltransferase compare
Atu4223 -1.1 -1.1 sarcosine oxidase delta subunit compare
Atu2803 -1.1 -3.8 Cobalamin biosynthesis associated protein compare
Atu2796 -1.1 -5.4 precorrin-4 C11-methyltransferase compare
Atu3609 -1.1 -4.2 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
Atu3739 -1.1 -2.2 phosphoglycerate kinase compare
Atu2730 -1.0 -6.8 beta (1-->2) glucan biosynthesis protein compare
Atu0647 -1.0 -3.8 phosphoribosylamine--glycine ligase compare
Atu8087 -1.0 -1.0 putative peptidoglycan binding protein compare
Atu2799 -1.0 -3.6 precorrin-6x reductase compare
Atu1447 -1.0 -1.2 two component sensor kinase compare
Atu1844 -1.0 -2.3 Phosphoribosylformylglycinamidine synthetase compare
Atu1141 -1.0 -4.2 Phosphoribosylglycinamide synthetase compare
Atu1588 -1.0 -5.1 homoserine dehydrogenase compare
Atu2127 -1.0 -4.9 L-carnitine dehydratase compare
Atu0070 -1.0 -4.9 ribonucleoside-diphosphate reductase 2 alpha chain compare
Atu0976 -0.9 -2.8 cycL protein compare
Atu2017 -0.9 -1.2 hypothetical protein compare
Atu3593 -0.9 -4.9 hypothetical protein compare
Atu0062 -0.9 -4.2 transcriptional regulator, ROK family compare
Atu2692 -0.9 -2.1 intracellular septation protein compare
Atu0780 -0.9 -4.1 hypothetical protein compare
Atu2304 -0.9 -5.7 bacteroid development protein compare
Atu0230 -0.9 -1.6 hypothetical protein compare
Atu2606 -0.9 -4.1 transcriptional regulator, GntR family compare
Atu1307 -0.9 -3.6 dihydroorotase compare
Atu1373 -0.9 -4.3 hypothetical protein compare
Atu0401 -0.9 -2.8 fructokinase compare
Atu2804 -0.9 -6.0 cobaltochelatase subunit compare
Atu3755 -0.9 -2.4 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu0602 -0.8 -4.7 glutamine synthetase compare
Atu2805 -0.8 -3.0 cobalamin synthesis protein compare
Atu3598 -0.8 -1.0 thiol:disulfide interchange protein compare
Atu3963 -0.8 -3.9 GntR family transcriptional regulator compare
Atu1620 -0.8 -5.2 triosephosphate isomerase compare
Atu1258 -0.8 -3.8 ATP-dependent Clp protease, proteolytic subunit compare
Atu4108 -0.8 -5.2 ribonuclease D compare
Atu1103 -0.8 -1.9 rRNA-adenine N6,N6-dimethyltransferase compare
Atu0953 -0.8 -1.0 hypothetical protein compare
Atu1360 -0.8 -5.3 hypothetical protein compare
Atu1177 -0.8 -3.2 hypothetical protein compare
Atu2662 -0.8 -0.9 acetyltransferase compare
Atu4882 -0.8 -1.2 hypothetical protein compare
Atu2115 -0.8 -4.2 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu0025 -0.8 -0.8 hypothetical protein compare
Atu0101 -0.8 -3.5 cytochrome c compare
Atu1364 -0.8 -3.0 ATP-dependent Clp protease, ATP-binding subunit compare
Atu0503 -0.8 -5.5 enoyl-CoA hydratase compare
Atu2746 -0.8 -2.1 hypothetical protein compare
Atu2802 -0.8 -3.1 precorrin-8X methylmutase compare
Atu2237 -0.8 -2.4 cytochrome c1 compare
Atu1130 -0.8 -3.4 dehydrogenase compare
Atu2043 -0.8 -3.3 htrA family protein compare
Atu3999 -0.8 -1.9 dithiobiotin synthetase compare
Atu8118 -0.8 -2.4 putative universal stress protein compare
Atu3603 -0.8 -2.0 two component response regulator compare
Atu0225 -0.8 -0.8 hypothetical protein compare
Atu0050 -0.8 -3.0 two component response regulator compare
Atu4171 -0.8 -3.7 cold-shock dead-box protein A compare
Atu1439 -0.8 -1.7 hypothetical protein compare
Atu1327 -0.8 -2.5 NADH-ubiquinone oxidoreductase compare
Atu0269 -0.8 -2.8 exodeoxyribonuclease VII large subunit compare
Atu3315 -0.8 -2.3 UDP-glucose 4-epimerase compare
Atu5160 -0.8 -2.1 transcriptional regulator protein compare
Atu2809 -0.8 -4.5 cobalamin biosynthesis protein compare
Atu0726 -0.8 -5.0 ring hydroxylating dioxygenase, alpha-subunit compare
Atu8131 -0.8 -5.3 pH adaption potassium efflux system protein compare
Atu2124 -0.8 -1.9 transcriptional regulator, ArsR family compare
Atu0477 -0.7 -1.0 hypothetical protein compare
Atu2548 -0.7 -5.2 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu3001 -0.7 -2.1 hypothetical protein compare
Atu4232 -0.7 -4.2 GntR family transcriptional regulator compare
Atu3083 -0.7 -2.6 hypothetical protein compare
Atu2808 -0.7 -3.3 cobyric acid synthase compare
Atu1254 -0.7 -1.3 transcriptional regulator, ArsR family compare
Atu0894 -0.7 -1.3 ABC transporter, membrane spanning protein compare
Atu4019 -0.7 -3.0 two component response regulator compare
Atu1891 -0.7 -2.0 cobalamin biosynthesis protein compare
Atu0935 -0.7 -2.1 hypothetical protein compare
Atu4873 -0.7 -3.8 TetR family transcriptional regulator compare
Atu2795 -0.7 -3.5 cobalamin biosynthetic protein compare
Atu2753 -0.7 -3.5 ATP-dependent helicase compare
Atu0498 -0.7 -3.1 hypothetical protein compare
Atu2192 -0.7 -1.0 hypothetical protein compare
Atu8165 -0.7 -1.8 hypothetical protein compare
Atu0017 -0.7 -1.0 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu3706 -0.7 -2.7 D-3-phosphoglycerate dehydrogenase compare
Atu4502 -0.7 -3.4 cobalamin synthesis protein compare
Atu1468 -0.7 -2.7 hypothetical protein compare
Atu8099 -0.7 -1.8 hypothetical protein compare
Atu0357 -0.7 -3.0 phosphate starvation inducible protein compare
Atu1542 -0.7 -2.8 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu0507 -0.7 -2.8 potassium efflux system protein compare
Atu3835 -0.7 -2.1 hypothetical protein compare
Atu5470 -0.7 -1.2 hypothetical protein compare
Atu0205 -0.7 -4.0 methylmalonate-semialdehyde dehydrogenase compare
Atu0510 -0.7 -4.1 pH adaption potassium efflux system protein compare
Atu2766 -0.6 -5.5 NAD-glutamate dehydrogenase compare
Atu0895 -0.6 -1.8 ABC transporter, substrate binding protein compare


Specific Phenotypes

For 5 genes in this experiment

For stress Polymyxin B sulfate in Agrobacterium fabrum C58

For stress Polymyxin B sulfate across organisms