Experiment set5IT055 for Agrobacterium fabrum C58

Compare to:

R2A with Paraquat dichloride 0.75 mM

200 most important genes:

  gene name fitness t score description  
Atu0434 -3.5 -4.3 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu4317 -2.7 -2.9 TetR family transcriptional regulator compare
Atu0876 -2.5 -3.2 superoxide dismutase compare
Atu0769 -2.3 -3.5 protoheme IX farnesyltransferase compare
Atu2714 -2.3 -9.2 ABC transporter, substrate binding protein (thiamine) compare
Atu1163 -2.3 -3.1 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu2713 -2.3 -13.2 ABC transporter, membrane spanning protein (thiamine) compare
Atu0184 -2.2 -3.6 glucokinase compare
Atu0942 -2.2 -11.3 MFS permease conserved
Atu2712 -2.1 -7.1 ABC transporter, nucleotide binding/ATPase protein (thiamine) compare
Atu1446 -2.0 -3.0 two component response regulator compare
Atu4502 -1.9 -7.4 cobalamin synthesis protein compare
Atu1327 -1.9 -3.6 NADH-ubiquinone oxidoreductase compare
Atu1687 -1.7 -6.7 anthranilate phosphoribosyltransferase compare
Atu1030 -1.6 -1.7 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu2113 -1.5 -3.8 N-acetylmuramoyl-L-alanine amidase compare
Atu2057 -1.5 -3.2 DNA helicase II compare
Atu0647 -1.4 -5.3 phosphoribosylamine--glycine ligase compare
Atu4077 -1.3 -8.4 glycogen branching protein compare
Atu5142 -1.3 -2.0 hypothetical protein compare
Atu0690 -1.3 -2.5 hypothetical protein compare
Atu0768 -1.2 -6.2 cytochrome-c oxidase chain I compare
Atu4773 -1.2 -2.3 two component response regulator compare
Atu2710 -1.2 -5.8 hypothetical protein compare
Atu1503 -1.2 -1.5 hypothetical protein compare
Atu0103 -1.2 -7.7 penicillin-binding protein compare
Atu0886 -1.1 -2.0 hypothetical protein compare
Atu1354 -1.1 -1.5 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu0971 -1.1 -4.6 two component sensor kinase compare
Atu1688 -1.1 -3.7 indole-3-glycerol-phosphate synthase compare
Atu8087 -1.1 -1.5 putative peptidoglycan binding protein compare
Atu0031 -1.1 -1.7 PTS system, IIA component compare
Atu1103 -1.1 -3.1 rRNA-adenine N6,N6-dimethyltransferase compare
Atu0972 -1.1 -3.3 lipA protein compare
Atu0017 -1.1 -1.7 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu4205 -1.0 -6.7 TetR family transcriptional regulator compare
Atu0723 -1.0 -1.6 FAD dependent oxidoreductase compare
Atu0298 -1.0 -4.9 orotidine 5 compare
Atu2349 -1.0 -2.2 hypothetical protein compare
Atu3915 -1.0 -2.5 MerR family transcriptional regulator compare
Atu4501 -1.0 -5.9 hypothetical protein compare
Atu3012 -1.0 -2.0 hypothetical protein compare
Atu3754 -1.0 -5.8 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu1141 -1.0 -4.2 Phosphoribosylglycinamide synthetase compare
Atu0029 -0.9 -4.3 S-adenosylhomocysteine hydrolase compare
Atu1850 -0.9 -2.9 phosphoribosylformylglycinamidine synthetase II compare
Atu3707 -0.9 -2.9 phosphoserine aminotransferase compare
Atu1694 -0.9 -3.3 hypothetical protein compare
Atu0025 -0.9 -1.3 hypothetical protein compare
Atu1307 -0.9 -3.6 dihydroorotase compare
Atu4346 -0.9 -3.0 hypothetical protein compare
Atu0689 -0.9 -7.1 ribosomal large subunit pseudouridine synthase B compare
Atu0361 -0.9 -1.7 transcriptional regulator compare
Atu2237 -0.9 -3.4 cytochrome c1 compare
Atu0399 -0.9 -3.6 dihydroorotase compare
Atu1075 -0.9 -4.8 amidophosphoribosyltransferase compare
Atu1526 -0.9 -5.3 6-phosphogluconate dehydrogenase, decarboxylating compare
Atu8161 -0.9 -1.9 hypothetical protein compare
Atu1028 -0.8 -2.1 hypothetical protein compare
Atu1140 -0.8 -4.0 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu1845 -0.8 -2.6 phosphoribosylformylglycinamidine synthase I compare
Atu1308 -0.8 -3.2 aspartate carbamoyl transferase catalytic subunit compare
Atu1445 -0.8 -4.3 two component sensor kinase compare
Atu0400 -0.8 -3.5 orotate phosphoribosyltransferase compare
Atu2289 -0.8 -5.8 anthranilate synthase component I and II compare
Atu1286 -0.8 -3.5 hypothetical protein compare
Atu0762 -0.8 -2.7 hypothetical protein compare
Atu0486 -0.8 -3.4 dihydroorotate dehydrogenase compare
Atu4873 -0.8 -3.4 TetR family transcriptional regulator compare
Atu1646 -0.8 -3.0 ABC transporter, nucleotide binding/ATPase protein compare
Atu0101 -0.8 -2.8 cytochrome c compare
Atu2798 -0.8 -3.1 precorrin-6y methyltransferase compare
Atu2805 -0.8 -3.6 cobalamin synthesis protein compare
Atu0846 -0.8 -2.5 transcriptional regulator, MarR family compare
Atu1242 -0.8 -4.5 cytochrome oxidase assembly factor compare
Atu2746 -0.7 -3.0 hypothetical protein compare
Atu1661 -0.7 -5.2 soluble pyridine nucleotide transhydrogenase compare
Atu2656 -0.7 -4.2 hypothetical protein compare
Atu1542 -0.7 -2.8 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu4677 -0.7 -1.3 hypothetical protein compare
Atu4217 -0.7 -1.6 TetR family transcriptional regulator compare
Atu2684 -0.7 -0.9 hypothetical protein compare
Atu2028 -0.7 -1.6 transcriptional regulator, ArsR family compare
Atu3466 -0.7 -2.3 ArsR family transcriptional regulator compare
Atu1844 -0.7 -2.3 Phosphoribosylformylglycinamidine synthetase compare
Atu4890 -0.7 -1.5 IS426 transposase compare
Atu0043 -0.7 -1.5 imidazoleglycerol-phosphate dehydratase compare
Atu3014 -0.7 -1.7 hypothetical protein compare
Atu1468 -0.7 -4.1 hypothetical protein compare
Atu1810 -0.7 -0.9 hypothetical protein compare
Atu1644 -0.7 -2.3 hypothetical protein compare
Atu2346 -0.6 -4.9 ABC transporter, membrane spanning protein (sugar) compare
Atu0346 -0.6 -2.2 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu4896 -0.6 -1.6 acetyltransferase compare
Atu2239 -0.6 -2.0 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu2052 -0.6 -3.6 hypothetical protein compare
Atu1770 -0.6 -4.3 glutamine synthetase compare
Atu2045 -0.6 -2.5 HFLK protein compare
Atu0062 -0.6 -4.3 transcriptional regulator, ROK family compare
Atu2040 -0.6 -3.0 phosphoserine phosphatase compare
Atu1339 -0.6 -2.2 ribonuclease E compare
Atu3755 -0.6 -2.8 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu0973 -0.6 -3.1 cycH protein compare
Atu3910 -0.6 -3.0 LamB/YcsF family protein compare
Atu2348 -0.6 -3.9 sugar binding protein compare
Atu0401 -0.6 -3.4 fructokinase compare
Atu2238 -0.6 -2.5 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu4078 -0.6 -4.8 glycogen phosphorylase compare
Atu3744 -0.6 -4.6 ABC transporter permease compare
Atu2116 -0.6 -2.6 hypothetical protein compare
Atu0983 -0.6 -1.7 hypothetical protein compare
Atu1750 -0.6 -1.8 phosphoribosyl c-AMP cyclohydrolase compare
Atu2555 -0.6 -1.9 L-lysine 2,3-aminomutase compare
Atu0767 -0.6 -2.6 cytochrome c oxidase subunit II compare
Atu2655 -0.6 -3.5 hypothetical protein compare
Atu0981 -0.6 -3.5 glutamate-ammonia-ligase adenylyltransferase compare
Atu0926 -0.6 -2.9 hypothetical protein compare
Atu1021 -0.5 -1.8 outer membrane protein compare
Atu1686 -0.5 -3.6 peptidyl-prolyl cis-trans isomerse D compare
Atu1056 -0.5 -2.9 hypothetical protein compare
Atu0272 -0.5 -2.9 transcriptional regulator, MarR family compare
Atu4072 -0.5 -1.2 nodulation protein N compare
Atu2044 -0.5 -2.6 HFLC protein compare
Atu1983 -0.5 -2.4 hypothetical protein compare
Atu1225 -0.5 -1.0 hypothetical protein compare
Atu4882 -0.5 -1.0 hypothetical protein compare
Atu4879 -0.5 -3.4 hypothetical protein compare
Atu3867 -0.5 -3.1 hypothetical protein compare
Atu3746 -0.5 -2.2 hypothetical protein compare
Atu2205 -0.5 -3.1 transcriptional regulator, MarR family compare
Atu1475 -0.5 -2.2 hypothetical protein compare
Atu5095 -0.5 -2.4 hypothetical protein compare
Atu4099 -0.5 -2.3 hypothetical protein compare
Atu1739 -0.5 -1.9 permease compare
Atu3835 -0.5 -2.9 hypothetical protein compare
Atu0922 -0.5 -1.4 hypothetical protein compare
Atu0153 -0.5 -2.1 transcriptional regulator, Fur family compare
Atu2796 -0.5 -2.7 precorrin-4 C11-methyltransferase compare
Atu2800 -0.5 -2.0 precorrin-3B C17-methyltransferase compare
Atu8012 -0.5 -0.6 hypothetical protein compare
Atu2176 -0.5 -2.4 hypothetical protein compare
Atu0771 -0.5 -2.8 cytochrome c oxidase subunit III compare
Atu4878 -0.5 -2.0 hypothetical protein compare
Atu3663 -0.5 -1.1 hypothetical protein compare
Atu1777 -0.5 -2.4 hypothetical protein compare
Atu2802 -0.5 -3.4 precorrin-8X methylmutase compare
Atu2073 -0.5 -2.0 membrane protein compare
Atu2788 -0.5 -2.3 citrate lyase, beta subunit compare
Atu1463 -0.5 -2.9 glycine cleavage system component H compare
Atu1588 -0.5 -3.3 homoserine dehydrogenase compare
Atu0837 -0.5 -2.5 transcriptional regulator, MarR family compare
Atu8191 -0.5 -0.7 hypothetical protein compare
Atu4711 -0.5 -1.8 two component sensor kinase compare
Atu1779 -0.5 -1.3 hypothetical protein compare
Atu1447 -0.5 -1.2 two component sensor kinase compare
Atu4458 -0.5 -2.0 hypothetical protein compare
Atu2804 -0.5 -3.4 cobaltochelatase subunit compare
Atu0932 -0.5 -2.2 hypothetical protein compare
Atu1647 -0.5 -3.0 ABC transporter, membrane spanning protein compare
Atu3517 -0.5 -2.1 acetyltransferase compare
Atu3706 -0.5 -2.7 D-3-phosphoglycerate dehydrogenase compare
Atu0897 -0.5 -3.5 protease II compare
Atu1359 -0.5 -0.7 dnaK deletion suppressor protein compare
Atu0976 -0.5 -1.5 cycL protein compare
Atu0479 -0.5 -2.2 ABC transporter, substrate binding protein (amino acid) compare
Atu3465 -0.5 -1.9 metallo-beta-lactamase superfamily protein compare
Atu0770 -0.4 -2.4 cytochrome C oxidase assembly protein compare
Atu1323 -0.4 -1.8 hypothetical protein compare
Atu1634 -0.4 -1.2 hypothetical protein compare
Atu1714 -0.4 -1.0 exonuclease III compare
Atu0947 -0.4 -2.0 transcriptional regulator, AsnC family compare
Atu2278 -0.4 -2.5 transcriptional regulator, ArsR family compare
Atu8202 -0.4 -1.5 hypothetical protein compare
Atu1398 -0.4 -1.8 ABC transporter, membrane spanning protein (amino acid) compare
Atu2617 -0.4 -2.0 chemotaxis protein compare
Atu0039 -0.4 -1.0 imidazoleglycerol-phosphate synthase cyclase compare
Atu3013 -0.4 -2.0 hypothetical protein compare
Atu1838 -0.4 -1.7 ABC transporter, substrate binding protein (amino acid) compare
Atu4342 -0.4 -1.5 hypothetical protein compare
Atu0825 -0.4 -2.7 quinone oxidoreductase compare
Atu1513 -0.4 -2.2 ABC excinuclease subunit A compare
Atu3287 -0.4 -1.7 thiamine biosynthesis associated protein compare
Atu3613 -0.4 -1.8 hypothetical protein compare
Atu1620 -0.4 -2.7 triosephosphate isomerase compare
Atu2406 -0.4 -1.0 hypothetical protein compare
Atu1470 -0.4 -0.7 Camphor resistance protein compare
Atu0861 -0.4 -1.8 hypothetical protein compare
Atu1645 -0.4 -2.5 ABC transporter, substrate binding protein compare
Atu2762 -0.4 -1.3 hypothetical protein compare
Atu4616 -0.4 -0.9 dTDP-4-dehydrorhamnose reductase compare
Atu3780 -0.4 -1.7 hypothetical protein compare
Atu1302 -0.4 -1.7 hypothetical protein compare
Atu2640 -0.4 -1.9 hypothetical protein compare
Atu3572 -0.4 -2.8 transcriptional regulator compare
Atu0488 -0.4 -0.7 hypothetical protein compare
Atu1847 -0.4 -1.1 hypothetical protein compare
Atu6149 -0.4 -2.2 hypothetical protein compare
Atu0636 -0.4 -2.6 hypothetical protein compare
Atu3121 -0.4 -0.8 cold shock protein compare
Atu1602 -0.4 -1.7 transcriptional activator, Crp family compare


Specific Phenotypes

For 4 genes in this experiment

For stress Paraquat dichloride in Agrobacterium fabrum C58

For stress Paraquat dichloride across organisms