Experiment set5IT054 for Ralstonia solanacearum PSI07

Compare to:

water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days

200 most important genes:

  gene name fitness t score description  
RPSI07_RS18470 -3.7 -2.5 4-hydroxy-tetrahydrodipicolinate synthase compare
RPSI07_RS18515 -3.2 -1.8 thiol-disulfide oxidoreductase DCC family protein compare
RPSI07_RS15985 -3.1 -4.0 class I poly(R)-hydroxyalkanoic acid synthase compare
RPSI07_RS13660 -2.6 -3.0 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH compare
RPSI07_RS07320 -2.6 -3.8 phosphogluconate dehydratase compare
RPSI07_RS22185 -2.5 -2.0 outer membrane lipoprotein LolB compare
RPSI07_RS17030 -2.4 -1.9 ribonuclease HII compare
RPSI07_RS12575 -2.3 -2.6 ATP-dependent Clp protease ATP-binding subunit ClpA compare
RPSI07_RS17280 -2.3 -2.7 lysophospholipid transporter LplT compare
RPSI07_RS12785 -2.1 -2.7 phosphoadenylyl-sulfate reductase compare
RPSI07_RS08400 -2.0 -4.2 short chain dehydrogenase compare
RPSI07_RS16745 -2.0 -2.8 muconate cycloisomerase compare
RPSI07_RS10570 -2.0 -4.0 cytochrome o ubiquinol oxidase subunit I compare
RPSI07_RS15280 -1.9 -10.6 ATP-dependent zinc metalloprotease FtsH compare
RPSI07_RS02175 -1.9 -2.0 cysteine dioxygenase compare
RPSI07_RS20320 -1.9 -2.0 tol-pal system-associated acyl-CoA thioesterase compare
RPSI07_RS12890 -1.9 -2.4 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase compare
RPSI07_RS16130 -1.8 -2.2 ATP-dependent Clp protease ATP-binding subunit ClpX compare
RPSI07_RS22630 -1.8 -5.8 D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase compare
RPSI07_RS13445 -1.7 -1.4 UTP--glucose-1-phosphate uridylyltransferase compare
RPSI07_RS21260 -1.7 -2.6 recombinase RecA compare
RPSI07_RS11690 -1.7 -3.5 hydrogen peroxide-inducible genes activator compare
RPSI07_RS00080 -1.7 -2.2 ABC transporter ATP-binding protein compare
RPSI07_RS05465 -1.7 -1.9 RidA family protein compare
RPSI07_RS22445 -1.6 -2.0 PTS fructose transporter subunit IIA compare
RPSI07_RS10510 -1.6 -6.5 cytochrome b compare
RPSI07_RS22320 -1.5 -1.5 heme A synthase compare
RPSI07_RS22920 -1.5 -2.7 helix-turn-helix domain-containing protein compare
RPSI07_RS21325 -1.4 -7.0 RNA helicase compare
RPSI07_RS22515 -1.4 -2.3 membrane protein compare
RPSI07_RS10655 -1.4 -2.3 GlsB/YeaQ/YmgE family stress response membrane protein compare
RPSI07_RS13475 -1.4 -2.6 TIGR00730 family Rossman fold protein compare
RPSI07_RS21660 -1.4 -3.3 Glu/Leu/Phe/Val dehydrogenase compare
RPSI07_RS24160 -1.4 -4.4 hypothetical protein compare
RPSI07_RS01905 -1.4 -2.4 hypothetical protein compare
RPSI07_RS21700 -1.3 -2.6 TetR/AcrR family transcriptional regulator compare
RPSI07_RS22230 -1.3 -2.8 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD compare
RPSI07_RS12030 -1.3 -2.4 metal-binding protein compare
RPSI07_RS17420 -1.3 -3.1 sulfonate ABC transporter ATP-binding protein compare
RPSI07_RS13645 -1.3 -3.0 hypothetical protein compare
RPSI07_RS04485 -1.3 -2.3 acyltransferase compare
RPSI07_RS13480 -1.2 -2.8 DNA polymerase I compare
RPSI07_RS05495 -1.2 -0.9 DUF333 domain-containing protein compare
RPSI07_RS19505 -1.2 -3.5 metalloprotease PmbA compare
RPSI07_RS10345 -1.2 -1.1 outer membrane lipid asymmetry maintenance protein MlaD compare
RPSI07_RS22410 -1.2 -1.5 2,3-diphosphoglycerate-dependent phosphoglycerate mutase compare
RPSI07_RS02445 -1.2 -1.5 hypothetical protein compare
RPSI07_RS00180 -1.2 -1.3 chemotaxis protein CheY compare
RPSI07_RS12185 -1.2 -3.3 N-acetylmuramoyl-L-alanine amidase compare
RPSI07_RS10325 -1.2 -2.7 glutamate synthase subunit beta compare
RPSI07_RS01675 -1.2 -7.4 TonB-dependent receptor compare
RPSI07_RS22340 -1.2 -5.8 cytochrome c oxidase subunit 3 compare
RPSI07_RS21370 -1.2 -1.6 NAD(P)/FAD-dependent oxidoreductase compare
RPSI07_RS09860 -1.2 -1.5 membrane protein compare
RPSI07_RS16125 -1.2 -1.7 ATP-dependent Clp protease proteolytic subunit compare
RPSI07_RS11615 -1.2 -1.1 tRNA guanosine(34) transglycosylase Tgt compare
RPSI07_RS14435 -1.2 -2.3 MaoC family dehydratase compare
RPSI07_RS06245 -1.2 -2.7 methyl-accepting chemotaxis protein compare
RPSI07_RS23415 -1.2 -0.6 nitronate monooxygenase compare
RPSI07_RS03330 -1.2 -1.8 ferredoxin family protein compare
RPSI07_RS19245 -1.1 -2.3 aspartate/tyrosine/aromatic aminotransferase compare
RPSI07_RS15970 -1.1 -2.1 RluA family pseudouridine synthase compare
RPSI07_RS16175 -1.1 -2.0 glucose-6-phosphate isomerase compare
RPSI07_RS11920 -1.1 -2.5 formimidoylglutamase compare
RPSI07_RS14980 -1.1 -1.6 (2Fe-2S)-binding protein compare
RPSI07_RS08415 -1.1 -1.8 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG compare
RPSI07_RS17870 -1.1 -1.6 amino-acid N-acetyltransferase compare
RPSI07_RS08855 -1.1 -0.9 DNA-binding protein compare
RPSI07_RS23310 -1.1 -4.8 lauroyl acyltransferase compare
RPSI07_RS19005 -1.1 -2.6 sugar dehydratase compare
RPSI07_RS16030 -1.1 -1.5 phosphoserine phosphatase SerB compare
RPSI07_RS19655 -1.1 -3.7 ADP-glyceromanno-heptose 6-epimerase compare
RPSI07_RS22725 -1.1 -1.6 response regulator compare
RPSI07_RS20860 -1.1 -2.0 chromosome partitioning protein ParB compare
RPSI07_RS20235 -1.1 -1.1 ABC transporter ATP-binding protein compare
RPSI07_RS06405 -1.0 -3.2 hypothetical protein compare
RPSI07_RS00290 -1.0 -2.2 transcriptional regulator compare
RPSI07_RS17595 -1.0 -2.7 asparaginase compare
RPSI07_RS22880 -1.0 -2.2 hydroxymethylglutaryl-CoA lyase compare
RPSI07_RS14410 -1.0 -2.1 NUDIX hydrolase compare
RPSI07_RS13545 -1.0 -2.3 GatB/YqeY domain-containing protein compare
RPSI07_RS19915 -1.0 -2.0 transcriptional regulator compare
RPSI07_RS22350 -1.0 -2.3 cytochrome c oxidase assembly protein compare
RPSI07_RS15650 -1.0 -3.0 NAD(P)-dependent oxidoreductase compare
RPSI07_RS10190 -1.0 -2.2 divalent-cation tolerance protein CutA compare
RPSI07_RS22365 -1.0 -4.6 cytochrome c oxidase subunit II compare
RPSI07_RS17170 -1.0 -2.1 arsenate reductase compare
RPSI07_RS17315 -1.0 -1.9 haloacid dehalogenase type II compare
RPSI07_RS11980 -1.0 -1.3 ABC transporter permease compare
RPSI07_RS10450 -1.0 -1.7 twin-arginine translocase subunit TatC compare
RPSI07_RS13515 -1.0 -2.5 exodeoxyribonuclease VII small subunit compare
RPSI07_RS25295 -1.0 -1.5 hypothetical protein compare
RPSI07_RS20285 -1.0 -1.3 7-cyano-7-deazaguanine synthase QueC compare
RPSI07_RS12090 -1.0 -3.4 membrane protein compare
RPSI07_RS23005 -1.0 -1.2 hypothetical protein compare
RPSI07_RS23340 -1.0 -1.4 HPP family protein compare
RPSI07_RS18205 -1.0 -2.8 recombination protein RecR compare
RPSI07_RS15260 -0.9 -1.8 transcription elongation factor GreA compare
RPSI07_RS08120 -0.9 -2.2 hydrolase compare
RPSI07_RS04135 -0.9 -1.2 arsenate reductase ArsC compare
RPSI07_RS10875 -0.9 -1.1 1-phosphofructokinase compare
RPSI07_RS23750 -0.9 -2.3 DNA-binding response regulator compare
RPSI07_RS22450 -0.9 -3.7 glutathione synthase compare
RPSI07_RS14240 -0.9 -3.8 DUF3106 domain-containing protein compare
RPSI07_RS24260 -0.9 -1.4 2,5-didehydrogluconate reductase compare
RPSI07_RS18710 -0.9 -2.3 hypothetical protein compare
RPSI07_RS02405 -0.9 -1.5 two-component sensor histidine kinase compare
RPSI07_RS21825 -0.9 -1.8 hypothetical protein compare
RPSI07_RS11130 -0.9 -2.6 hypoxanthine-guanine phosphoribosyltransferase compare
RPSI07_RS13910 -0.9 -1.3 hypothetical protein compare
RPSI07_RS23425 -0.9 -0.6 FAD-dependent oxidoreductase compare
RPSI07_RS21665 -0.9 -4.8 LysR family transcriptional regulator compare
RPSI07_RS18670 -0.9 -2.8 ankyrin repeat domain-containing protein compare
RPSI07_RS15160 -0.9 -1.4 DUF2892 domain-containing protein compare
RPSI07_RS18540 -0.9 -3.5 hypothetical protein compare
RPSI07_RS21815 -0.9 -1.0 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF compare
RPSI07_RS19075 -0.9 -1.5 Rieske (2Fe-2S) protein compare
RPSI07_RS09830 -0.9 -1.9 N-acylglucosamine 2-epimerase compare
RPSI07_RS16100 -0.9 -2.8 AcrB/AcrD/AcrF family protein compare
RPSI07_RS04700 -0.9 -1.2 DUF861 domain-containing protein compare
RPSI07_RS08295 -0.9 -1.6 ornithine cyclodeaminase compare
RPSI07_RS17475 -0.9 -1.4 molybdopterin molybdenumtransferase MoeA compare
RPSI07_RS22360 -0.9 -5.5 cytochrome c oxidase subunit I compare
RPSI07_RS10565 -0.9 -1.3 ubiquinol oxidase subunit II compare
RPSI07_RS23690 -0.8 -2.3 tyrosine recombinase XerC compare
RPSI07_RS12775 -0.8 -3.7 nitrite/sulfite reductase compare
RPSI07_RS13140 -0.8 -2.4 aldehyde dehydrogenase compare
RPSI07_RS07275 -0.8 -3.0 hypothetical protein compare
RPSI07_RS25005 -0.8 -1.8 hypothetical protein compare
RPSI07_RS14015 -0.8 -1.6 ferredoxin compare
RPSI07_RS10210 -0.8 -1.4 cytochrome c4 compare
RPSI07_RS12680 -0.8 -1.6 peptidylprolyl isomerase compare
RPSI07_RS20180 -0.8 -1.9 arylformamidase compare
RPSI07_RS10305 -0.8 -2.1 deoxyguanosinetriphosphate triphosphohydrolase compare
RPSI07_RS19375 -0.8 -1.3 hypothetical protein compare
RPSI07_RS14865 -0.8 -2.0 fumarate hydratase compare
RPSI07_RS04705 -0.8 -3.0 amidohydrolase compare
RPSI07_RS10350 -0.8 -2.2 ABC transporter compare
RPSI07_RS13380 -0.8 -3.3 3-oxoadipate enol-lactonase compare
RPSI07_RS25335 -0.8 -1.9 hypothetical protein compare
RPSI07_RS19350 -0.8 -1.2 alanyl-tRNA editing protein compare
RPSI07_RS17260 -0.8 -1.8 CoA transferase compare
RPSI07_RS13785 -0.8 -1.1 allophanate hydrolase compare
RPSI07_RS16800 -0.8 -2.4 xanthine dehydrogenase family protein subunit M compare
RPSI07_RS21935 -0.8 -2.0 beta-hydroxyacyl-acyl carrier protein (ACP)-dehydratase compare
RPSI07_RS09525 -0.8 -2.9 type II secretion system protein N compare
RPSI07_RS14660 -0.8 -1.3 GntR family transcriptional regulator compare
RPSI07_RS22060 -0.8 -4.4 MFS transporter compare
RPSI07_RS08030 -0.8 -3.5 FAD-binding oxidoreductase compare
RPSI07_RS08580 -0.8 -1.2 glycine cleavage system protein H compare
RPSI07_RS11525 -0.8 -2.7 aspartate 1-decarboxylase compare
RPSI07_RS23315 -0.8 -2.2 lauroyl acyltransferase compare
RPSI07_RS04820 -0.8 -0.7 Hpt domain-containing protein compare
RPSI07_RS10730 -0.7 -1.8 CYTH domain-containing protein compare
RPSI07_RS15990 -0.7 -2.2 acetyl-CoA C-acetyltransferase compare
RPSI07_RS13385 -0.7 -1.7 4-carboxymuconolactone decarboxylase compare
RPSI07_RS17015 -0.7 -1.4 phosphoenolpyruvate synthase compare
RPSI07_RS05105 -0.7 -1.7 endonuclease compare
RPSI07_RS02200 -0.7 -2.8 cob(I)yrinic acid a,c-diamide adenosyltransferase compare
RPSI07_RS12195 -0.7 -2.3 LysR family transcriptional regulator compare
RPSI07_RS14790 -0.7 -1.5 hypothetical protein compare
RPSI07_RS02030 -0.7 -2.8 TolC family protein compare
RPSI07_RS13845 -0.7 -2.5 serine/threonine-protein phosphatase compare
RPSI07_RS20305 -0.7 -1.4 cell envelope integrity protein TolA compare
RPSI07_RS17210 -0.7 -1.3 chitin-binding protein compare
RPSI07_RS03360 -0.7 -2.5 DUF4154 domain-containing protein compare
RPSI07_RS21110 -0.7 -2.0 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase compare
RPSI07_RS09535 -0.7 -1.9 general secretion pathway protein L compare
RPSI07_RS07315 -0.7 -5.1 glucose-6-phosphate dehydrogenase compare
RPSI07_RS17155 -0.7 -1.3 succinyldiaminopimelate transaminase compare
RPSI07_RS16095 -0.7 -1.4 efflux RND transporter periplasmic adaptor subunit compare
RPSI07_RS07470 -0.7 -3.7 RND transporter compare
RPSI07_RS03620 -0.7 -2.8 hypothetical protein compare
RPSI07_RS19650 -0.7 -0.8 competence protein ComEA compare
RPSI07_RS09025 -0.7 -1.1 hypothetical protein compare
RPSI07_RS25205 -0.7 -3.0 fucose-binding lectin protein compare
RPSI07_RS12930 -0.7 -2.9 ParA family protein compare
RPSI07_RS11905 -0.7 -2.2 histidine utilization repressor compare
RPSI07_RS14730 -0.7 -0.6 tryptophan synthase subunit beta compare
RPSI07_RS10355 -0.7 -0.4 hypothetical protein compare
RPSI07_RS14085 -0.7 -2.1 hydroxyisourate hydrolase compare
RPSI07_RS23500 -0.7 -1.6 competence protein TfoX compare
RPSI07_RS16695 -0.7 -1.1 dethiobiotin synthase compare
RPSI07_RS05460 -0.7 -1.8 D-aminoacylase compare
RPSI07_RS16250 -0.7 -2.9 DNA-binding response regulator compare
RPSI07_RS18065 -0.7 -2.9 FtsH protease activity modulator HflK compare
RPSI07_RS22250 -0.7 -3.0 amino acid transporter compare
RPSI07_RS10295 -0.7 -1.8 shikimate kinase compare
RPSI07_RS19660 -0.7 -1.1 D-glycero-beta-D-manno-heptose-7-phosphate kinase compare
RPSI07_RS24530 -0.7 -1.5 hypothetical protein compare
RPSI07_RS05490 -0.7 -4.3 glycosyltransferase family 39 protein compare
RPSI07_RS05965 -0.7 -2.2 DUF350 domain-containing protein compare
RPSI07_RS14250 -0.7 -1.7 RNA polymerase sigma factor compare
RPSI07_RS01005 -0.7 -1.1 MarR family transcriptional regulator compare
RPSI07_RS08570 -0.6 -3.3 L-serine ammonia-lyase compare
RPSI07_RS07575 -0.6 -2.7 LacI family DNA-binding transcriptional regulator compare
RPSI07_RS08310 -0.6 -1.6 copper-translocating P-type ATPase compare
RPSI07_RS09545 -0.6 -2.0 prepilin-type N-terminal cleavage/methylation domain-containing protein compare
RPSI07_RS18455 -0.6 -0.9 cupin domain-containing protein compare
RPSI07_RS15795 -0.6 -1.8 oligopeptidase A compare


Specific Phenotypes

None in this experiment

For Ralstonia solanacearum PSI07 in survival experiments

For survival Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days across organisms