Experiment set5IT054 for Ralstonia solanacearum PSI07

Compare to:

water survival rep B; Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days

200 most detrimental genes:

  gene name fitness t score description  
RPSI07_RS23775 +2.5 1.6 transmembrane anti-sigma factor compare
RPSI07_RS19630 +2.2 2.5 methionine ABC transporter ATP-binding protein compare
RPSI07_RS11590 +1.6 3.2 polyisoprenoid-binding protein compare
RPSI07_RS20605 +1.5 3.0 glucose-1-phosphate thymidylyltransferase compare
RPSI07_RS18020 +1.4 2.6 NAD-dependent deacylase compare
RPSI07_RS12335 +1.3 10.6 type II toxin-antitoxin system HipA family toxin compare
RPSI07_RS04995 +1.3 2.2 antibiotic biosynthesis monooxygenase compare
RPSI07_RS12905 +1.3 1.5 cobalamin-binding protein compare
RPSI07_RS18140 +1.3 9.0 RNA polymerase sigma factor RpoS compare
RPSI07_RS08495 +1.2 2.6 DUF3562 domain-containing protein compare
RPSI07_RS01470 +1.2 3.8 flagellar motor switch protein FliN compare
RPSI07_RS17025 +1.2 1.5 RNA methyltransferase compare
RPSI07_RS16150 +1.2 1.2 tRNA-Asp compare
RPSI07_RS16540 +1.2 1.9 hypothetical protein compare
RPSI07_RS17215 +1.2 1.1 D-aminopeptidase compare
RPSI07_RS11385 +1.1 3.4 2-dehydro-3-deoxygalactonokinase compare
RPSI07_RS04530 +1.1 8.5 hypothetical protein compare
RPSI07_RS24830 +1.1 3.0 very short patch repair endonuclease compare
RPSI07_RS15930 +1.1 1.5 potassium transporter Kup compare
RPSI07_RS18110 +1.1 1.6 type IV pilus biogenesis/stability protein PilW compare
RPSI07_RS09440 +1.0 1.3 helix-turn-helix domain-containing protein compare
RPSI07_RS05505 +1.0 2.3 DNA-binding response regulator compare
RPSI07_RS20670 +1.0 2.5 chemotaxis protein CheW compare
RPSI07_RS17995 +1.0 0.9 FAD-dependent oxidoreductase compare
RPSI07_RS07405 +1.0 6.0 helix-turn-helix transcriptional regulator compare
RPSI07_RS09115 +1.0 1.2 hypothetical protein compare
RPSI07_RS13720 +1.0 1.2 DUF1232 domain-containing protein compare
RPSI07_RS12555 +1.0 2.5 hypothetical protein compare
RPSI07_RS02520 +1.0 0.9 enoyl-CoA hydratase compare
RPSI07_RS17815 +0.9 1.4 nitrogen regulation protein NR(I) compare
RPSI07_RS24340 +0.9 2.4 hypothetical protein compare
RPSI07_RS22400 +0.9 2.1 glutaredoxin 3 compare
RPSI07_RS21235 +0.9 1.6 hypothetical protein compare
RPSI07_RS16345 +0.9 3.9 3-hydroxyacyl-CoA dehydrogenase compare
RPSI07_RS25060 +0.9 2.4 hypothetical protein compare
RPSI07_RS07395 +0.9 6.3 amino acid ABC transporter permease compare
RPSI07_RS08730 +0.9 2.6 16S rRNA (cytidine(1402)-2'-O)-methyltransferase compare
RPSI07_RS20675 +0.8 1.0 response regulator compare
RPSI07_RS13810 +0.8 2.7 pyroglutamyl-peptidase I compare
RPSI07_RS18145 +0.8 3.5 LysM peptidoglycan-binding domain-containing protein compare
RPSI07_RS23860 +0.8 1.2 DUF3617 domain-containing protein compare
RPSI07_RS14915 +0.8 2.9 baseplate assembly protein compare
RPSI07_RS05470 +0.8 1.5 permease compare
RPSI07_RS08640 +0.8 1.2 2-hydroxy-3-oxopropionate reductase compare
RPSI07_RS19215 +0.8 5.0 sugar ABC transporter ATP-binding protein compare
RPSI07_RS19720 +0.8 1.0 DUF2059 domain-containing protein compare
RPSI07_RS19460 +0.8 1.1 hypothetical protein compare
RPSI07_RS25310 +0.8 1.9 hypothetical protein compare
RPSI07_RS16085 +0.7 1.8 DUF1501 domain-containing protein compare
RPSI07_RS12065 +0.7 0.7 tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA compare
RPSI07_RS24615 +0.7 1.1 hypothetical protein compare
RPSI07_RS19440 +0.7 3.3 hypothetical protein compare
RPSI07_RS01335 +0.7 1.9 organic hydroperoxide resistance protein compare
RPSI07_RS23825 +0.7 3.4 polyhydroxybutyrate granule-associated protein (Phasin) phaP compare
RPSI07_RS24990 +0.7 1.1 hypothetical protein compare
RPSI07_RS23770 +0.7 2.0 hypothetical protein compare
RPSI07_RS18250 +0.7 2.6 DNA-binding response regulator compare
RPSI07_RS14535 +0.7 1.2 PaaI family thioesterase compare
RPSI07_RS20160 +0.7 0.6 peptide-methionine (S)-S-oxide reductase compare
RPSI07_RS13895 +0.7 2.1 hypothetical protein compare
RPSI07_RS17065 +0.7 1.6 RIP metalloprotease RseP compare
RPSI07_RS06805 +0.7 2.7 membrane protein compare
RPSI07_RS08615 +0.7 1.8 hypothetical protein compare
RPSI07_RS00135 +0.7 1.2 hypothetical protein compare
RPSI07_RS09220 +0.7 1.3 hypothetical protein compare
RPSI07_RS08735 +0.7 1.9 YraN family protein compare
RPSI07_RS22085 +0.7 2.1 adenine phosphoribosyltransferase compare
RPSI07_RS00300 +0.7 2.1 glyoxalase compare
RPSI07_RS07155 +0.7 1.7 PqqD family protein compare
RPSI07_RS19220 +0.7 2.0 ABC transporter permease compare
RPSI07_RS12235 +0.7 1.6 exodeoxyribonuclease VII large subunit compare
RPSI07_RS11595 +0.7 2.6 polyisoprenoid-binding protein compare
RPSI07_RS16535 +0.7 1.2 GALA protein compare
RPSI07_RS07400 +0.6 2.6 arginase compare
RPSI07_RS00930 +0.6 2.4 peroxiredoxin compare
RPSI07_RS13565 +0.6 1.5 MBL fold metallo-hydrolase compare
RPSI07_RS13180 +0.6 1.5 DNA mismatch repair protein MutS compare
RPSI07_RS05255 +0.6 2.1 DNA-binding response regulator compare
RPSI07_RS12000 +0.6 4.3 polynucleotide adenylyltransferase PcnB compare
RPSI07_RS06910 +0.6 2.0 hypothetical protein compare
RPSI07_RS17365 +0.6 2.0 DNA-binding response regulator compare
RPSI07_RS08705 +0.6 1.8 arsenate reductase (glutaredoxin) compare
RPSI07_RS18090 +0.6 1.6 membrane protein compare
RPSI07_RS12715 +0.6 1.1 N-acetyltransferase compare
RPSI07_RS09215 +0.6 2.6 hypothetical protein compare
RPSI07_RS21065 +0.6 1.8 amidase compare
RPSI07_RS24120 +0.6 2.5 hypothetical protein compare
RPSI07_RS13980 +0.6 1.7 hypothetical protein compare
RPSI07_RS12225 +0.6 1.1 biopolymer transporter ExbD compare
RPSI07_RS11640 +0.6 2.7 hypothetical protein compare
RPSI07_RS08830 +0.6 0.9 hypothetical protein compare
RPSI07_RS20730 +0.6 0.9 Flp family type IVb pilin compare
RPSI07_RS15680 +0.6 1.6 RidA family protein compare
RPSI07_RS19465 +0.6 1.0 ATP-dependent helicase compare
RPSI07_RS11855 +0.6 2.3 carbon-nitrogen hydrolase family protein compare
RPSI07_RS22595 +0.6 2.6 hypothetical protein compare
RPSI07_RS10275 +0.6 1.8 ferrous iron transporter B compare
RPSI07_RS24685 +0.6 1.1 hypothetical protein compare
RPSI07_RS03535 +0.6 1.3 methyl-accepting chemotaxis protein compare
RPSI07_RS22100 +0.6 3.6 potassium transporter compare
RPSI07_RS09390 +0.6 1.6 membrane protein compare
RPSI07_RS24195 +0.6 2.8 hypothetical protein compare
RPSI07_RS24185 +0.6 1.1 hypothetical protein compare
RPSI07_RS04005 +0.6 1.7 hypothetical protein compare
RPSI07_RS21150 +0.5 1.6 pyruvate kinase compare
RPSI07_RS19015 +0.5 1.9 RNA polymerase sigma factor RpoE compare
RPSI07_RS03380 +0.5 1.3 TetR family transcriptional regulator compare
RPSI07_RS23615 +0.5 0.6 thioredoxin compare
RPSI07_RS19100 +0.5 2.0 molybdenum cofactor guanylyltransferase MobA compare
RPSI07_RS09375 +0.5 3.9 DUF4123 domain-containing protein compare
RPSI07_RS16585 +0.5 2.0 lytic transglycosylase domain-containing protein compare
RPSI07_RS19815 +0.5 3.1 ABC transporter permease compare
RPSI07_RS03965 +0.5 1.3 DUF1794 domain-containing protein compare
RPSI07_RS05540 +0.5 1.4 hypothetical protein compare
RPSI07_RS01570 +0.5 1.8 N-acetyltransferase compare
RPSI07_RS09355 +0.5 2.5 XRE family transcriptional regulator compare
RPSI07_RS00500 +0.5 1.9 MbtH family protein compare
RPSI07_RS04540 +0.5 2.2 hypothetical protein compare
RPSI07_RS21930 +0.5 1.1 3-oxoacyl-ACP synthase compare
RPSI07_RS20480 +0.5 1.8 ferredoxin compare
RPSI07_RS02840 +0.5 1.8 hypothetical protein compare
RPSI07_RS11305 +0.5 1.2 monofunctional biosynthetic peptidoglycan transglycosylase compare
RPSI07_RS10555 +0.5 0.3 FecR family protein compare
RPSI07_RS14635 +0.5 0.8 hypothetical protein compare
RPSI07_RS00650 +0.5 2.0 hypothetical protein compare
RPSI07_RS07165 +0.5 2.3 hypothetical protein compare
RPSI07_RS01390 +0.5 2.1 flagellar basal body rod protein FlgB compare
RPSI07_RS17630 +0.5 1.1 tRNA dihydrouridine(20/20a) synthase DusA compare
RPSI07_RS20740 +0.5 1.5 Flp pilus assembly protein CpaB compare
RPSI07_RS24110 +0.5 1.5 hypothetical protein compare
RPSI07_RS13915 +0.5 1.6 hypothetical protein compare
RPSI07_RS00780 +0.5 1.8 MarR family transcriptional regulator compare
RPSI07_RS15315 +0.5 2.9 phosphate transport system regulatory protein PhoU compare
RPSI07_RS04645 +0.5 1.2 aldehyde dehydrogenase compare
RPSI07_RS22735 +0.5 1.9 sensor histidine kinase compare
RPSI07_RS02010 +0.5 2.6 two-component sensor histidine kinase compare
RPSI07_RS21410 +0.5 2.1 HlyC/CorC family transporter compare
RPSI07_RS25215 +0.5 1.5 hypothetical protein compare
RPSI07_RS19210 +0.5 0.5 sugar ABC transporter substrate-binding protein compare
RPSI07_RS18890 +0.5 1.5 GlsB/YeaQ/YmgE family stress response membrane protein compare
RPSI07_RS03450 +0.5 2.1 hypothetical protein compare
RPSI07_RS24335 +0.5 2.3 integrase compare
RPSI07_RS24965 +0.5 1.5 hypothetical protein compare
RPSI07_RS01290 +0.5 0.9 universal stress protein compare
RPSI07_RS14770 +0.5 2.1 nodulation protein NodJ compare
RPSI07_RS14285 +0.5 1.4 2-isopropylmalate synthase compare
RPSI07_RS05275 +0.5 1.3 glutaminase compare
RPSI07_RS18570 +0.5 0.8 alpha/beta hydrolase compare
RPSI07_RS16405 +0.5 0.9 4-hydroxybutyrate dehydrogenase compare
RPSI07_RS12300 +0.5 2.1 HD-GYP domain-containing protein compare
RPSI07_RS00460 +0.5 1.1 hypothetical protein compare
RPSI07_RS04975 +0.5 1.4 toxin-activating lysine-acyltransferase compare
RPSI07_RS08315 +0.5 1.7 Cu(I)-responsive transcriptional regulator compare
RPSI07_RS11325 +0.5 1.4 cation transporter compare
RPSI07_RS01455 +0.5 1.8 flagellar biosynthetic protein FliQ compare
RPSI07_RS14630 +0.5 1.0 bifunctional 2-methylcitrate dehydratase/aconitate hydratase compare
RPSI07_RS15185 +0.5 1.4 conjugal transfer protein TraR compare
RPSI07_RS07870 +0.5 1.4 hypothetical protein compare
RPSI07_RS11155 +0.5 1.3 sigma-54-dependent Fis family transcriptional regulator compare
RPSI07_RS01595 +0.5 1.3 hypothetical protein compare
RPSI07_RS06660 +0.5 1.4 potassium transporter Kef compare
RPSI07_RS22720 +0.5 2.5 DNA-binding response regulator compare
RPSI07_RS13235 +0.5 1.8 signal peptidase compare
RPSI07_RS01370 +0.5 1.8 DNA-binding response regulator compare
RPSI07_RS04300 +0.5 2.5 GntR family transcriptional regulator compare
RPSI07_RS15080 +0.5 0.9 integrase compare
RPSI07_RS10660 +0.5 0.9 redox-regulated ATPase YchF compare
RPSI07_RS03985 +0.5 2.8 LysR family transcriptional regulator compare
RPSI07_RS04090 +0.5 2.7 molybdopterin-synthase adenylyltransferase MoeB compare
RPSI07_RS10270 +0.5 1.3 pilus assembly protein PilM compare
RPSI07_RS11505 +0.4 2.9 class I SAM-dependent methyltransferase compare
RPSI07_RS15655 +0.4 1.4 PAS domain-containing protein compare
RPSI07_RS14480 +0.4 1.5 urease subunit beta compare
RPSI07_RS06615 +0.4 1.2 membrane protein compare
RPSI07_RS19110 +0.4 0.6 hypothetical protein compare
RPSI07_RS15980 +0.4 1.0 hypothetical protein compare
RPSI07_RS04225 +0.4 2.0 hypothetical protein compare
RPSI07_RS16740 +0.4 1.0 muconolactone delta-isomerase compare
RPSI07_RS23550 +0.4 1.4 hypothetical protein compare
RPSI07_RS16240 +0.4 1.4 ABC transporter ATP-binding protein compare
RPSI07_RS03690 +0.4 1.3 type III secretion protein HrpB7 compare
RPSI07_RS21515 +0.4 2.6 FAD-dependent oxidoreductase compare
RPSI07_RS16765 +0.4 0.9 hypothetical protein compare
RPSI07_RS19270 +0.4 0.5 malonic semialdehyde reductase compare
RPSI07_RS20445 +0.4 0.9 hypothetical protein compare
RPSI07_RS10745 +0.4 1.1 DUF1311 domain-containing protein compare
RPSI07_RS19850 +0.4 2.3 glycosyltransferase family 1 protein compare
RPSI07_RS05025 +0.4 0.7 DUF3613 domain-containing protein compare
RPSI07_RS25350 +0.4 1.8 hypothetical protein compare
RPSI07_RS22605 +0.4 1.4 ABC transporter ATP-binding protein compare
RPSI07_RS11800 +0.4 1.7 glycolate oxidase iron-sulfur subunit compare
RPSI07_RS10285 +0.4 1.0 pilus assembly protein PilP compare
RPSI07_RS00295 +0.4 1.9 GNAT family N-acetyltransferase compare
RPSI07_RS11300 +0.4 2.2 shikimate dehydrogenase compare
RPSI07_RS14545 +0.4 0.3 LysR family transcriptional regulator compare
RPSI07_RS15400 +0.4 2.1 LysR family transcriptional regulator compare
RPSI07_RS13955 +0.4 1.2 hypothetical protein compare
RPSI07_RS20115 +0.4 1.3 tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA compare
RPSI07_RS09630 +0.4 1.9 hypothetical protein compare
RPSI07_RS24150 +0.4 2.4 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Ralstonia solanacearum PSI07 in survival experiments

For survival Treatment=watercosm; Collection=outgrowth_in_CPG; Time=0_days across organisms