Experiment set5IT054 for Agrobacterium fabrum C58

Compare to:

R2A with Gentamicin sulfate salt 0.00125 mM

200 most important genes:

  gene name fitness t score description  
Atu2682 -7.0 -6.8 hypothetical protein compare
Atu2728 -5.3 -6.3 beta (1-->2) glucan export ATP-binding protein compare
Atu2294 -4.3 -8.4 aminoglycoside N6'-acetyltransferase conserved
Atu1062 -3.7 -3.2 phosphatidylserine synthase compare
Atu0971 -3.7 -5.5 two component sensor kinase compare
Atu1030 -3.6 -2.4 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0598 -3.5 -14.2 phosphogluconate dehydratase compare
Atu2295 -3.4 -8.2 alpha-glucosidase compare
Atu0103 -3.3 -9.0 penicillin-binding protein compare
Atu0031 -3.3 -2.5 PTS system, IIA component compare
Atu2242 -3.2 -16.2 ABC transporter, nucleotide binding/ATPase protein compare
Atu0399 -3.2 -8.1 dihydroorotase compare
Atu2692 -2.9 -5.5 intracellular septation protein compare
Atu0486 -2.8 -6.1 dihydroorotate dehydrogenase compare
Atu4317 -2.7 -4.1 TetR family transcriptional regulator compare
Atu2113 -2.6 -4.0 N-acetylmuramoyl-L-alanine amidase compare
Atu0400 -2.5 -3.9 orotate phosphoribosyltransferase compare
Atu0298 -2.5 -8.5 orotidine 5 compare
Atu0434 -2.4 -3.5 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu1688 -2.4 -5.0 indole-3-glycerol-phosphate synthase compare
Atu2289 -2.4 -11.8 anthranilate synthase component I and II compare
Atu3469 -2.3 -3.5 phosphoglyceromutase compare
Atu4072 -2.2 -3.2 nodulation protein N compare
Atu2044 -2.2 -8.4 HFLC protein compare
Atu2045 -2.1 -8.0 HFLK protein compare
Atu0017 -2.0 -2.7 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu3609 -2.0 -6.4 1-acyl-sn-glycerol-3-phosphate acyltransferase compare
Atu4616 -1.9 -3.0 dTDP-4-dehydrorhamnose reductase compare
Atu1163 -1.9 -2.7 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu2052 -1.9 -6.3 hypothetical protein compare
Atu2640 -1.9 -6.0 hypothetical protein compare
Atu1103 -1.8 -3.3 rRNA-adenine N6,N6-dimethyltransferase compare
Atu2710 -1.8 -7.6 hypothetical protein compare
Atu1308 -1.8 -5.7 aspartate carbamoyl transferase catalytic subunit compare
Atu1307 -1.8 -4.9 dihydroorotase compare
Atu1844 -1.7 -2.9 Phosphoribosylformylglycinamidine synthetase compare
Atu2428 -1.7 -10.1 exopolysaccharide production protein PssB compare
Atu1687 -1.7 -4.3 anthranilate phosphoribosyltransferase compare
Atu0346 -1.6 -3.3 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu3353 -1.6 -10.7 mannose-1-phosphate guanylyltransferase compare
Atu1686 -1.6 -10.8 peptidyl-prolyl cis-trans isomerse D compare
Atu0188 -1.5 -2.4 ABC transporter, membrane spanning protein (peptide) compare
Atu3754 -1.5 -5.4 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu0331 -1.5 -3.4 sigma-54 modulation protein compare
Atu0784 -1.4 -5.1 hypothetical protein compare
Atu1845 -1.4 -3.9 phosphoribosylformylglycinamidine synthase I compare
Atu1028 -1.4 -3.4 hypothetical protein compare
Atu4618 -1.3 -9.0 dTDP-rhamnose-3,5-epimerase compare
Atu4075 -1.3 -5.6 glycogen synthase compare
Atu1850 -1.3 -5.0 phosphoribosylformylglycinamidine synthetase II compare
Atu1447 -1.3 -2.0 two component sensor kinase compare
Atu4217 -1.3 -1.8 TetR family transcriptional regulator compare
Atu2207 -1.3 -4.1 two component sensor kinase compare
Atu3634 -1.3 -4.5 penicillin-binding protein dacf precursor compare
Atu2787 -1.2 -1.1 hypothetical protein compare
Atu1075 -1.2 -5.8 amidophosphoribosyltransferase compare
Atu0190 -1.2 -5.2 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu2183 -1.2 -7.0 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu0189 -1.2 -3.5 ABC transporter, membrane spanning protein (peptide) compare
Atu4615 -1.2 -7.4 glucose-1-phosphate thymidylyltransferase compare
Atu0184 -1.2 -2.3 glucokinase compare
Atu0647 -1.2 -4.0 phosphoribosylamine--glycine ligase compare
Atu1753 -1.2 -6.8 hypothetical protein compare
Atu5468 -1.2 -1.1 hypothetical protein compare
Atu1364 -1.2 -4.6 ATP-dependent Clp protease, ATP-binding subunit compare
Atu2057 -1.2 -1.9 DNA helicase II compare
Atu4614 -1.1 -6.1 glycosyltransferase compare
Atu1140 -1.1 -3.0 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu4166 -1.1 -1.0 UDP-glucose 4-epimerase compare
Atu3311 -1.1 -8.0 phosphomannose isomerase compare
Atu2730 -1.1 -7.0 beta (1-->2) glucan biosynthesis protein compare
Atu1739 -1.1 -3.7 permease compare
Atu0086 -1.0 -1.0 ribosome-binding factor A compare
Atu2662 -1.0 -1.6 acetyltransferase compare
Atu4773 -1.0 -2.2 two component response regulator compare
Atu3755 -1.0 -3.7 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu2040 -1.0 -4.4 phosphoserine phosphatase compare
Atu4617 -1.0 -6.4 dTDP-D-glucose-4,6-dehydratase compare
Atu8087 -1.0 -1.1 putative peptidoglycan binding protein compare
Atu4613 -1.0 -7.3 glycosyltransferase compare
Atu0044 -0.9 -5.1 heat shock protein hslV compare
Atu1359 -0.9 -1.2 dnaK deletion suppressor protein compare
Atu0185 -0.9 -5.4 methylglyoxal synthase compare
Atu1677 -0.9 -3.1 queuine tRNA-ribosyltransferase compare
Atu1141 -0.9 -4.4 Phosphoribosylglycinamide synthetase compare
Atu3485 -0.9 -5.0 short chain dehydrogenase compare
Atu3727 -0.9 -3.0 hypothetical protein compare
Atu0025 -0.9 -1.2 hypothetical protein compare
Atu0211 -0.9 -5.1 hypothetical protein compare
Atu4711 -0.8 -3.4 two component sensor kinase compare
Atu2127 -0.8 -3.9 L-carnitine dehydratase compare
Atu2766 -0.8 -7.0 NAD-glutamate dehydrogenase compare
Atu2801 -0.8 -3.0 precorrin-2 C20 methyltransferase compare
Atu6036 -0.8 -1.3 entry-exclusion protein compare
Atu2379 -0.8 -5.2 phosphomannomutase compare
Atu0972 -0.8 -4.1 lipA protein compare
Atu3598 -0.8 -1.7 thiol:disulfide interchange protein compare
Atu1355 -0.8 -4.5 hypothetical protein compare
Atu4346 -0.8 -3.6 hypothetical protein compare
Atu3763 -0.8 -1.3 hypothetical protein compare
Atu1838 -0.8 -3.7 ABC transporter, substrate binding protein (amino acid) compare
Atu1810 -0.8 -1.1 hypothetical protein compare
Atu3739 -0.8 -2.2 phosphoglycerate kinase compare
Atu1581 -0.8 -1.8 hypothetical protein compare
Atu2808 -0.8 -3.3 cobyric acid synthase compare
Atu1182 -0.7 -1.8 hypothetical protein compare
Atu0815 -0.7 -1.4 hypothetical protein compare
Atu0698 -0.7 -3.2 hypothetical protein compare
Atu2832 -0.7 -3.1 tRNA modification GTPase compare
Atu5470 -0.7 -1.1 hypothetical protein compare
Atu0690 -0.7 -1.5 hypothetical protein compare
Atu2650 -0.7 -5.4 glycerol-3-phosphate dehydrogenase compare
Atu0795 -0.7 -2.2 hypothetical protein compare
Atu5057 -0.7 -1.6 hypothetical protein compare
Atu2114 -0.7 -2.7 molecular chaperone, DnaJ family compare
Atu1714 -0.7 -1.3 exonuclease III compare
Atu0187 -0.7 -5.3 ABC transporter, substrate binding protein (peptide) compare
Atu0048 -0.7 -4.6 hypothetical protein compare
Atu1110 -0.7 -2.2 cytosol aminopeptidase compare
Atu0894 -0.7 -2.4 ABC transporter, membrane spanning protein compare
Atu2368 -0.7 -1.1 hypothetical protein compare
Atu2798 -0.7 -1.8 precorrin-6y methyltransferase compare
Atu0302 -0.7 -4.5 tetrapyrrole methylase family protein compare
Atu2406 -0.7 -2.2 hypothetical protein compare
Atu4873 -0.7 -3.8 TetR family transcriptional regulator compare
Atu0026 -0.7 -0.7 hypothetical protein compare
Atu0693 -0.7 -4.2 PmbA/TldD related protein compare
Atu3712 -0.7 -1.1 hypothetical protein compare
Atu1759 -0.6 -3.8 L-serine dehydratase compare
Atu1177 -0.6 -2.4 hypothetical protein compare
Atu0036 -0.6 -1.7 hypothetical protein compare
Atu0886 -0.6 -0.7 hypothetical protein compare
Atu2548 -0.6 -4.5 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu5125 -0.6 -2.8 GntR family transcriptional regulator compare
Atu2746 -0.6 -1.8 hypothetical protein compare
Atu0920 -0.6 -2.3 hypothetical protein compare
Atu1620 -0.6 -4.2 triosephosphate isomerase compare
Atu6189 -0.6 -1.0 protein secretion chaperone compare
Atu0503 -0.6 -5.0 enoyl-CoA hydratase compare
Atu2192 -0.6 -1.0 hypothetical protein compare
Atu1175 -0.6 -1.3 hypothetical protein compare
Atu2511 -0.6 -4.1 D-alanine aminotransferase compare
Atu1775 -0.6 -2.6 polyketide biosynthesis associated protein compare
Atu4522 -0.6 -4.3 hypothetical protein compare
Atu1774 -0.6 -3.8 ABC transporter, substrate binding protein (peptide) compare
Atu3798 -0.6 -1.6 TetR family transcriptional regulator compare
Atu2793 -0.6 -2.5 cobyrinic acid a,c-diamide synthase compare
Atu1252 -0.6 -1.9 hypothetical protein compare
Atu4418 -0.6 -1.4 glutaryl-CoA dehydrogenase compare
Atu8167 -0.6 -4.2 putative transmembrane protein compare
Atu2804 -0.6 -4.3 cobaltochelatase subunit compare
Atu3008 -0.6 -0.7 hypothetical protein compare
Atu4419 -0.6 -4.1 LysR family transcriptional regulator compare
Atu3468 -0.6 -0.6 hypothetical protein compare
Atu2236 -0.6 -2.5 adenine phosphoribosyltransferase compare
Atu0045 -0.6 -3.4 heat shock chaperone compare
Atu2802 -0.6 -2.9 precorrin-8X methylmutase compare
Atu1588 -0.6 -2.8 homoserine dehydrogenase compare
Atu2805 -0.6 -3.1 cobalamin synthesis protein compare
Atu1678 -0.6 -1.8 S-adenosylmethionine tRNA ribosyltransferase-isomerase compare
Atu1190 -0.6 -2.0 hypothetical protein compare
Atu0640 -0.6 -1.7 hypothetical protein compare
Atu3387 -0.6 -3.0 sigma factor compare
Atu0976 -0.6 -0.9 cycL protein compare
Atu2293 -0.6 -1.1 hypothetical protein compare
Atu0479 -0.6 -2.3 ABC transporter, substrate binding protein (amino acid) compare
Atu1486 -0.6 -2.6 hypothetical protein compare
Atu3908 -0.6 -3.7 GntR family transcriptional regulator compare
Atu4223 -0.5 -1.1 sarcosine oxidase delta subunit compare
Atu0007 -0.5 -2.8 hypothetical protein compare
Atu2352 -0.5 -1.4 hypothetical protein compare
Atu1542 -0.5 -2.4 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu2803 -0.5 -2.4 Cobalamin biosynthesis associated protein compare
Atu5043 -0.5 -2.6 hypothetical protein compare
Atu0528 -0.5 -1.5 large conductance mechanosensitive channel protein compare
Atu3014 -0.5 -1.5 hypothetical protein compare
Atu1446 -0.5 -1.4 two component response regulator compare
Atu1614 -0.5 -2.9 phosphoglycolate phosphatase compare
Atu2489 -0.5 -2.9 hypothetical protein compare
Atu0711 -0.5 -4.0 potassium uptake protein compare
Atu1634 -0.5 -0.9 hypothetical protein compare
Atu0924 -0.5 -1.4 hypothetical protein compare
Atu2655 -0.5 -3.3 hypothetical protein compare
Atu0897 -0.5 -4.2 protease II compare
Atu2122 -0.5 -2.8 lytic murein transglycosylase compare
Atu0008 -0.5 -1.6 hypothetical protein compare
Atu0225 -0.5 -0.6 hypothetical protein compare
Atu2800 -0.5 -0.8 precorrin-3B C17-methyltransferase compare
Atu4792 -0.5 -1.1 hypothetical protein compare
Atu3496 -0.5 -1.3 hypothetical protein compare
Atu2017 -0.5 -0.8 hypothetical protein compare
Atu2067 -0.5 -0.5 hypothetical protein compare
Atu1354 -0.5 -0.8 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu2115 -0.5 -2.6 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu1380 -0.5 -2.5 zinc metallopeptidase compare
Atu3750 -0.5 -1.3 thiamine-phosphate pyrophosphorylase compare
Atu3539 -0.5 -2.2 hypothetical protein compare
Atu1902 -0.5 -2.1 transketolase compare
Atu2205 -0.5 -2.8 transcriptional regulator, MarR family compare
Atu2809 -0.5 -2.9 cobalamin biosynthesis protein compare


Specific Phenotypes

For 7 genes in this experiment

For stress Gentamicin sulfate salt in Agrobacterium fabrum C58

For stress Gentamicin sulfate salt across organisms