Experiment set5IT048 for Agrobacterium fabrum C58

Compare to:

R2A with Tetracycline hydrochloride 0.002 mM

200 most important genes:

  gene name fitness t score description  
Atu0030 -4.4 -2.0 phosphocarrier protein HPr compare
Atu2577 -3.6 -10.8 ABC transporter, nucleotide binding/ATPase protein compare
Atu3613 -3.4 -6.6 hypothetical protein compare
Atu0225 -3.4 -1.5 hypothetical protein compare
Atu2590 -3.2 -3.8 hypothetical protein compare
Atu3634 -3.1 -4.6 penicillin-binding protein dacf precursor compare
Atu1844 -3.1 -3.0 Phosphoribosylformylglycinamidine synthetase compare
Atu8138 -3.1 -2.0 hypothetical protein compare
Atu8180 -3.1 -5.9 hypothetical protein compare
Atu1846 -3.0 -1.9 hypothetical protein compare
Atu4149 -2.9 -4.0 UDP-glucose 6-dehydrogenase compare
Atu2710 -2.8 -4.8 hypothetical protein compare
Atu3763 -2.8 -1.9 hypothetical protein compare
Atu1131 -2.7 -7.9 outer membrane protein compare
Atu2113 -2.6 -3.1 N-acetylmuramoyl-L-alanine amidase compare
Atu2242 -2.6 -11.6 ABC transporter, nucleotide binding/ATPase protein conserved
Atu4346 -2.6 -5.4 hypothetical protein compare
Atu4217 -2.6 -1.8 TetR family transcriptional regulator compare
Atu0186 -2.5 -6.8 penicillin-insensitive murein endopeptidase compare
Atu0184 -2.5 -1.7 glucokinase compare
Atu0421 -2.5 -1.6 ABC transporter, membrane spanning protein compare
Atu2200 -2.3 -2.5 cold shock protein compare
Atu1163 -2.3 -2.0 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu8054 -2.3 -1.0 hypothetical protein compare
Atu2591 -2.3 -3.1 glucosyltransferase compare
Atu3739 -2.2 -2.6 phosphoglycerate kinase compare
Atu2550 -2.2 -9.9 RND multidrug efflux membrane permease conserved
Atu2584 -2.2 -1.5 hypothetical protein compare
Atu2583 -2.2 -4.0 glycosyltransferase compare
Atu1359 -2.2 -1.4 dnaK deletion suppressor protein compare
Atu6098 -2.2 -1.0 transcriptional regulator, HTH family compare
Atu4615 -2.2 -9.4 glucose-1-phosphate thymidylyltransferase compare
Atu4206 -2.2 -7.7 tetracycline resistance protein conserved
Atu3353 -2.1 -10.4 mannose-1-phosphate guanylyltransferase compare
Atu2551 -2.0 -11.0 RND multidrug efflux transporter compare
Atu3598 -2.0 -1.8 thiol:disulfide interchange protein compare
Atu0690 -2.0 -2.3 hypothetical protein compare
Atu2484 -2.0 -1.7 hypothetical protein compare
Atu0972 -1.9 -4.7 lipA protein compare
Atu2582 -1.9 -2.6 UDP-glucose/GDP-mannose dehydrogenase compare
Atu1149 -1.9 -1.7 adenylate cyclase compare
Atu0971 -1.9 -3.2 two component sensor kinase compare
Atu1028 -1.9 -1.8 hypothetical protein compare
Atu0780 -1.9 -6.6 hypothetical protein compare
Atu2183 -1.9 -7.2 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu1845 -1.9 -2.9 phosphoribosylformylglycinamidine synthase I compare
Atu2045 -1.9 -5.8 HFLK protein compare
Atu3798 -1.9 -3.6 TetR family transcriptional regulator compare
Atu0038 -1.9 -3.1 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu1677 -1.8 -3.5 queuine tRNA-ribosyltransferase compare
Atu0524 -1.8 -5.5 transcriptional regulator, LuxR family compare
Atu0784 -1.7 -3.5 hypothetical protein compare
Atu1327 -1.7 -3.0 NADH-ubiquinone oxidoreductase compare
Atu1447 -1.7 -2.9 two component sensor kinase compare
Atu0525 -1.7 -4.4 transcriptional regulator, LuxR family compare
Atu0777 -1.7 -1.1 hypothetical protein compare
Atu0486 -1.7 -2.3 dihydroorotate dehydrogenase compare
Atu1303 -1.7 -8.9 exoribonuclease compare
Atu2801 -1.7 -3.5 precorrin-2 C20 methyltransferase compare
Atu4166 -1.7 -1.6 UDP-glucose 4-epimerase compare
Atu1466 -1.6 -1.8 hypothetical protein compare
Atu0400 -1.6 -2.9 orotate phosphoribosyltransferase compare
Atu0382 -1.6 -3.6 hypothetical protein compare
Atu1285 -1.6 -4.8 metal dependent hydrolase compare
Atu3698 -1.6 -3.2 thioredoxin compare
Atu0353 -1.6 -5.8 acetyltransferase compare
Atu2379 -1.5 -6.1 phosphomannomutase compare
Atu0103 -1.5 -6.7 penicillin-binding protein compare
Atu1495 -1.5 -2.7 hypothetical protein compare
Atu0769 -1.5 -1.5 protoheme IX farnesyltransferase compare
Atu5540 -1.5 -1.0 hypothetical protein compare
Atu2592 -1.5 -1.8 hypothetical protein compare
Atu0106 -1.5 -3.7 cold shock protein compare
Atu3730 -1.5 -1.1 hypothetical protein compare
Atu4671 -1.5 -3.1 response regulator compare
Atu3311 -1.5 -9.8 phosphomannose isomerase compare
Atu1344 -1.5 -1.6 hypothetical protein compare
Atu1339 -1.4 -3.0 ribonuclease E compare
Atu3755 -1.4 -3.4 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu4148 -1.4 -1.4 UDP-glucuronic acid epimerase compare
Atu2726 -1.4 -9.1 pyruvate carboxylase compare
Atu0010 -1.4 -6.4 hypothetical protein compare
Atu2354 -1.4 -2.6 transcriptional regulator, MarR family compare
Atu1213 -1.4 -1.9 hypothetical protein compare
Atu5125 -1.4 -3.6 GntR family transcriptional regulator compare
Atu2802 -1.4 -5.1 precorrin-8X methylmutase compare
Atu0043 -1.4 -1.6 imidazoleglycerol-phosphate dehydratase compare
Atu1141 -1.4 -4.7 Phosphoribosylglycinamide synthetase compare
Atu3468 -1.4 -0.9 hypothetical protein compare
Atu0233 -1.3 -5.6 lysozyme compare
Atu0368 -1.3 -3.5 tRNA pseudouridine synthase I compare
Atu1009 -1.3 -2.2 hypothetical protein compare
Atu4477 -1.3 -5.4 TetR family transcriptional regulator compare
Atu1619 -1.3 -1.9 protein-export membrane protein SECG compare
Atu0399 -1.3 -4.0 dihydroorotase compare
Atu2044 -1.3 -4.6 HFLC protein compare
Atu3608 -1.3 -2.6 hypothetical protein compare
Atu0008 -1.3 -4.8 hypothetical protein compare
Atu4617 -1.3 -5.5 dTDP-D-glucose-4,6-dehydratase compare
Atu4317 -1.3 -2.2 TetR family transcriptional regulator compare
Atu3496 -1.3 -3.1 hypothetical protein compare
Atu1446 -1.3 -1.5 two component response regulator compare
Atu3486 -1.3 -1.5 DeoR family transcriptional regulator compare
Atu0920 -1.2 -2.5 hypothetical protein compare
Atu1850 -1.2 -2.0 phosphoribosylformylglycinamidine synthetase II compare
Atu2522 -1.2 -7.4 agrobacterium chromosomal virulence protein B compare
Atu4072 -1.2 -1.3 nodulation protein N compare
Atu1546 -1.2 -4.1 transcriptional regulator, MerR family compare
Atu1535 -1.2 -2.7 cytochrome c oxidase, FixQ chain compare
Atu2798 -1.2 -2.9 precorrin-6y methyltransferase compare
Atu4614 -1.2 -5.0 glycosyltransferase compare
Atu1529 -1.2 -3.2 nitrogen fixation protein FixH compare
Atu0723 -1.2 -1.1 FAD dependent oxidoreductase compare
Atu4613 -1.2 -7.4 glycosyltransferase compare
Atu1308 -1.2 -2.9 aspartate carbamoyl transferase catalytic subunit compare
Atu3712 -1.2 -1.2 hypothetical protein compare
Atu1075 -1.1 -3.3 amidophosphoribosyltransferase compare
Atu5160 -1.1 -2.3 transcriptional regulator protein compare
Atu4618 -1.1 -6.0 dTDP-rhamnose-3,5-epimerase compare
Atu1570 -1.1 -0.9 hypothetical protein compare
Atu0375 -1.1 -1.8 small heat shock protein compare
Atu2163 -1.1 -0.7 hypothetical protein compare
Atu1868 -1.1 -3.1 tRNA/rRNA methyltransferase compare
Atu1333 -1.1 -2.0 outer membrane protein compare
Atu0298 -1.1 -3.5 orotidine 5 compare
Atu2800 -1.1 -2.2 precorrin-3B C17-methyltransferase compare
Atu8020 -1.1 -2.5 hypothetical protein compare
Atu4418 -1.1 -2.6 glutaryl-CoA dehydrogenase compare
Atu0029 -1.1 -2.6 S-adenosylhomocysteine hydrolase compare
Atu5443 -1.1 -3.6 TetR family transcriptional regulator compare
Atu3754 -1.0 -1.9 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu0359 -1.0 -5.4 hemolysin compare
Atu0976 -1.0 -1.9 cycL protein compare
Atu2393 -1.0 -6.9 Acr family transporter conserved
Atu4502 -1.0 -3.8 cobalamin synthesis protein compare
Atu0290 -1.0 -4.1 rare lipoprotein A compare
Atu2753 -1.0 -4.9 ATP-dependent helicase compare
Atu8036 -1.0 -1.8 protein YBGT-like protein compare
Atu0041 -1.0 -1.0 glutamine amidotransferase compare
Atu1380 -1.0 -3.5 zinc metallopeptidase compare
Atu0419 -1.0 -1.1 two component sensor kinase compare
Atu1030 -1.0 -0.8 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu1634 -1.0 -1.2 hypothetical protein compare
Atu3120 -1.0 -0.9 hypothetical protein compare
Atu2831 -1.0 -1.9 glucose inhibited division protein A compare
Atu4893 -1.0 -3.0 hypothetical protein compare
Atu2073 -1.0 -2.3 membrane protein compare
Atu4888 -1.0 -2.6 hypothetical protein compare
Atu0510 -1.0 -4.4 pH adaption potassium efflux system protein compare
Atu0499 -1.0 -4.8 hypothetical protein compare
Atu3773 -1.0 -1.9 hypothetical protein compare
Atu0434 -1.0 -1.5 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu4108 -0.9 -3.8 ribonuclease D compare
Atu2799 -0.9 -2.1 precorrin-6x reductase compare
Atu1355 -0.9 -4.4 hypothetical protein compare
Atu2616 -0.9 -4.3 hypothetical protein compare
Atu4610 -0.9 -5.9 sugar nucleotide epimerase/dehydratase compare
Atu0598 -0.9 -4.0 phosphogluconate dehydratase compare
Atu3697 -0.9 -1.9 ATP-dependent protease LA 2 compare
Atu0601 -0.9 -4.9 oxidoreductase compare
Atu0638 -0.9 -1.6 hypothetical protein compare
Atu3674 -0.9 -2.3 hypothetical protein compare
Atu3006 -0.9 -2.3 hypothetical protein compare
Atu1127 -0.9 -1.1 molybdopterin converting factor small subunit compare
Atu3016 -0.9 -3.2 phosphoglyceromutase compare
Atu1530 -0.9 -4.2 nitrogen fixation protein FixG compare
Atu2615 -0.9 -4.2 hypothetical protein compare
Atu3509 -0.9 -1.9 hypothetical protein compare
Atu2809 -0.9 -4.0 cobalamin biosynthesis protein compare
Atu2464 -0.9 -1.2 formyltetrahydrofolate deformylase compare
Atu0142 -0.9 -1.8 cytochrome o ubiquinol oxidase subunit II compare
Atu2238 -0.9 -3.4 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu2796 -0.9 -2.3 precorrin-4 C11-methyltransferase compare
Atu1646 -0.9 -2.4 ABC transporter, nucleotide binding/ATPase protein compare
Atu1307 -0.9 -2.3 dihydroorotase compare
Atu0050 -0.9 -2.4 two component response regulator compare
Atu0727 -0.8 -5.5 ferredoxin I compare
Atu1534 -0.8 -2.8 cytochrome-c oxidase, FixP chain compare
Atu0405 -0.8 -6.4 long-chain-fatty-acid-CoA-ligase compare
Atu1714 -0.8 -1.1 exonuclease III compare
Atu1056 -0.8 -2.5 hypothetical protein compare
Atu8115 -0.8 -3.1 Hypothetical Protein compare
Atu6195 -0.8 -1.1 conserved hypothetical protein compare
Atu1902 -0.8 -2.3 transketolase compare
Atu2725 -0.8 -3.3 transcriptional regulator, DeoR family compare
Atu0768 -0.8 -4.9 cytochrome-c oxidase chain I compare
Atu8131 -0.8 -5.7 pH adaption potassium efflux system protein compare
Atu0647 -0.8 -3.1 phosphoribosylamine--glycine ligase compare
Atu0973 -0.8 -3.0 cycH protein compare
Atu2766 -0.8 -5.9 NAD-glutamate dehydrogenase compare
Atu2127 -0.8 -3.1 L-carnitine dehydratase compare
Atu4873 -0.8 -3.0 TetR family transcriptional regulator compare
Atu1254 -0.8 -1.2 transcriptional regulator, ArsR family compare
Atu8191 -0.8 -0.9 hypothetical protein compare
Atu1515 -0.8 -1.4 hypothetical protein compare
Atu3779 -0.8 -3.5 lytic murein transglycosylase compare
Atu2502 -0.8 -2.7 heme oxygenase compare
Atu8094 -0.8 -1.7 hypothetical protein compare
Atu4887 -0.8 -2.2 hypothetical protein compare
Atu0361 -0.8 -1.6 transcriptional regulator compare


Specific Phenotypes

For 25 genes in this experiment

For stress Tetracycline hydrochloride in Agrobacterium fabrum C58

For stress Tetracycline hydrochloride across organisms