Experiment set5IT047 for Agrobacterium fabrum C58

Compare to:

R2A with Kanamycin sulfate 0.02 mM

200 most important genes:

  gene name fitness t score description  
Atu0434 -3.3 -4.0 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu3486 -2.6 -4.4 DeoR family transcriptional regulator compare
Atu0103 -2.6 -8.4 penicillin-binding protein compare
Atu0017 -2.6 -2.5 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu3763 -2.5 -2.3 hypothetical protein compare
Atu2682 -2.5 -4.4 hypothetical protein compare
Atu0031 -2.4 -2.4 PTS system, IIA component compare
Atu0399 -2.4 -5.0 dihydroorotase compare
Atu1307 -2.2 -5.0 dihydroorotase compare
Atu1687 -2.0 -5.5 anthranilate phosphoribosyltransferase compare
Atu1844 -2.0 -3.9 Phosphoribosylformylglycinamidine synthetase compare
Atu2289 -2.0 -10.1 anthranilate synthase component I and II compare
Atu1688 -1.9 -4.6 indole-3-glycerol-phosphate synthase compare
Atu2113 -1.9 -3.5 N-acetylmuramoyl-L-alanine amidase compare
Atu0400 -1.9 -2.7 orotate phosphoribosyltransferase compare
Atu0486 -1.8 -7.1 dihydroorotate dehydrogenase compare
Atu2692 -1.8 -4.2 intracellular septation protein compare
Atu1030 -1.6 -2.1 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu2728 -1.6 -4.3 beta (1-->2) glucan export ATP-binding protein compare
Atu3469 -1.6 -2.3 phosphoglyceromutase compare
Atu1667 -1.6 -2.4 hypothetical protein compare
Atu3754 -1.5 -4.3 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu0298 -1.5 -5.4 orotidine 5 compare
Atu4317 -1.5 -4.3 TetR family transcriptional regulator compare
Atu0346 -1.5 -3.3 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu4896 -1.4 -2.8 acetyltransferase compare
Atu8088 -1.4 -3.0 hypothetical protein compare
Atu1308 -1.4 -3.6 aspartate carbamoyl transferase catalytic subunit compare
Atu2710 -1.4 -6.5 hypothetical protein compare
Atu4773 -1.3 -2.4 two component response regulator compare
Atu1182 -1.3 -2.1 hypothetical protein compare
Atu0971 -1.3 -4.1 two component sensor kinase compare
Atu2802 -1.3 -6.0 precorrin-8X methylmutase compare
Atu1714 -1.3 -2.0 exonuclease III compare
Atu0598 -1.3 -4.3 phosphogluconate dehydratase compare
Atu1542 -1.3 -5.7 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu4346 -1.3 -3.5 hypothetical protein compare
Atu1686 -1.3 -7.8 peptidyl-prolyl cis-trans isomerse D compare
Atu4890 -1.2 -2.1 IS426 transposase compare
Atu2799 -1.2 -3.0 precorrin-6x reductase compare
Atu8052 -1.2 -1.6 hypothetical protein compare
Atu0795 -1.2 -2.0 hypothetical protein compare
Atu2809 -1.2 -6.3 cobalamin biosynthesis protein compare
Atu2808 -1.1 -6.1 cobyric acid synthase compare
Atu2207 -1.1 -3.4 two component sensor kinase compare
Atu1075 -1.1 -5.3 amidophosphoribosyltransferase compare
Atu4541 -1.1 -2.0 carboxymuconolactone decarboxylase compare
Atu1354 -1.1 -1.4 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu2798 -1.1 -2.9 precorrin-6y methyltransferase compare
Atu1891 -1.1 -2.5 cobalamin biosynthesis protein compare
Atu2805 -1.0 -5.5 cobalamin synthesis protein compare
Atu1446 -1.0 -1.9 two component response regulator compare
Atu3008 -1.0 -1.0 hypothetical protein compare
Atu0876 -1.0 -1.9 superoxide dismutase compare
Atu4217 -1.0 -0.9 TetR family transcriptional regulator compare
Atu3579 -1.0 -3.2 lactoylglutathione lyase compare
Atu3009 -1.0 -1.2 exopolysaccharide production protein compare
Atu1739 -1.0 -4.4 permease compare
Atu0029 -1.0 -3.7 S-adenosylhomocysteine hydrolase compare
Atu1028 -1.0 -2.4 hypothetical protein compare
Atu0041 -1.0 -1.5 glutamine amidotransferase compare
Atu2804 -0.9 -6.1 cobaltochelatase subunit compare
Atu0322 -0.9 -4.1 enoyl CoA hydratase compare
Atu3083 -0.9 -2.7 hypothetical protein compare
Atu2795 -0.9 -5.7 cobalamin biosynthetic protein compare
Atu3013 -0.9 -3.9 hypothetical protein compare
Atu2801 -0.9 -3.0 precorrin-2 C20 methyltransferase compare
Atu1163 -0.9 -1.9 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu2807 -0.9 -4.3 cob(I)alamin adenosyltransferase compare
Atu3755 -0.9 -3.9 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu2040 -0.9 -3.5 phosphoserine phosphatase compare
Atu0470 -0.9 -1.9 hypothetical protein compare
Atu0184 -0.9 -1.3 glucokinase compare
Atu0972 -0.9 -3.0 lipA protein compare
Atu4873 -0.9 -3.8 TetR family transcriptional regulator compare
Atu0784 -0.8 -3.5 hypothetical protein compare
Atu0946 -0.8 -3.7 dehydrogenase compare
Atu6098 -0.8 -0.7 transcriptional regulator, HTH family compare
Atu1364 -0.8 -3.6 ATP-dependent Clp protease, ATP-binding subunit compare
Atu4075 -0.8 -4.5 glycogen synthase compare
Atu2803 -0.8 -3.4 Cobalamin biosynthesis associated protein compare
Atu1141 -0.8 -3.4 Phosphoribosylglycinamide synthetase compare
Atu2650 -0.8 -6.0 glycerol-3-phosphate dehydrogenase compare
Atu0647 -0.8 -2.5 phosphoribosylamine--glycine ligase compare
Atu2073 -0.8 -2.4 membrane protein compare
Atu1573 -0.8 -1.6 hypothetical protein compare
Atu8202 -0.8 -2.7 hypothetical protein compare
Atu2684 -0.8 -1.2 hypothetical protein compare
Atu1588 -0.8 -5.4 homoserine dehydrogenase compare
Atu0769 -0.8 -1.6 protoheme IX farnesyltransferase compare
Atu5125 -0.8 -2.4 GntR family transcriptional regulator compare
Atu0535 -0.8 -2.8 hypothetical protein compare
Atu1850 -0.8 -3.2 phosphoribosylformylglycinamidine synthetase II compare
Atu4882 -0.8 -1.6 hypothetical protein compare
Atu0039 -0.8 -1.4 imidazoleglycerol-phosphate synthase cyclase compare
Atu0188 -0.8 -1.8 ABC transporter, membrane spanning protein (peptide) compare
Atu1140 -0.8 -3.6 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu3006 -0.7 -2.7 hypothetical protein compare
Atu3963 -0.7 -2.8 GntR family transcriptional regulator compare
Atu3018 -0.7 -2.3 hypothetical protein compare
Atu3176 -0.7 -3.5 GntR family transcriptional regulator compare
Atu2796 -0.7 -3.4 precorrin-4 C11-methyltransferase compare
Atu4878 -0.7 -3.2 hypothetical protein compare
Atu3727 -0.7 -1.9 hypothetical protein compare
Atu1405 -0.7 -1.4 transcriptional regulator, GntR family compare
Atu0062 -0.7 -4.0 transcriptional regulator, ROK family compare
Atu3034 -0.7 -2.3 ROK family transcriptional regulator compare
Atu0977 -0.7 -2.0 serine protease DO-like protease compare
Atu3730 -0.7 -1.1 hypothetical protein compare
Atu0824 -0.7 -1.0 hypothetical protein compare
Atu4897 -0.7 -1.6 hypothetical protein compare
Atu4613 -0.7 -5.4 glycosyltransferase compare
Atu2640 -0.7 -2.6 hypothetical protein compare
Atu1355 -0.7 -3.2 hypothetical protein compare
Atu1634 -0.7 -1.6 hypothetical protein compare
Atu0401 -0.7 -3.5 fructokinase compare
Atu4854 -0.7 -2.4 hypothetical protein compare
Atu0152 -0.7 -1.7 hypothetical protein compare
Atu4567 -0.7 -3.4 ROK family transcriptional regulator compare
Atu0149 -0.7 -2.9 enoyl-(acyl-carrier-protein) reductase compare
Atu3750 -0.7 -2.0 thiamine-phosphate pyrophosphorylase compare
Atu4711 -0.6 -2.1 two component sensor kinase compare
Atu4869 -0.6 -2.2 hypothetical protein compare
Atu1677 -0.6 -2.2 queuine tRNA-ribosyltransferase compare
Atu2662 -0.6 -1.2 acetyltransferase compare
Atu1781 -0.6 -1.5 hypothetical protein compare
Atu1185 -0.6 -2.2 hypothetical protein compare
Atu0185 -0.6 -3.7 methylglyoxal synthase compare
Atu0939 -0.6 -1.2 PemI protein compare
Atu3001 -0.6 -1.7 hypothetical protein compare
Atu4894 -0.6 -2.5 transposase compare
Atu2832 -0.6 -2.5 tRNA modification GTPase compare
Atu0627 -0.6 -2.8 carboxymethylenebutenolidase compare
Atu1468 -0.6 -2.7 hypothetical protein compare
Atu4108 -0.6 -3.3 ribonuclease D compare
Atu0386 -0.6 -1.3 hypothetical protein compare
Atu0190 -0.6 -2.9 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu2183 -0.6 -3.8 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu3353 -0.6 -3.6 mannose-1-phosphate guanylyltransferase compare
Atu1515 -0.6 -2.8 hypothetical protein compare
Atu1110 -0.6 -1.7 cytosol aminopeptidase compare
Atu5173 -0.6 -1.5 dehydrogenase compare
Atu0726 -0.6 -3.2 ring hydroxylating dioxygenase, alpha-subunit compare
Atu2344 -0.6 -1.9 lactoylglutathione lyase compare
Atu0225 -0.6 -0.7 hypothetical protein compare
Atu4887 -0.6 -2.1 hypothetical protein compare
Atu0925 -0.6 -1.6 hypothetical protein compare
Atu4616 -0.6 -1.1 dTDP-4-dehydrorhamnose reductase compare
Atu4875 -0.6 -2.5 hypothetical protein compare
Atu6114 -0.6 -1.7 hypothetical protein compare
Atu2349 -0.6 -1.4 hypothetical protein compare
Atu1467 -0.6 -2.2 hypothetical protein compare
Atu2827 -0.6 -1.9 hypothetical protein compare
Atu4061 -0.6 -2.0 exopolysaccharide production repressor protein compare
Atu3712 -0.6 -1.1 hypothetical protein compare
Atu2036 -0.6 -4.0 acetolactate synthase III, large subunit compare
Atu3706 -0.6 -2.5 D-3-phosphoglycerate dehydrogenase compare
Atu0048 -0.6 -4.4 hypothetical protein compare
Atu0300 -0.6 -2.7 methyltransferase compare
Atu3798 -0.6 -3.2 TetR family transcriptional regulator compare
Atu4617 -0.6 -3.7 dTDP-D-glucose-4,6-dehydratase compare
Atu2657 -0.5 -1.6 hypothetical protein compare
Atu2067 -0.5 -0.6 hypothetical protein compare
Atu4199 -0.5 -3.2 TetR family transcriptional regulator compare
Atu4881 -0.5 -2.8 hypothetical protein compare
Atu2793 -0.5 -2.3 cobyrinic acid a,c-diamide synthase compare
Atu3289 -0.5 -2.4 thiamine-phosphate pyrophosphorylase compare
Atu4618 -0.5 -4.0 dTDP-rhamnose-3,5-epimerase compare
Atu4418 -0.5 -0.9 glutaryl-CoA dehydrogenase compare
Atu0361 -0.5 -1.1 transcriptional regulator compare
Atu2812 -0.5 -1.8 hypothetical protein compare
Atu1527 -0.5 -2.6 nitrogen fixation protein FixS compare
Atu0727 -0.5 -3.2 ferredoxin I compare
Atu3473 -0.5 -3.8 2-oxoisovalerate dehydrogenase subunit alpha compare
Atu4615 -0.5 -3.5 glucose-1-phosphate thymidylyltransferase compare
Atu0339 -0.5 -1.6 hypothetical protein compare
Atu0040 -0.5 -0.6 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu4888 -0.5 -1.8 hypothetical protein compare
Atu0941 -0.5 -0.6 hypothetical protein compare
Atu3485 -0.5 -2.4 short chain dehydrogenase compare
Atu1760 -0.5 -0.9 hypothetical protein compare
Atu0538 -0.5 -2.0 hypothetical protein compare
Atu1645 -0.5 -2.8 ABC transporter, substrate binding protein compare
Atu2578 -0.5 -2.2 cAMP-dependent protein kinase regulatory subunit compare
Atu0718 -0.5 -1.7 hypothetical protein compare
Atu2239 -0.5 -1.2 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu1464 -0.5 -2.6 glycine cleavage system T protein, aminomethyltransferase compare
Atu1629 -0.5 -0.8 transcriptional regulator, ArsR family compare
Atu3337 -0.5 -2.6 LacI family transcriptional regulator compare
Atu8152 -0.5 -2.6 hypothetical protein compare
Atu0886 -0.5 -1.0 hypothetical protein compare
Atu5158 -0.5 -1.3 hypothetical protein compare
Atu4893 -0.5 -2.1 hypothetical protein compare
Atu4166 -0.5 -1.2 UDP-glucose 4-epimerase compare
Atu1077 -0.5 -1.8 DNA repair protein compare
Atu4674 -0.5 -3.2 GntR family transcriptional regulator compare
Atu8012 -0.5 -1.2 hypothetical protein compare
Atu4546 -0.5 -2.0 IclR family transcriptional regulator compare
Atu1845 -0.5 -2.4 phosphoribosylformylglycinamidine synthase I compare
Atu1620 -0.5 -3.3 triosephosphate isomerase compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in stress experiments

For stress Kanamycin sulfate across organisms