Experiment set5IT033 for Agrobacterium fabrum C58

Compare to:

R2A with sodium iodate 30 mM

200 most important genes:

  gene name fitness t score description  
Atu1030 -2.8 -2.5 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0434 -2.8 -2.9 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu0399 -2.6 -7.6 dihydroorotase compare
Atu1308 -2.5 -6.9 aspartate carbamoyl transferase catalytic subunit compare
Atu1307 -2.5 -6.3 dihydroorotase compare
Atu0017 -2.4 -2.8 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu0486 -2.3 -7.2 dihydroorotate dehydrogenase compare
Atu0400 -2.1 -5.0 orotate phosphoribosyltransferase compare
Atu0040 -2.1 -1.6 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu3712 -2.0 -2.9 hypothetical protein compare
Atu2710 -2.0 -9.4 hypothetical protein compare
Atu1687 -2.0 -5.5 anthranilate phosphoribosyltransferase compare
Atu0723 -2.0 -2.5 FAD dependent oxidoreductase compare
Atu3008 -1.9 -1.4 hypothetical protein compare
Atu2289 -1.9 -10.8 anthranilate synthase component I and II compare
Atu0876 -1.9 -2.6 superoxide dismutase compare
Atu0298 -1.9 -5.3 orotidine 5 compare
Atu0025 -1.9 -2.4 hypothetical protein compare
Atu1686 -1.8 -10.2 peptidyl-prolyl cis-trans isomerse D compare
Atu3009 -1.7 -1.8 exopolysaccharide production protein compare
Atu1688 -1.7 -2.7 indole-3-glycerol-phosphate synthase compare
Atu0388 -1.5 -10.6 two component sensor kinase compare
Atu4773 -1.5 -2.4 two component response regulator compare
Atu0972 -1.5 -5.6 lipA protein compare
Atu0184 -1.4 -2.6 glucokinase compare
Atu1028 -1.4 -2.4 hypothetical protein compare
Atu4317 -1.3 -3.3 TetR family transcriptional regulator compare
Atu3012 -1.3 -1.4 hypothetical protein compare
Atu1163 -1.3 -2.4 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu3469 -1.3 -1.5 phosphoglyceromutase compare
Atu2728 -1.2 -5.2 beta (1-->2) glucan export ATP-binding protein compare
Atu1110 -1.2 -2.9 cytosol aminopeptidase compare
Atu3608 -1.2 -5.6 hypothetical protein compare
Atu4897 -1.2 -1.6 hypothetical protein compare
Atu1685 -1.0 -1.0 hypothetical protein compare
Atu3750 -1.0 -2.1 thiamine-phosphate pyrophosphorylase compare
Atu1359 -1.0 -1.2 dnaK deletion suppressor protein compare
Atu3754 -1.0 -2.9 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu2692 -1.0 -3.5 intracellular septation protein compare
Atu1850 -1.0 -1.8 phosphoribosylformylglycinamidine synthetase II compare
Atu0598 -1.0 -4.0 phosphogluconate dehydratase compare
Atu0103 -1.0 -6.9 penicillin-binding protein compare
Atu5427 -1.0 -2.5 hypothetical protein compare
Atu2125 -1.0 -1.1 ABC transporter, nucleotide binding/ATPase protein compare
Atu0039 -1.0 -1.7 imidazoleglycerol-phosphate synthase cyclase compare
Atu2183 -0.9 -4.5 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu2554 -0.9 -1.7 lysyl-tRNA synthetase compare
Atu4889 -0.9 -3.8 hypothetical protein compare
Atu3739 -0.9 -2.0 phosphoglycerate kinase compare
Atu0031 -0.9 -1.4 PTS system, IIA component compare
Atu3755 -0.9 -2.7 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu3634 -0.9 -3.1 penicillin-binding protein dacf precursor compare
Atu4896 -0.9 -2.2 acetyltransferase compare
Atu2793 -0.9 -2.9 cobyrinic acid a,c-diamide synthase compare
Atu4613 -0.9 -6.7 glycosyltransferase compare
Atu0185 -0.9 -3.7 methylglyoxal synthase compare
Atu0211 -0.9 -5.5 hypothetical protein compare
Atu4616 -0.8 -1.5 dTDP-4-dehydrorhamnose reductase compare
Atu0346 -0.8 -3.5 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu1845 -0.8 -2.6 phosphoribosylformylglycinamidine synthase I compare
Atu4617 -0.8 -4.5 dTDP-D-glucose-4,6-dehydratase compare
Atu0421 -0.8 -1.2 ABC transporter, membrane spanning protein compare
Atu3353 -0.8 -5.7 mannose-1-phosphate guanylyltransferase compare
Atu1446 -0.8 -1.7 two component response regulator compare
Atu1968 -0.8 -1.7 hypothetical protein compare
Atu1677 -0.8 -2.1 queuine tRNA-ribosyltransferase compare
Atu0201 -0.8 -1.4 hypothetical protein compare
Atu0189 -0.8 -2.8 ABC transporter, membrane spanning protein (peptide) compare
Atu1140 -0.8 -4.1 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu1774 -0.8 -3.9 ABC transporter, substrate binding protein (peptide) compare
Atu4075 -0.8 -4.7 glycogen synthase compare
Atu3013 -0.8 -3.5 hypothetical protein compare
Atu3491 -0.8 -2.0 hypothetical protein compare
Atu0837 -0.8 -2.8 transcriptional regulator, MarR family compare
Atu0479 -0.8 -3.9 ABC transporter, substrate binding protein (amino acid) compare
Atu0190 -0.8 -4.2 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu4890 -0.8 -1.5 IS426 transposase compare
Atu0435 -0.8 -1.5 tRNA-Gly compare
Atu4458 -0.7 -1.8 hypothetical protein compare
Atu1714 -0.7 -1.4 exonuclease III compare
Atu0097 -0.7 -3.4 hypothetical protein compare
Atu2650 -0.7 -4.6 glycerol-3-phosphate dehydrogenase compare
Atu2040 -0.7 -3.5 phosphoserine phosphatase compare
Atu0340 -0.7 -1.9 SAM dependent methyltransferase compare
Atu4618 -0.7 -5.2 dTDP-rhamnose-3,5-epimerase compare
Atu2489 -0.7 -3.4 hypothetical protein compare
Atu4792 -0.7 -1.8 hypothetical protein compare
Atu3011 -0.7 -1.6 ArsR family transcriptional regulator compare
Atu2722 -0.7 -4.7 porin compare
Atu3486 -0.7 -1.6 DeoR family transcriptional regulator compare
Atu0638 -0.7 -1.3 hypothetical protein compare
Atu3763 -0.7 -1.1 hypothetical protein compare
Atu1747 -0.7 -1.8 hypothetical protein compare
Atu2267 -0.7 -4.5 hypothetical protein compare
Atu2504 -0.7 -4.0 transcriptional regulator, GntR family compare
Atu0331 -0.7 -2.7 sigma-54 modulation protein compare
Atu3014 -0.7 -1.6 hypothetical protein compare
Atu0755 -0.7 -1.7 hypothetical protein compare
Atu8029 -0.6 -1.3 hypothetical protein compare
Atu4873 -0.6 -3.2 TetR family transcriptional regulator compare
Atu8161 -0.6 -1.3 hypothetical protein compare
Atu1445 -0.6 -2.6 two component sensor kinase compare
Atu2682 -0.6 -2.3 hypothetical protein compare
Atu4614 -0.6 -3.7 glycosyltransferase compare
Atu2113 -0.6 -1.2 N-acetylmuramoyl-L-alanine amidase compare
Atu4615 -0.6 -4.3 glucose-1-phosphate thymidylyltransferase compare
Atu4108 -0.6 -3.6 ribonuclease D compare
Atu0048 -0.6 -4.5 hypothetical protein compare
Atu1380 -0.6 -2.9 zinc metallopeptidase compare
Atu1739 -0.6 -3.2 permease compare
Atu1454 -0.6 -4.3 siroheme synthase compare
Atu1447 -0.6 -1.6 two component sensor kinase compare
Atu3311 -0.6 -4.9 phosphomannose isomerase compare
Atu1572 -0.6 -3.0 hydrolase compare
Atu0115 -0.6 -0.7 hypothetical protein compare
Atu0062 -0.6 -3.3 transcriptional regulator, ROK family compare
Atu6114 -0.6 -1.7 hypothetical protein compare
Atu4711 -0.6 -2.7 two component sensor kinase compare
Atu2800 -0.6 -1.4 precorrin-3B C17-methyltransferase compare
Atu3022 -0.6 -3.9 sugar ABC transporter permease compare
Atu1355 -0.6 -2.5 hypothetical protein compare
Atu1075 -0.6 -3.7 amidophosphoribosyltransferase compare
Atu0647 -0.6 -3.0 phosphoribosylamine--glycine ligase compare
Atu0953 -0.6 -0.7 hypothetical protein compare
Atu5045 -0.6 -0.8 hypothetical protein compare
Atu1667 -0.6 -1.1 hypothetical protein compare
Atu0925 -0.6 -1.3 hypothetical protein compare
Atu1904 -0.6 -1.4 transcriptional regulator compare
Atu1588 -0.6 -3.1 homoserine dehydrogenase compare
Atu2799 -0.6 -2.3 precorrin-6x reductase compare
Atu4166 -0.5 -1.4 UDP-glucose 4-epimerase compare
Atu1364 -0.5 -2.3 ATP-dependent Clp protease, ATP-binding subunit compare
Atu4061 -0.5 -2.0 exopolysaccharide production repressor protein compare
Atu0818 -0.5 -3.6 phosphoadenosine phosphosulfate reductase compare
Atu3016 -0.5 -2.4 phosphoglyceromutase compare
Atu2801 -0.5 -2.1 precorrin-2 C20 methyltransferase compare
Atu0361 -0.5 -1.8 transcriptional regulator compare
Atu4892 -0.5 -3.6 hypothetical protein compare
Atu2457 -0.5 -2.1 hypothetical protein compare
Atu2766 -0.5 -4.5 NAD-glutamate dehydrogenase compare
Atu3183 -0.5 -0.6 hypothetical protein compare
Atu4470 -0.5 -3.2 iron ABC transporter ATPase compare
Atu8054 -0.5 -0.5 hypothetical protein compare
Atu0188 -0.5 -0.9 ABC transporter, membrane spanning protein (peptide) compare
Atu2796 -0.5 -2.7 precorrin-4 C11-methyltransferase compare
Atu2802 -0.5 -4.0 precorrin-8X methylmutase compare
Atu0041 -0.5 -0.9 glutamine amidotransferase compare
Atu0300 -0.5 -2.9 methyltransferase compare
Atu5107 -0.5 -1.6 hypothetical protein compare
Atu4744 -0.5 -2.3 sugar ABC transporter substrate-binding protein compare
Atu0533 -0.5 -1.4 putative inhibitor of septum formation compare
Atu2045 -0.5 -2.9 HFLK protein compare
Atu8168 -0.5 -0.9 hypothetical protein compare
Atu3668 -0.5 -1.4 siderophore biosynthesis protein compare
Atu0904 -0.5 -2.0 hypothetical protein compare
Atu1484 -0.5 -2.1 transcriptional regulator compare
Atu3020 -0.5 -3.0 GntR family transcriptional regulator compare
Atu1021 -0.5 -1.5 outer membrane protein compare
Atu1535 -0.5 -1.1 cytochrome c oxidase, FixQ chain compare
Atu4176 -0.5 -2.9 hypothetical protein compare
Atu0784 -0.5 -1.3 hypothetical protein compare
Atu0167 -0.5 -2.0 transcriptional regulator, AraC family compare
Atu0422 -0.5 -1.1 ABC transporter, membrane spanning protein compare
Atu3517 -0.5 -3.2 acetyltransferase compare
Atu2805 -0.5 -2.5 cobalamin synthesis protein compare
Atu1054 -0.5 -2.5 hypothetical protein compare
Atu3518 -0.5 -3.6 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase compare
Atu1470 -0.5 -0.8 Camphor resistance protein compare
Atu0977 -0.5 -1.5 serine protease DO-like protease compare
Atu1804 -0.5 -2.3 hypothetical protein compare
Atu1606 -0.5 -2.3 methionine aminopeptidase compare
Atu5540 -0.5 -0.6 hypothetical protein compare
Atu0030 -0.5 -0.8 phosphocarrier protein HPr compare
Atu2548 -0.5 -3.7 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu1736 -0.5 -2.3 manganese transport protein compare
Atu3963 -0.5 -2.8 GntR family transcriptional regulator compare
Atu3706 -0.5 -3.3 D-3-phosphoglycerate dehydrogenase compare
Atu1072 -0.5 -2.5 hypothetical protein compare
Atu1542 -0.5 -2.1 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu4643 -0.5 -1.5 hypothetical protein compare
Atu2237 -0.5 -2.1 cytochrome c1 compare
Atu4187 -0.5 -0.8 tRNA-Met compare
Atu2379 -0.4 -3.1 phosphomannomutase compare
Atu3423 -0.4 -0.6 hypothetical protein compare
Atu3482 -0.4 -1.9 pantoate--beta-alanine ligase compare
Atu1077 -0.4 -1.5 DNA repair protein compare
Atu2616 -0.4 -3.1 hypothetical protein compare
Atu3076 -0.4 -2.2 uracil transport protein compare
Atu4567 -0.4 -2.8 ROK family transcriptional regulator compare
Atu1435 -0.4 -1.4 hypothetical protein compare
Atu1634 -0.4 -1.1 hypothetical protein compare
Atu1645 -0.4 -2.6 ABC transporter, substrate binding protein compare
Atu1339 -0.4 -1.6 ribonuclease E compare
Atu3032 -0.4 -1.8 hypothetical protein compare
Atu5474 -0.4 -2.5 2-hydroxyacid dehydrogenase compare
Atu2479 -0.4 -0.8 tRNA-Gly compare
Atu3485 -0.4 -2.9 short chain dehydrogenase compare
Atu2832 -0.4 -1.3 tRNA modification GTPase compare
Atu4884 -0.4 -1.7 hypothetical protein compare
Atu0947 -0.4 -1.4 transcriptional regulator, AsnC family compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in stress experiments

For stress sodium iodate across organisms