Experiment set5IT022 for Agrobacterium fabrum C58

Compare to:

R2A with sodium fluoride 0.2 mM

200 most important genes:

  gene name fitness t score description  
Atu0434 -3.0 -3.5 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu1030 -2.7 -2.5 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu1688 -2.6 -5.0 indole-3-glycerol-phosphate synthase compare
Atu1446 -2.5 -3.7 two component response regulator compare
Atu0043 -2.3 -3.8 imidazoleglycerol-phosphate dehydratase compare
Atu0723 -2.3 -3.0 FAD dependent oxidoreductase compare
Atu0346 -2.2 -5.0 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu3469 -2.2 -3.3 phosphoglyceromutase compare
Atu2554 -2.2 -3.2 lysyl-tRNA synthetase compare
Atu0017 -2.1 -2.5 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu2289 -2.0 -9.7 anthranilate synthase component I and II compare
Atu1470 -2.0 -1.3 Camphor resistance protein compare
Atu1687 -1.9 -5.1 anthranilate phosphoribosyltransferase compare
Atu1308 -1.9 -4.7 aspartate carbamoyl transferase catalytic subunit compare
Atu0399 -1.7 -6.0 dihydroorotase compare
Atu1307 -1.7 -4.9 dihydroorotase compare
Atu0769 -1.6 -2.0 protoheme IX farnesyltransferase compare
Atu0103 -1.5 -8.8 penicillin-binding protein compare
Atu0298 -1.5 -5.7 orotidine 5 compare
Atu2057 -1.5 -3.1 DNA helicase II compare
Atu0486 -1.5 -5.3 dihydroorotate dehydrogenase compare
Atu4317 -1.4 -2.6 TetR family transcriptional regulator compare
Atu1028 -1.4 -3.4 hypothetical protein compare
Atu8087 -1.4 -1.7 putative peptidoglycan binding protein compare
Atu2710 -1.3 -5.7 hypothetical protein compare
Atu8018 -1.3 -1.3 hypothetical protein compare
Atu2728 -1.3 -4.5 beta (1-->2) glucan export ATP-binding protein compare
Atu1891 -1.3 -4.1 cobalamin biosynthesis protein compare
Atu1140 -1.3 -4.5 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu1542 -1.2 -4.8 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu6165 -1.2 -1.5 hypothetical protein compare
Atu0400 -1.2 -3.5 orotate phosphoribosyltransferase compare
Atu2801 -1.2 -3.9 precorrin-2 C20 methyltransferase compare
Atu2207 -1.2 -4.5 two component sensor kinase compare
Atu0184 -1.2 -1.8 glucokinase compare
Atu0876 -1.1 -2.5 superoxide dismutase compare
Atu2793 -1.1 -4.2 cobyrinic acid a,c-diamide synthase compare
Atu1686 -1.1 -7.0 peptidyl-prolyl cis-trans isomerse D compare
Atu2113 -1.1 -2.7 N-acetylmuramoyl-L-alanine amidase compare
Atu3754 -1.1 -5.5 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu0777 -1.1 -1.1 hypothetical protein compare
Atu0977 -1.0 -4.0 serine protease DO-like protease compare
Atu0031 -1.0 -1.6 PTS system, IIA component compare
Atu4897 -1.0 -2.1 hypothetical protein compare
Atu1634 -1.0 -1.8 hypothetical protein compare
Atu2796 -1.0 -3.7 precorrin-4 C11-methyltransferase compare
Atu0029 -1.0 -3.5 S-adenosylhomocysteine hydrolase compare
Atu1588 -1.0 -5.7 homoserine dehydrogenase compare
Atu1503 -0.9 -1.3 hypothetical protein compare
Atu8138 -0.9 -1.8 hypothetical protein compare
Atu3706 -0.9 -6.0 D-3-phosphoglycerate dehydrogenase compare
Atu2798 -0.9 -3.7 precorrin-6y methyltransferase compare
Atu2803 -0.9 -3.6 Cobalamin biosynthesis associated protein compare
Atu3009 -0.9 -0.9 exopolysaccharide production protein compare
Atu0361 -0.9 -2.5 transcriptional regulator compare
Atu2804 -0.8 -6.0 cobaltochelatase subunit compare
Atu1845 -0.8 -2.1 phosphoribosylformylglycinamidine synthase I compare
Atu2805 -0.8 -5.2 cobalamin synthesis protein compare
Atu5125 -0.8 -3.0 GntR family transcriptional regulator compare
Atu2800 -0.8 -1.1 precorrin-3B C17-methyltransferase compare
Atu3707 -0.8 -2.2 phosphoserine aminotransferase compare
Atu1354 -0.8 -1.1 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu6045 -0.8 -1.5 replication protein C compare
Atu0647 -0.8 -4.6 phosphoribosylamine--glycine ligase compare
Atu1075 -0.8 -3.7 amidophosphoribosyltransferase compare
Atu0062 -0.7 -3.7 transcriptional regulator, ROK family compare
Atu2802 -0.7 -3.3 precorrin-8X methylmutase compare
Atu0039 -0.7 -1.5 imidazoleglycerol-phosphate synthase cyclase compare
Atu2017 -0.7 -1.1 hypothetical protein compare
Atu1077 -0.7 -2.6 DNA repair protein compare
Atu4896 -0.7 -1.1 acetyltransferase compare
Atu3727 -0.7 -1.9 hypothetical protein compare
Atu2640 -0.7 -3.0 hypothetical protein compare
Atu4893 -0.7 -4.0 hypothetical protein compare
Atu0269 -0.7 -2.4 exodeoxyribonuclease VII large subunit compare
Atu0538 -0.7 -2.7 hypothetical protein compare
Atu3183 -0.7 -0.8 hypothetical protein compare
Atu4108 -0.7 -4.8 ribonuclease D compare
Atu0354 -0.7 -1.3 ferric uptake regulator compare
Atu0726 -0.7 -4.6 ring hydroxylating dioxygenase, alpha-subunit compare
Atu4075 -0.7 -3.4 glycogen synthase compare
Atu2808 -0.7 -3.9 cobyric acid synthase compare
Atu3008 -0.7 -0.8 hypothetical protein compare
Atu1566 -0.7 -1.0 hypothetical protein compare
Atu2073 -0.7 -3.0 membrane protein compare
Atu2650 -0.6 -4.2 glycerol-3-phosphate dehydrogenase compare
Atu2125 -0.6 -1.5 ABC transporter, nucleotide binding/ATPase protein compare
Atu3429 -0.6 -1.3 hypothetical protein compare
Atu8054 -0.6 -0.6 hypothetical protein compare
Atu2368 -0.6 -1.1 hypothetical protein compare
Atu0185 -0.6 -2.1 methylglyoxal synthase compare
Atu1463 -0.6 -2.1 glycine cleavage system component H compare
Atu1694 -0.6 -1.8 hypothetical protein compare
Atu2799 -0.6 -2.8 precorrin-6x reductase compare
Atu2036 -0.6 -4.1 acetolactate synthase III, large subunit compare
Atu4346 -0.6 -3.5 hypothetical protein compare
Atu1620 -0.6 -4.2 triosephosphate isomerase compare
Atu1739 -0.6 -2.5 permease compare
Atu3014 -0.6 -1.4 hypothetical protein compare
Atu4881 -0.6 -3.6 hypothetical protein compare
Atu4873 -0.6 -3.6 TetR family transcriptional regulator compare
Atu4711 -0.6 -2.8 two component sensor kinase compare
Atu4773 -0.6 -1.2 two component response regulator compare
Atu1902 -0.6 -3.0 transketolase compare
Atu0971 -0.6 -2.5 two component sensor kinase compare
Atu2040 -0.6 -2.5 phosphoserine phosphatase compare
Atu2809 -0.6 -4.1 cobalamin biosynthesis protein compare
Atu0922 -0.6 -1.5 hypothetical protein compare
Atu8184 -0.6 -2.0 hypothetical protein compare
Atu0727 -0.6 -4.2 ferredoxin I compare
Atu2795 -0.6 -3.3 cobalamin biosynthetic protein compare
Atu1364 -0.6 -2.6 ATP-dependent Clp protease, ATP-binding subunit compare
Atu3121 -0.6 -1.1 cold shock protein compare
Atu3755 -0.6 -2.3 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu0401 -0.6 -2.1 fructokinase compare
Atu0115 -0.6 -0.7 hypothetical protein compare
Atu0976 -0.6 -1.9 cycL protein compare
Atu2787 -0.6 -0.7 hypothetical protein compare
Atu1141 -0.6 -3.6 Phosphoribosylglycinamide synthetase compare
Atu8144 -0.6 -2.1 hypothetical protein compare
Atu1679 -0.6 -1.4 peptidyl prolyl cis-trans isomerase compare
Atu2238 -0.5 -3.5 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu1103 -0.5 -1.1 rRNA-adenine N6,N6-dimethyltransferase compare
Atu3963 -0.5 -3.3 GntR family transcriptional regulator compare
Atu3393 -0.5 -2.0 pseudoazurin compare
Atu3593 -0.5 -3.7 hypothetical protein compare
Atu2827 -0.5 -2.1 hypothetical protein compare
Atu1850 -0.5 -1.8 phosphoribosylformylglycinamidine synthetase II compare
Atu0535 -0.5 -2.7 hypothetical protein compare
Atu0972 -0.5 -3.0 lipA protein compare
Atu3468 -0.5 -0.6 hypothetical protein compare
Atu1464 -0.5 -2.4 glycine cleavage system T protein, aminomethyltransferase compare
Atu1701 -0.5 -1.2 protein-L-isoaspartate O-methyltransferase compare
Atu0506 -0.5 -3.4 hypothetical protein compare
Atu6195 -0.5 -2.0 conserved hypothetical protein compare
Atu3264 -0.5 -1.9 IclR family transcriptional regulator compare
Atu3835 -0.5 -2.0 hypothetical protein compare
Atu0041 -0.5 -0.7 glutamine amidotransferase compare
Atu2127 -0.5 -2.6 L-carnitine dehydratase compare
Atu2205 -0.5 -2.8 transcriptional regulator, MarR family compare
Atu0795 -0.5 -1.2 hypothetical protein compare
Atu2752 -0.5 -2.4 hypothetical protein compare
Atu4451 -0.5 -3.7 mannitol 2-dehydrogenase compare
Atu3482 -0.5 -2.9 pantoate--beta-alanine ligase compare
Atu1518 -0.5 -1.9 transcriptional regulator, Fur family compare
Atu4864 -0.5 -2.9 MarR family transcriptional regulator compare
Atu0598 -0.5 -3.4 phosphogluconate dehydratase compare
Atu1066 -0.5 -2.5 hypothetical protein compare
Atu2349 -0.5 -1.3 hypothetical protein compare
Atu0768 -0.5 -3.4 cytochrome-c oxidase chain I compare
Atu3481 -0.5 -2.3 enoyl-CoA hydratase compare
Atu1444 -0.5 -2.5 nitrogen regulation protein compare
Atu5451 -0.5 -0.8 hypothetical protein compare
Atu3634 -0.5 -2.5 penicillin-binding protein dacf precursor compare
Atu5045 -0.5 -1.2 hypothetical protein compare
Atu3521 -0.5 -2.3 permease compare
Atu6157 -0.5 -2.8 conserved hypothetical protein compare
Atu3505 -0.5 -3.1 3-hydroxyisobutyryl-CoA hydrolase compare
Atu3740 -0.5 -2.9 fructose bisphosphate aldolase compare
Atu2766 -0.5 -4.1 NAD-glutamate dehydrogenase compare
Atu1874 -0.5 -1.0 RecA protein compare
Atu3485 -0.5 -3.7 short chain dehydrogenase compare
Atu1904 -0.5 -2.7 transcriptional regulator compare
Atu3032 -0.5 -1.7 hypothetical protein compare
Atu1983 -0.5 -2.9 hypothetical protein compare
Atu1351 -0.5 -2.4 hypothetical protein compare
Atu1952 -0.5 -0.7 hypothetical protein compare
Atu1468 -0.5 -2.5 hypothetical protein compare
Atu3324 -0.5 -1.6 hypothetical protein compare
Atu6114 -0.5 -1.3 hypothetical protein compare
Atu0894 -0.5 -0.9 ABC transporter, membrane spanning protein compare
Atu3668 -0.5 -1.6 siderophore biosynthesis protein compare
Atu5088 -0.5 -1.0 hypothetical protein compare
Atu2216 -0.4 -2.3 Xaa-Pro dipeptidase compare
Atu1777 -0.4 -2.0 hypothetical protein compare
Atu1736 -0.4 -2.5 manganese transport protein compare
Atu3466 -0.4 -1.5 ArsR family transcriptional regulator compare
Atu1810 -0.4 -0.9 hypothetical protein compare
Atu8118 -0.4 -3.0 putative universal stress protein compare
Atu2722 -0.4 -2.5 porin compare
Atu3579 -0.4 -1.7 lactoylglutathione lyase compare
Atu2831 -0.4 -2.1 glucose inhibited division protein A compare
Atu2789 -0.4 -1.8 hypothetical protein compare
Atu3759 -0.4 -0.9 hypothetical protein compare
Atu0348 -0.4 -1.5 hypothetical protein compare
Atu8165 -0.4 -1.0 hypothetical protein compare
Atu4617 -0.4 -3.6 dTDP-D-glucose-4,6-dehydratase compare
Atu0189 -0.4 -1.7 ABC transporter, membrane spanning protein (peptide) compare
Atu0280 -0.4 -1.2 hypothetical protein compare
Atu0152 -0.4 -1.2 hypothetical protein compare
Atu0237 -0.4 -2.0 hypothetical protein compare
Atu0630 -0.4 -1.3 hypothetical protein compare
Atu1021 -0.4 -1.0 outer membrane protein compare
Atu2239 -0.4 -1.4 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu0319 -0.4 -0.7 ubiquinone biosynthesis protein compare
Atu3483 -0.4 -1.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu4458 -0.4 -2.4 hypothetical protein compare
Atu0463 -0.4 -2.2 hypothetical protein compare
Atu4166 -0.4 -1.2 UDP-glucose 4-epimerase compare
Atu3037 -0.4 -3.0 dipeptide ABC transporter permease compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in stress experiments

For stress sodium fluoride across organisms