Experiment set5IT014 for Agrobacterium fabrum C58

Compare to:

R2A with copper (II) chloride dihydrate 0.04 mM

200 most important genes:

  gene name fitness t score description  
Atu0041 -3.9 -3.8 glutamine amidotransferase compare
Atu0039 -3.6 -4.3 imidazoleglycerol-phosphate synthase cyclase compare
Atu1308 -3.1 -8.1 aspartate carbamoyl transferase catalytic subunit compare
Atu0017 -2.8 -2.7 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu0486 -2.7 -6.5 dihydroorotate dehydrogenase compare
Atu1687 -2.7 -7.0 anthranilate phosphoribosyltransferase compare
Atu0434 -2.5 -4.5 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu0537 -2.5 -6.3 histidinol dehydrogenase compare
Atu0038 -2.5 -5.1 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu2289 -2.5 -12.2 anthranilate synthase component I and II compare
Atu0399 -2.4 -7.7 dihydroorotase compare
Atu1307 -2.4 -4.6 dihydroorotase compare
Atu0679 -2.2 -4.6 ATP phosphoribosyltransferase compare
Atu0040 -2.1 -1.7 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu0678 -2.1 -6.5 histidyl-tRNA synthetase compare
Atu0346 -2.0 -1.9 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu3885 -1.8 -7.2 inositol monophosphatase compare
Atu0400 -1.8 -4.5 orotate phosphoribosyltransferase compare
Atu1688 -1.8 -4.1 indole-3-glycerol-phosphate synthase compare
Atu0103 -1.7 -9.3 penicillin-binding protein compare
Atu1750 -1.7 -3.1 phosphoribosyl c-AMP cyclohydrolase compare
Atu1845 -1.6 -4.7 phosphoribosylformylglycinamidine synthase I compare
Atu3469 -1.5 -1.9 phosphoglyceromutase compare
Atu2057 -1.5 -3.0 DNA helicase II compare
Atu1446 -1.5 -3.0 two component response regulator compare
Atu0298 -1.4 -6.2 orotidine 5 compare
Atu2554 -1.4 -2.6 lysyl-tRNA synthetase compare
Atu2125 -1.4 -1.8 ABC transporter, nucleotide binding/ATPase protein compare
Atu0769 -1.3 -2.1 protoheme IX farnesyltransferase compare
Atu0043 -1.3 -2.3 imidazoleglycerol-phosphate dehydratase compare
Atu3707 -1.3 -3.7 phosphoserine aminotransferase compare
Atu1686 -1.2 -8.0 peptidyl-prolyl cis-trans isomerse D compare
Atu3754 -1.2 -4.2 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu0647 -1.2 -5.5 phosphoribosylamine--glycine ligase compare
Atu0184 -1.2 -1.7 glucokinase compare
Atu2710 -1.1 -7.0 hypothetical protein compare
Atu6098 -1.1 -0.9 transcriptional regulator, HTH family compare
Atu1141 -1.1 -6.8 Phosphoribosylglycinamide synthetase compare
Atu1075 -1.1 -5.1 amidophosphoribosyltransferase compare
Atu2692 -1.1 -3.2 intracellular septation protein compare
Atu1904 -1.1 -1.4 transcriptional regulator compare
Atu3183 -1.0 -1.1 hypothetical protein compare
Atu1163 -1.0 -2.1 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu1028 -1.0 -2.4 hypothetical protein compare
Atu6165 -1.0 -1.3 hypothetical protein compare
Atu1891 -1.0 -3.4 cobalamin biosynthesis protein compare
Atu4317 -1.0 -2.6 TetR family transcriptional regulator compare
Atu1140 -1.0 -4.6 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu3763 -1.0 -1.1 hypothetical protein compare
Atu2113 -1.0 -3.2 N-acetylmuramoyl-L-alanine amidase compare
Atu0972 -1.0 -4.8 lipA protein compare
Atu2207 -0.9 -4.4 two component sensor kinase compare
Atu0976 -0.9 -1.8 cycL protein compare
Atu0723 -0.9 -1.9 FAD dependent oxidoreductase compare
Atu1542 -0.9 -3.7 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu2800 -0.9 -3.6 precorrin-3B C17-methyltransferase compare
Atu3755 -0.9 -3.0 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu2270 -0.9 -1.9 ATP-dependent Clp protease, proteolytic subunit compare
Atu0971 -0.9 -3.9 two component sensor kinase compare
Atu4075 -0.8 -4.1 glycogen synthase compare
Atu0598 -0.8 -4.8 phosphogluconate dehydratase compare
Atu2802 -0.8 -4.7 precorrin-8X methylmutase compare
Atu3739 -0.8 -2.5 phosphoglycerate kinase compare
Atu2640 -0.8 -3.4 hypothetical protein compare
Atu4108 -0.8 -5.3 ribonuclease D compare
Atu1844 -0.8 -1.9 Phosphoribosylformylglycinamidine synthetase compare
Atu4773 -0.8 -1.8 two component response regulator compare
Atu3706 -0.8 -4.1 D-3-phosphoglycerate dehydrogenase compare
Atu3353 -0.8 -5.0 mannose-1-phosphate guanylyltransferase compare
Atu2728 -0.8 -3.2 beta (1-->2) glucan export ATP-binding protein compare
Atu0726 -0.8 -4.4 ring hydroxylating dioxygenase, alpha-subunit compare
Atu2796 -0.8 -3.4 precorrin-4 C11-methyltransferase compare
Atu2801 -0.8 -3.6 precorrin-2 C20 methyltransferase compare
Atu2807 -0.8 -3.1 cob(I)alamin adenosyltransferase compare
Atu0920 -0.8 -3.1 hypothetical protein compare
Atu2200 -0.8 -2.1 cold shock protein compare
Atu0036 -0.8 -2.6 hypothetical protein compare
Atu2808 -0.8 -4.6 cobyric acid synthase compare
Atu0062 -0.7 -5.0 transcriptional regulator, ROK family compare
Atu2804 -0.7 -5.0 cobaltochelatase subunit compare
Atu1327 -0.7 -2.0 NADH-ubiquinone oxidoreductase compare
Atu2650 -0.7 -5.2 glycerol-3-phosphate dehydrogenase compare
Atu0565 -0.7 -2.9 hypothetical protein compare
Atu0201 -0.7 -1.7 hypothetical protein compare
Atu4711 -0.7 -3.0 two component sensor kinase compare
Atu1736 -0.7 -4.1 manganese transport protein compare
Atu1364 -0.7 -3.9 ATP-dependent Clp protease, ATP-binding subunit compare
Atu0401 -0.7 -3.7 fructokinase compare
Atu1620 -0.7 -4.7 triosephosphate isomerase compare
Atu1685 -0.7 -0.8 hypothetical protein compare
Atu1836 -0.7 -1.7 hypothetical protein compare
Atu1850 -0.7 -1.1 phosphoribosylformylglycinamidine synthetase II compare
Atu1588 -0.7 -4.2 homoserine dehydrogenase compare
Atu1513 -0.6 -3.0 ABC excinuclease subunit A compare
Atu0718 -0.6 -1.8 hypothetical protein compare
Atu8115 -0.6 -2.9 Hypothetical Protein compare
Atu2821 -0.6 -2.0 transcriptional regulator, GntR family compare
Atu0185 -0.6 -3.6 methylglyoxal synthase compare
Atu2772 -0.6 -3.7 Invasion protein A compare
Atu4407 -0.6 -2.0 periplasmic nitrate reductase, NapD protein compare
Atu0189 -0.6 -2.2 ABC transporter, membrane spanning protein (peptide) compare
Atu0295 -0.6 -2.0 hypothetical protein compare
Atu3427 -0.6 -1.7 hypothetical protein compare
Atu1254 -0.6 -1.1 transcriptional regulator, ArsR family compare
Atu5088 -0.6 -1.2 hypothetical protein compare
Atu2123 -0.6 -2.5 methylenetetrahydrofolate reductase compare
Atu3008 -0.6 -0.7 hypothetical protein compare
Atu0687 -0.6 -1.6 hypothetical protein compare
Atu5114 -0.6 -2.7 hypothetical protein compare
Atu1846 -0.6 -1.0 hypothetical protein compare
Atu0419 -0.6 -1.8 two component sensor kinase compare
Atu3311 -0.6 -5.0 phosphomannose isomerase compare
Atu5513 -0.6 -1.5 cold shock protein compare
Atu1619 -0.6 -2.2 protein-export membrane protein SECG compare
Atu2063 -0.6 -1.5 hypothetical protein compare
Atu0361 -0.6 -1.8 transcriptional regulator compare
Atu3485 -0.6 -3.6 short chain dehydrogenase compare
Atu5455 -0.6 -1.8 hypothetical protein compare
Atu1774 -0.6 -3.5 ABC transporter, substrate binding protein (peptide) compare
Atu3727 -0.6 -1.3 hypothetical protein compare
Atu2809 -0.6 -3.8 cobalamin biosynthesis protein compare
Atu2799 -0.6 -2.1 precorrin-6x reductase compare
Atu2205 -0.6 -2.5 transcriptional regulator, MarR family compare
Atu3572 -0.6 -3.3 transcriptional regulator compare
Atu2040 -0.6 -2.4 phosphoserine phosphatase compare
Atu5475 -0.6 -1.7 hypothetical protein compare
Atu1127 -0.6 -1.7 molybdopterin converting factor small subunit compare
Atu8118 -0.6 -2.6 putative universal stress protein compare
Atu8202 -0.6 -2.1 hypothetical protein compare
Atu0190 -0.6 -2.9 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu2797 -0.5 -1.6 cobalamin biosynthesis protein compare
Atu1182 -0.5 -1.2 hypothetical protein compare
Atu5115 -0.5 -1.3 hypothetical protein compare
Atu3634 -0.5 -2.7 penicillin-binding protein dacf precursor compare
Atu2192 -0.5 -1.0 hypothetical protein compare
Atu2432 -0.5 -1.1 hypothetical protein compare
Atu3144 -0.5 -2.3 GntR family transcriptional regulator compare
Atu4095 -0.5 -2.0 hypothetical protein compare
Atu0211 -0.5 -3.2 hypothetical protein compare
Atu2824 -0.5 -2.2 hypothetical protein compare
Atu2183 -0.5 -3.0 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu2766 -0.5 -4.4 NAD-glutamate dehydrogenase compare
Atu0115 -0.5 -0.7 hypothetical protein compare
Atu1968 -0.5 -1.3 hypothetical protein compare
Atu0535 -0.5 -2.8 hypothetical protein compare
Atu0269 -0.5 -1.8 exodeoxyribonuclease VII large subunit compare
Atu2237 -0.5 -2.0 cytochrome c1 compare
Atu0501 -0.5 -3.7 acyl-CoA dehydrogenase compare
Atu0983 -0.5 -1.7 hypothetical protein compare
Atu2805 -0.5 -2.2 cobalamin synthesis protein compare
Atu1103 -0.5 -1.1 rRNA-adenine N6,N6-dimethyltransferase compare
Atu2379 -0.5 -3.7 phosphomannomutase compare
Atu8082 -0.5 -1.0 hypothetical protein compare
Atu1629 -0.5 -0.8 transcriptional regulator, ArsR family compare
Atu0762 -0.5 -1.6 hypothetical protein compare
Atu1634 -0.5 -1.0 hypothetical protein compare
Atu1030 -0.5 -0.9 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0188 -0.5 -1.0 ABC transporter, membrane spanning protein (peptide) compare
Atu4887 -0.5 -1.4 hypothetical protein compare
Atu1739 -0.5 -2.5 permease compare
Atu0375 -0.5 -1.5 small heat shock protein compare
Atu8165 -0.5 -1.0 hypothetical protein compare
Atu0025 -0.5 -1.0 hypothetical protein compare
Atu0727 -0.5 -3.0 ferredoxin I compare
Atu2504 -0.5 -2.3 transcriptional regulator, GntR family compare
Atu0719 -0.5 -2.7 transacetylase compare
Atu0162 -0.5 -2.0 biopolymer transport protein compare
Atu8176 -0.5 -1.2 hypothetical protein compare
Atu5504 -0.5 -2.0 hypothetical protein compare
Atu2127 -0.5 -2.7 L-carnitine dehydratase compare
Atu1677 -0.5 -2.4 queuine tRNA-ribosyltransferase compare
Atu0843 -0.5 -3.5 P type cation (metal) transporter, ATPase component compare
Atu0331 -0.5 -1.2 sigma-54 modulation protein compare
Atu0953 -0.5 -0.6 hypothetical protein compare
Atu0502 -0.5 -3.0 acetyl-CoA acetyltransferase compare
Atu2433 -0.5 -0.8 hypothetical protein compare
Atu1439 -0.5 -1.2 hypothetical protein compare
Atu0977 -0.5 -2.5 serine protease DO-like protease compare
Atu1333 -0.5 -1.5 outer membrane protein compare
Atu0503 -0.5 -3.9 enoyl-CoA hydratase compare
Atu1422 -0.4 -2.9 transcriptional regulator, MarR family compare
Atu2798 -0.4 -1.8 precorrin-6y methyltransferase compare
Atu4232 -0.4 -2.8 GntR family transcriptional regulator compare
Atu4841 -0.4 -3.1 DeoR family transcriptional regulator compare
Atu2238 -0.4 -2.1 ubiquinol-cytochrome c reductase cytochrome b subunit compare
Atu2794 -0.4 -2.6 uroporphyrin-III C-methyltransferase compare
Atu3912 -0.4 -2.5 hypothetical protein compare
Atu1535 -0.4 -1.6 cytochrome c oxidase, FixQ chain compare
Atu3757 -0.4 -1.5 hypothetical protein compare
Atu0354 -0.4 -1.2 ferric uptake regulator compare
Atu0044 -0.4 -2.8 heat shock protein hslV compare
Atu2352 -0.4 -1.2 hypothetical protein compare
Atu0767 -0.4 -2.5 cytochrome c oxidase subunit II compare
Atu2029 -0.4 -1.7 hypothetical protein compare
Atu3692 -0.4 -2.2 sigma factor compare
Atu1039 -0.4 -1.4 DNA repair protein RecO compare
Atu0453 -0.4 -2.4 hypothetical protein compare
Atu3011 -0.4 -1.7 ArsR family transcriptional regulator compare
Atu0728 -0.4 -1.3 hypothetical protein compare
Atu5487 -0.4 -2.3 hypothetical protein compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in stress experiments

For stress copper (II) chloride dihydrate across organisms