Experiment set5IT008 for Agrobacterium fabrum C58

Compare to:

R2A control

200 most important genes:

  gene name fitness t score description  
Atu1688 -3.0 -5.3 indole-3-glycerol-phosphate synthase compare
Atu1685 -2.4 -1.6 hypothetical protein compare
Atu1687 -2.3 -5.9 anthranilate phosphoribosyltransferase compare
Atu0017 -2.1 -2.7 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu1307 -2.1 -6.4 dihydroorotase compare
Atu2289 -2.0 -9.4 anthranilate synthase component I and II compare
Atu0434 -1.9 -2.4 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu0421 -1.9 -2.0 ABC transporter, membrane spanning protein compare
Atu3469 -1.9 -2.9 phosphoglyceromutase compare
Atu0647 -1.8 -4.9 phosphoribosylamine--glycine ligase compare
Atu0298 -1.6 -5.1 orotidine 5 compare
Atu0031 -1.6 -2.0 PTS system, IIA component compare
Atu0486 -1.6 -4.4 dihydroorotate dehydrogenase compare
Atu0103 -1.5 -9.1 penicillin-binding protein compare
Atu1308 -1.5 -4.7 aspartate carbamoyl transferase catalytic subunit compare
Atu0346 -1.4 -3.7 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu0399 -1.4 -3.5 dihydroorotase compare
Atu1359 -1.3 -1.4 dnaK deletion suppressor protein compare
Atu1686 -1.3 -7.3 peptidyl-prolyl cis-trans isomerse D compare
Atu4616 -1.3 -2.0 dTDP-4-dehydrorhamnose reductase compare
Atu3707 -1.3 -3.0 phosphoserine aminotransferase compare
Atu1844 -1.3 -2.8 Phosphoribosylformylglycinamidine synthetase compare
Atu1850 -1.2 -3.7 phosphoribosylformylglycinamidine synthetase II compare
Atu1075 -1.2 -4.4 amidophosphoribosyltransferase compare
Atu0185 -1.2 -4.8 methylglyoxal synthase compare
Atu4317 -1.2 -3.2 TetR family transcriptional regulator compare
Atu0184 -1.1 -1.9 glucokinase compare
Atu3712 -1.1 -2.0 hypothetical protein compare
Atu5451 -1.1 -1.1 hypothetical protein compare
Atu2728 -1.1 -3.8 beta (1-->2) glucan export ATP-binding protein compare
Atu1446 -1.1 -2.5 two component response regulator compare
Atu3754 -1.1 -4.3 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu4187 -1.1 -1.5 tRNA-Met compare
Atu0400 -1.0 -2.7 orotate phosphoribosyltransferase compare
Atu2802 -1.0 -4.9 precorrin-8X methylmutase compare
Atu1845 -1.0 -3.2 phosphoribosylformylglycinamidine synthase I compare
Atu4075 -1.0 -4.7 glycogen synthase compare
Atu5164 -1.0 -0.8 type IV secretion protein AvhB3 compare
Atu3598 -1.0 -1.6 thiol:disulfide interchange protein compare
Atu2796 -1.0 -3.9 precorrin-4 C11-methyltransferase compare
Atu1566 -0.9 -1.3 hypothetical protein compare
Atu3481 -0.9 -3.6 enoyl-CoA hydratase compare
Atu2640 -0.9 -3.0 hypothetical protein compare
Atu0419 -0.9 -2.7 two component sensor kinase compare
Atu3750 -0.9 -1.9 thiamine-phosphate pyrophosphorylase compare
Atu1570 -0.9 -1.0 hypothetical protein compare
Atu0876 -0.9 -1.3 superoxide dismutase compare
Atu0598 -0.9 -4.9 phosphogluconate dehydratase compare
Atu2793 -0.9 -3.2 cobyrinic acid a,c-diamide synthase compare
Atu1588 -0.9 -4.4 homoserine dehydrogenase compare
Atu4792 -0.8 -1.9 hypothetical protein compare
Atu2057 -0.8 -1.7 DNA helicase II compare
Atu0895 -0.8 -2.6 ABC transporter, substrate binding protein compare
Atu2710 -0.8 -3.3 hypothetical protein compare
Atu1542 -0.8 -3.4 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu0972 -0.8 -3.5 lipA protein compare
Atu3706 -0.8 -3.7 D-3-phosphoglycerate dehydrogenase compare
Atu2286 -0.8 -1.0 hypothetical protein compare
Atu2073 -0.8 -2.8 membrane protein compare
Atu3018 -0.8 -2.9 hypothetical protein compare
Atu4223 -0.8 -1.6 sarcosine oxidase delta subunit compare
Atu0824 -0.7 -1.0 hypothetical protein compare
Atu4418 -0.7 -3.5 glutaryl-CoA dehydrogenase compare
Atu1774 -0.7 -4.3 ABC transporter, substrate binding protein (peptide) compare
Atu5468 -0.7 -1.2 hypothetical protein compare
Atu3727 -0.7 -2.8 hypothetical protein compare
Atu2692 -0.7 -2.2 intracellular septation protein compare
Atu8099 -0.7 -2.1 hypothetical protein compare
Atu2808 -0.7 -3.5 cobyric acid synthase compare
Atu1355 -0.7 -3.0 hypothetical protein compare
Atu3755 -0.7 -3.0 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu0188 -0.7 -2.1 ABC transporter, membrane spanning protein (peptide) compare
Atu0744 -0.7 -1.6 hypothetical protein compare
Atu3075 -0.7 -4.1 TetR family transcriptional regulator compare
Atu4451 -0.7 -4.4 mannitol 2-dehydrogenase compare
Atu4873 -0.6 -3.7 TetR family transcriptional regulator compare
Atu4161 -0.6 -1.4 hypothetical protein compare
Atu3120 -0.6 -0.8 hypothetical protein compare
Atu2804 -0.6 -4.1 cobaltochelatase subunit compare
Atu5513 -0.6 -1.4 cold shock protein compare
Atu1062 -0.6 -1.3 phosphatidylserine synthase compare
Atu0331 -0.6 -2.4 sigma-54 modulation protein compare
Atu4346 -0.6 -2.3 hypothetical protein compare
Atu2799 -0.6 -2.6 precorrin-6x reductase compare
Atu0361 -0.6 -1.3 transcriptional regulator compare
Atu1140 -0.6 -2.7 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu2036 -0.6 -4.4 acetolactate synthase III, large subunit compare
Atu2809 -0.6 -2.8 cobalamin biosynthesis protein compare
Atu5470 -0.6 -1.1 hypothetical protein compare
Atu1141 -0.6 -2.4 Phosphoribosylglycinamide synthetase compare
Atu8047 -0.6 -2.2 hypothetical protein compare
Atu2805 -0.6 -2.3 cobalamin synthesis protein compare
Atu8177 -0.6 -2.0 hypothetical protein compare
Atu2650 -0.6 -3.4 glycerol-3-phosphate dehydrogenase compare
Atu0677 -0.6 -1.1 hypothetical protein compare
Atu0926 -0.6 -2.0 hypothetical protein compare
Atu0690 -0.6 -1.5 hypothetical protein compare
Atu0319 -0.6 -0.9 ubiquinone biosynthesis protein compare
Atu1028 -0.6 -1.2 hypothetical protein compare
Atu0401 -0.6 -3.3 fructokinase compare
Atu0029 -0.6 -2.9 S-adenosylhomocysteine hydrolase compare
Atu1030 -0.6 -0.7 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu0976 -0.6 -2.0 cycL protein compare
Atu0142 -0.6 -1.0 cytochrome o ubiquinol oxidase subunit II compare
Atu2766 -0.6 -4.7 NAD-glutamate dehydrogenase compare
Atu6149 -0.6 -2.0 hypothetical protein compare
Atu4419 -0.5 -3.5 LysR family transcriptional regulator compare
Atu2348 -0.5 -2.7 sugar binding protein compare
Atu2803 -0.5 -1.7 Cobalamin biosynthesis associated protein compare
Atu4857 -0.5 -2.5 mobilization protein C compare
Atu5485 -0.5 -1.4 hypothetical protein compare
Atu3579 -0.5 -1.9 lactoylglutathione lyase compare
Atu4854 -0.5 -2.1 hypothetical protein compare
Atu3510 -0.5 -1.8 amidohydrolase compare
Atu2125 -0.5 -1.1 ABC transporter, nucleotide binding/ATPase protein compare
Atu8138 -0.5 -1.1 hypothetical protein compare
Atu1694 -0.5 -2.1 hypothetical protein compare
Atu8063 -0.5 -1.3 hypothetical protein compare
Atu2807 -0.5 -2.1 cob(I)alamin adenosyltransferase compare
Atu0684 -0.5 -2.0 hypothetical protein compare
Atu1550 -0.5 -2.6 polypeptide deformylase compare
Atu1515 -0.5 -2.6 hypothetical protein compare
Atu0062 -0.5 -2.7 transcriptional regulator, ROK family compare
Atu5427 -0.5 -1.0 hypothetical protein compare
Atu1023 -0.5 -1.3 hypothetical protein compare
Atu2801 -0.5 -1.6 precorrin-2 C20 methyltransferase compare
Atu0795 -0.5 -1.4 hypothetical protein compare
Atu4108 -0.5 -2.8 ribonuclease D compare
Atu3698 -0.5 -2.2 thioredoxin compare
Atu0386 -0.5 -1.1 hypothetical protein compare
Atu0953 -0.5 -0.8 hypothetical protein compare
Atu6039 -0.5 -1.8 conjugal transfer protein compare
Atu1518 -0.5 -1.6 transcriptional regulator, Fur family compare
Atu3006 -0.5 -2.0 hypothetical protein compare
Atu5489 -0.5 -1.1 hypothetical protein compare
Atu3443 -0.5 -1.5 hypothetical protein compare
Atu0689 -0.5 -3.2 ribosomal large subunit pseudouridine synthase B compare
Atu1581 -0.5 -1.1 hypothetical protein compare
Atu3887 -0.5 -2.0 small heat shock protein compare
Atu5444 -0.5 -1.4 short-chain dehydrogenase compare
Atu0593 -0.5 -2.7 ABC transporter, membrane spanning protein compare
Atu0726 -0.5 -2.7 ring hydroxylating dioxygenase, alpha-subunit compare
Atu1380 -0.5 -2.3 zinc metallopeptidase compare
Atu2040 -0.5 -2.0 phosphoserine phosphatase compare
Atu4865 -0.5 -2.9 oxidoreductase compare
Atu0406 -0.5 -2.1 ABC transporter, nucleotide binding/ATPase protein compare
Atu3394 -0.5 -1.9 iron ABC transporter ATPase compare
Atu0339 -0.5 -1.7 hypothetical protein compare
Atu2207 -0.5 -1.3 two component sensor kinase compare
Atu3668 -0.5 -2.0 siderophore biosynthesis protein compare
Atu0723 -0.5 -1.0 FAD dependent oxidoreductase compare
Atu2800 -0.5 -2.0 precorrin-3B C17-methyltransferase compare
Atu2335 -0.5 -0.8 hypothetical protein compare
Atu3062 -0.5 -2.2 LacI family transcriptional regulator compare
Atu3634 -0.5 -2.0 penicillin-binding protein dacf precursor compare
Atu4827 -0.4 -3.4 ABC transporter permease compare
Atu4837 -0.4 -1.8 hypothetical protein compare
Atu3739 -0.4 -1.4 phosphoglycerate kinase compare
Atu0640 -0.4 -1.0 hypothetical protein compare
Atu0375 -0.4 -1.3 small heat shock protein compare
Atu3423 -0.4 -0.6 hypothetical protein compare
Atu4385 -0.4 -1.6 hypothetical protein compare
Atu4458 -0.4 -1.2 hypothetical protein compare
Atu1760 -0.4 -0.7 hypothetical protein compare
Atu4897 -0.4 -0.9 hypothetical protein compare
Atu4711 -0.4 -1.8 two component sensor kinase compare
Atu1701 -0.4 -1.3 protein-L-isoaspartate O-methyltransferase compare
Atu0765 -0.4 -2.1 TldD compare
Atu0427 -0.4 -1.2 hypothetical protein compare
Atu3055 -0.4 -2.6 hypothetical protein compare
Atu1836 -0.4 -1.1 hypothetical protein compare
Atu3293 -0.4 -1.8 D-amino acid dehydrogenase small subunit compare
Atu0135 -0.4 -1.9 uracil phosphoribosyltransferase compare
Atu4882 -0.4 -0.9 hypothetical protein compare
Atu4056 -0.4 -1.7 succinoglycan biosynthesis protein compare
Atu3044 -0.4 -1.8 asparaginase compare
Atu1739 -0.4 -1.8 permease compare
Atu2174 -0.4 -1.9 hypothetical protein compare
Atu3014 -0.4 -1.0 hypothetical protein compare
Atu3020 -0.4 -1.9 GntR family transcriptional regulator compare
Atu1389 -0.4 -2.5 ABC transporter, membrane spanning protein compare
Atu8118 -0.4 -1.5 putative universal stress protein compare
Atu4841 -0.4 -2.8 DeoR family transcriptional regulator compare
Atu1123 -0.4 -1.5 hypothetical protein compare
Atu3963 -0.4 -2.2 GntR family transcriptional regulator compare
Atu3086 -0.4 -2.1 spermidine/putrescine ABC transporter permease compare
Atu2041 -0.4 -1.0 acetyltransferase compare
Atu3040 -0.4 -3.0 hypothetical protein compare
Atu8029 -0.4 -0.8 hypothetical protein compare
Atu1620 -0.4 -3.1 triosephosphate isomerase compare
Atu0039 -0.4 -0.7 imidazoleglycerol-phosphate synthase cyclase compare
Atu2033 -0.4 -2.0 hypothetical protein compare
Atu1801 -0.4 -1.3 hypothetical protein compare
Atu3036 -0.4 -1.7 dipeptide ABC transporter permease compare
Atu4148 -0.4 -1.7 UDP-glucuronic acid epimerase compare
Atu3486 -0.4 -0.9 DeoR family transcriptional regulator compare
Atu0611 -0.4 -2.4 ABC transporter, membrane spanning protein compare
Atu2166 -0.4 -1.5 hypothetical protein compare
Atu8053 -0.4 -1.2 hypothetical protein compare
Atu2183 -0.4 -2.5 lipopolysaccharide core biosynthesis mannosyltransferase compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in r2a_control experiments