Experiment set5IT005 for Agrobacterium fabrum C58

Compare to:

R2A control

200 most important genes:

  gene name fitness t score description  
Atu5430 -4.1 -2.6 hypothetical protein compare
Atu1687 -2.4 -5.9 anthranilate phosphoribosyltransferase compare
Atu1307 -2.2 -4.6 dihydroorotase compare
Atu1308 -2.0 -5.6 aspartate carbamoyl transferase catalytic subunit compare
Atu8087 -1.9 -1.9 putative peptidoglycan binding protein compare
Atu0017 -1.9 -2.3 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu1354 -1.9 -1.9 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu0346 -1.8 -4.9 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu1688 -1.8 -4.8 indole-3-glycerol-phosphate synthase compare
Atu0298 -1.8 -7.4 orotidine 5 compare
Atu2289 -1.7 -9.9 anthranilate synthase component I and II compare
Atu0399 -1.7 -6.5 dihydroorotase compare
Atu0486 -1.7 -4.4 dihydroorotate dehydrogenase compare
Atu3598 -1.6 -1.9 thiol:disulfide interchange protein compare
Atu0103 -1.6 -9.1 penicillin-binding protein compare
Atu2554 -1.6 -2.3 lysyl-tRNA synthetase compare
Atu1685 -1.6 -1.3 hypothetical protein compare
Atu0421 -1.6 -1.8 ABC transporter, membrane spanning protein compare
Atu3012 -1.5 -2.2 hypothetical protein compare
Atu0400 -1.5 -4.1 orotate phosphoribosyltransferase compare
Atu3469 -1.5 -2.7 phosphoglyceromutase compare
Atu2057 -1.4 -2.6 DNA helicase II compare
Atu1850 -1.3 -4.5 phosphoribosylformylglycinamidine synthetase II compare
Atu0043 -1.3 -2.1 imidazoleglycerol-phosphate dehydratase compare
Atu1686 -1.2 -6.2 peptidyl-prolyl cis-trans isomerse D compare
Atu4075 -1.2 -4.8 glycogen synthase compare
Atu3754 -1.2 -4.9 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu0361 -1.1 -2.7 transcriptional regulator compare
Atu1714 -1.1 -1.7 exonuclease III compare
Atu0184 -1.1 -2.5 glucokinase compare
Atu1141 -1.0 -6.1 Phosphoribosylglycinamide synthetase compare
Atu0434 -1.0 -1.7 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu2270 -1.0 -1.5 ATP-dependent Clp protease, proteolytic subunit compare
Atu1844 -1.0 -2.6 Phosphoribosylformylglycinamidine synthetase compare
Atu3727 -1.0 -3.0 hypothetical protein compare
Atu1845 -1.0 -3.0 phosphoribosylformylglycinamidine synthase I compare
Atu0185 -1.0 -2.5 methylglyoxal synthase compare
Atu1588 -1.0 -5.4 homoserine dehydrogenase compare
Atu0647 -0.9 -4.1 phosphoribosylamine--glycine ligase compare
Atu2796 -0.9 -5.0 precorrin-4 C11-methyltransferase compare
Atu1075 -0.9 -4.9 amidophosphoribosyltransferase compare
Atu1223 -0.9 -1.4 hypothetical protein compare
Atu2793 -0.9 -3.6 cobyrinic acid a,c-diamide synthase compare
Atu2802 -0.9 -4.1 precorrin-8X methylmutase compare
Atu1891 -0.8 -2.3 cobalamin biosynthesis protein compare
Atu2125 -0.8 -1.8 ABC transporter, nucleotide binding/ATPase protein compare
Atu1683 -0.8 -1.4 hypothetical protein compare
Atu8056 -0.8 -1.0 hypothetical protein compare
Atu8054 -0.8 -0.6 hypothetical protein compare
Atu5164 -0.8 -0.7 type IV secretion protein AvhB3 compare
Atu0886 -0.8 -1.4 hypothetical protein compare
Atu1030 -0.8 -1.0 GTP pyrophosphohydrolase/synthetase, RelA/SpoT family compare
Atu1542 -0.8 -3.8 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu2808 -0.8 -3.7 cobyric acid synthase compare
Atu2406 -0.8 -1.7 hypothetical protein compare
Atu3750 -0.8 -1.3 thiamine-phosphate pyrophosphorylase compare
Atu1140 -0.8 -3.2 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu1163 -0.8 -1.4 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu4317 -0.8 -2.0 TetR family transcriptional regulator compare
Atu1446 -0.8 -1.3 two component response regulator compare
Atu0894 -0.7 -2.0 ABC transporter, membrane spanning protein compare
Atu3733 -0.7 -2.2 hypothetical protein compare
Atu3634 -0.7 -3.0 penicillin-binding protein dacf precursor compare
Atu0031 -0.7 -1.2 PTS system, IIA component compare
Atu3707 -0.7 -1.5 phosphoserine aminotransferase compare
Atu2801 -0.7 -2.9 precorrin-2 C20 methyltransferase compare
Atu0723 -0.7 -0.9 FAD dependent oxidoreductase compare
Atu0340 -0.7 -1.6 SAM dependent methyltransferase compare
Atu1028 -0.7 -1.4 hypothetical protein compare
Atu0029 -0.7 -2.6 S-adenosylhomocysteine hydrolase compare
Atu2805 -0.7 -2.7 cobalamin synthesis protein compare
Atu1904 -0.7 -1.9 transcriptional regulator compare
Atu3120 -0.7 -0.7 hypothetical protein compare
Atu3394 -0.7 -1.3 iron ABC transporter ATPase compare
Atu2710 -0.7 -4.3 hypothetical protein compare
Atu0956 -0.7 -1.9 phage prohead protease compare
Atu0386 -0.7 -1.3 hypothetical protein compare
Atu0598 -0.7 -3.7 phosphogluconate dehydratase compare
Atu2798 -0.7 -2.6 precorrin-6y methyltransferase compare
Atu2036 -0.7 -4.7 acetolactate synthase III, large subunit compare
Atu0142 -0.6 -1.3 cytochrome o ubiquinol oxidase subunit II compare
Atu2728 -0.6 -2.3 beta (1-->2) glucan export ATP-binding protein compare
Atu4837 -0.6 -1.8 hypothetical protein compare
Atu1191 -0.6 -1.7 hypothetical protein compare
Atu0039 -0.6 -1.0 imidazoleglycerol-phosphate synthase cyclase compare
Atu0036 -0.6 -0.9 hypothetical protein compare
Atu4711 -0.6 -2.9 two component sensor kinase compare
Atu0976 -0.6 -1.9 cycL protein compare
Atu0419 -0.6 -1.5 two component sensor kinase compare
Atu2831 -0.6 -3.2 glucose inhibited division protein A compare
Atu2040 -0.6 -1.9 phosphoserine phosphatase compare
Atu0354 -0.6 -1.3 ferric uptake regulator compare
Atu5540 -0.6 -0.6 hypothetical protein compare
Atu3009 -0.6 -0.6 exopolysaccharide production protein compare
Atu8195 -0.6 -0.7 hypothetical protein compare
Atu3755 -0.6 -2.4 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu4882 -0.6 -1.2 hypothetical protein compare
Atu5125 -0.6 -3.1 GntR family transcriptional regulator compare
Atu1103 -0.6 -2.2 rRNA-adenine N6,N6-dimethyltransferase compare
Atu6160 -0.6 -2.1 conserved hypothetical protein compare
Atu0051 -0.6 -3.2 two component sensor kinase compare
Atu8161 -0.6 -1.1 hypothetical protein compare
Atu2640 -0.6 -2.1 hypothetical protein compare
Atu1620 -0.6 -4.0 triosephosphate isomerase compare
Atu1535 -0.6 -1.0 cytochrome c oxidase, FixQ chain compare
Atu2809 -0.6 -2.7 cobalamin biosynthesis protein compare
Atu1333 -0.6 -1.3 outer membrane protein compare
Atu2807 -0.6 -3.1 cob(I)alamin adenosyltransferase compare
Atu0971 -0.6 -2.4 two component sensor kinase compare
Atu0777 -0.6 -0.6 hypothetical protein compare
Atu0322 -0.6 -2.4 enoyl CoA hydratase compare
Atu6195 -0.6 -2.0 conserved hypothetical protein compare
Atu4166 -0.5 -0.9 UDP-glucose 4-epimerase compare
Atu0876 -0.5 -0.8 superoxide dismutase compare
Atu1646 -0.5 -1.9 ABC transporter, nucleotide binding/ATPase protein compare
Atu8190 -0.5 -1.6 hypothetical protein compare
Atu2804 -0.5 -3.3 cobaltochelatase subunit compare
Atu3706 -0.5 -3.0 D-3-phosphoglycerate dehydrogenase compare
Atu2249 -0.5 -0.7 hypothetical protein compare
Atu1480 -0.5 -1.4 hypothetical protein compare
Atu1760 -0.5 -0.8 hypothetical protein compare
Atu3483 -0.5 -1.7 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu1252 -0.5 -2.2 hypothetical protein compare
Atu2803 -0.5 -1.9 Cobalamin biosynthesis associated protein compare
Atu4773 -0.5 -1.1 two component response regulator compare
Atu1592 -0.5 -1.5 hypothetical protein compare
Atu2578 -0.5 -2.2 cAMP-dependent protein kinase regulatory subunit compare
Atu3739 -0.5 -0.8 phosphoglycerate kinase compare
Atu1062 -0.5 -1.1 phosphatidylserine synthase compare
Atu2795 -0.5 -2.0 cobalamin biosynthetic protein compare
Atu1039 -0.5 -1.7 DNA repair protein RecO compare
Atu4148 -0.5 -1.5 UDP-glucuronic acid epimerase compare
Atu0041 -0.5 -0.6 glutamine amidotransferase compare
Atu0401 -0.5 -2.8 fructokinase compare
Atu5107 -0.5 -1.2 hypothetical protein compare
Atu2452 -0.5 -1.7 hypothetical protein compare
Atu2183 -0.5 -2.6 lipopolysaccharide core biosynthesis mannosyltransferase compare
Atu2771 -0.5 -2.0 bacterioferritin compare
Atu1676 -0.5 -2.1 para-aminobenzoate synthase component I compare
Atu1518 -0.5 -2.2 transcriptional regulator, Fur family compare
Atu0488 -0.5 -1.2 hypothetical protein compare
Atu0594 -0.5 -2.7 alpha-glucosidase compare
Atu3468 -0.5 -0.5 hypothetical protein compare
Atu1644 -0.5 -1.6 hypothetical protein compare
Atu0025 -0.5 -1.5 hypothetical protein compare
Atu1021 -0.5 -1.1 outer membrane protein compare
Atu2800 -0.5 -1.1 precorrin-3B C17-methyltransferase compare
Atu0938 -0.5 -2.0 transcriptional regulator, MerR family compare
Atu1447 -0.5 -1.1 two component sensor kinase compare
Atu8118 -0.5 -2.6 putative universal stress protein compare
Atu1677 -0.5 -1.4 queuine tRNA-ribosyltransferase compare
Atu0769 -0.5 -1.1 protoheme IX farnesyltransferase compare
Atu2762 -0.5 -1.7 hypothetical protein compare
Atu2207 -0.5 -2.4 two component sensor kinase compare
Atu2766 -0.5 -3.9 NAD-glutamate dehydrogenase compare
Atu0463 -0.5 -2.5 hypothetical protein compare
Atu3912 -0.4 -2.5 hypothetical protein compare
Atu0885 -0.4 -1.1 hypothetical protein compare
Atu4346 -0.4 -2.6 hypothetical protein compare
Atu1880 -0.4 -2.4 ABC transporter, membrane spanning protein (amino acid) compare
Atu1902 -0.4 -1.6 transketolase compare
Atu2799 -0.4 -1.2 precorrin-6x reductase compare
Atu5045 -0.4 -1.0 hypothetical protein compare
Atu1054 -0.4 -2.4 hypothetical protein compare
Atu0703 -0.4 -1.3 keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase compare
Atu0435 -0.4 -1.0 tRNA-Gly compare
Atu0565 -0.4 -1.0 hypothetical protein compare
Atu5427 -0.4 -1.2 hypothetical protein compare
Atu3668 -0.4 -1.5 siderophore biosynthesis protein compare
Atu2650 -0.4 -2.9 glycerol-3-phosphate dehydrogenase compare
Atu3046 -0.4 -2.9 oxidoreductase compare
Atu8031 -0.4 -2.8 hypothetical protein compare
Atu4418 -0.4 -1.6 glutaryl-CoA dehydrogenase compare
Atu3008 -0.4 -0.5 hypothetical protein compare
Atu0535 -0.4 -1.7 hypothetical protein compare
Atu0836 -0.4 -0.6 Glutathione-S-transferase compare
Atu1463 -0.4 -1.7 glycine cleavage system component H compare
Atu1846 -0.4 -0.9 hypothetical protein compare
Atu8162 -0.4 -0.7 hypothetical protein compare
Atu3048 -0.4 -2.7 oligopeptide ABC transporter permease compare
Atu2115 -0.4 -2.4 pyrophosphate--fructose-6-phosphate 1-phosphotransferase compare
Atu1364 -0.4 -1.8 ATP-dependent Clp protease, ATP-binding subunit compare
Atu1525 -0.4 -0.9 hypothetical protein compare
Atu4842 -0.4 -3.1 sugar ABC transporter substrate-binding protein compare
Atu3562 -0.4 -0.9 hypothetical protein compare
Atu0726 -0.4 -2.4 ring hydroxylating dioxygenase, alpha-subunit compare
Atu4171 -0.4 -2.1 cold-shock dead-box protein A compare
Atu0035 -0.4 -2.2 phosphoenolpyruvate carboxykinase compare
Atu2236 -0.4 -1.5 adenine phosphoribosyltransferase compare
Atu3415 -0.4 -1.9 ABC transporter substrate binding protein compare
Atu3545 -0.4 -1.8 hypothetical protein compare
Atu1490 -0.4 -1.1 arsenate reductase compare
Atu8170 -0.4 -0.9 hypothetical protein compare
Atu3593 -0.4 -2.2 hypothetical protein compare
Atu3521 -0.4 -1.6 permease compare
Atu0897 -0.4 -3.3 protease II compare
Atu8191 -0.4 -0.8 hypothetical protein compare
Atu2349 -0.4 -0.9 hypothetical protein compare
Atu3014 -0.4 -0.9 hypothetical protein compare
Atu2041 -0.4 -1.0 acetyltransferase compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in r2a_control experiments