Experiment set5IT003 for Agrobacterium fabrum C58

Compare to:

R2A control

200 most important genes:

  gene name fitness t score description  
Atu0434 -2.8 -2.4 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu0017 -2.6 -2.5 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu3598 -2.0 -3.0 thiol:disulfide interchange protein compare
Atu1688 -2.0 -4.0 indole-3-glycerol-phosphate synthase compare
Atu0346 -2.0 -4.9 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu1307 -2.0 -4.9 dihydroorotase compare
Atu1687 -1.9 -5.4 anthranilate phosphoribosyltransferase compare
Atu2289 -1.9 -10.6 anthranilate synthase component I and II compare
Atu0184 -1.9 -3.2 glucokinase compare
Atu3469 -1.9 -2.8 phosphoglyceromutase compare
Atu1308 -1.7 -6.4 aspartate carbamoyl transferase catalytic subunit compare
Atu0031 -1.7 -2.2 PTS system, IIA component compare
Atu0953 -1.7 -2.0 hypothetical protein compare
Atu0399 -1.7 -6.1 dihydroorotase compare
Atu0486 -1.6 -6.3 dihydroorotate dehydrogenase compare
Atu0298 -1.6 -7.0 orotidine 5 compare
Atu0400 -1.5 -5.3 orotate phosphoribosyltransferase compare
Atu4317 -1.5 -2.4 TetR family transcriptional regulator compare
Atu3008 -1.5 -1.4 hypothetical protein compare
Atu1028 -1.5 -2.7 hypothetical protein compare
Atu0103 -1.5 -9.7 penicillin-binding protein compare
Atu2787 -1.5 -1.7 hypothetical protein compare
Atu1354 -1.4 -1.3 6-hydroxymethyl-7,8-dihydropterin pyrophosphokinase compare
Atu8087 -1.4 -1.6 putative peptidoglycan binding protein compare
Atu0647 -1.2 -5.2 phosphoribosylamine--glycine ligase compare
Atu1686 -1.1 -6.7 peptidyl-prolyl cis-trans isomerse D compare
Atu2710 -1.1 -5.2 hypothetical protein compare
Atu1845 -1.0 -2.7 phosphoribosylformylglycinamidine synthase I compare
Atu5430 -1.0 -1.1 hypothetical protein compare
Atu0086 -1.0 -1.0 ribosome-binding factor A compare
Atu6165 -0.9 -1.3 hypothetical protein compare
Atu1844 -0.9 -2.7 Phosphoribosylformylglycinamidine synthetase compare
Atu3706 -0.9 -5.4 D-3-phosphoglycerate dehydrogenase compare
Atu1542 -0.9 -3.8 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu4075 -0.9 -4.1 glycogen synthase compare
Atu0036 -0.9 -3.1 hypothetical protein compare
Atu8054 -0.9 -0.8 hypothetical protein compare
Atu0723 -0.9 -1.5 FAD dependent oxidoreductase compare
Atu1075 -0.9 -5.2 amidophosphoribosyltransferase compare
Atu4161 -0.9 -1.7 hypothetical protein compare
Atu2040 -0.8 -2.4 phosphoserine phosphatase compare
Atu3031 -0.8 -1.2 hypothetical protein compare
Atu2554 -0.8 -1.2 lysyl-tRNA synthetase compare
Atu2728 -0.8 -3.3 beta (1-->2) glucan export ATP-binding protein compare
Atu3014 -0.8 -1.9 hypothetical protein compare
Atu0876 -0.8 -1.9 superoxide dismutase compare
Atu4166 -0.8 -2.1 UDP-glucose 4-epimerase compare
Atu1223 -0.8 -0.9 hypothetical protein compare
Atu0886 -0.8 -1.5 hypothetical protein compare
Atu3755 -0.8 -3.3 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu1846 -0.8 -1.6 hypothetical protein compare
Atu0185 -0.8 -1.2 methylglyoxal synthase compare
Atu1446 -0.7 -1.5 two component response regulator compare
Atu2804 -0.7 -5.2 cobaltochelatase subunit compare
Atu4893 -0.7 -3.4 hypothetical protein compare
Atu2803 -0.7 -3.1 Cobalamin biosynthesis associated protein compare
Atu0566 -0.7 -1.7 hypothetical protein compare
Atu1634 -0.7 -1.2 hypothetical protein compare
Atu3727 -0.7 -2.7 hypothetical protein compare
Atu4896 -0.7 -1.7 acetyltransferase compare
Atu1850 -0.7 -1.3 phosphoribosylformylglycinamidine synthetase II compare
Atu2650 -0.7 -5.0 glycerol-3-phosphate dehydrogenase compare
Atu0598 -0.7 -4.3 phosphogluconate dehydratase compare
Atu2113 -0.7 -1.2 N-acetylmuramoyl-L-alanine amidase compare
Atu1902 -0.7 -3.7 transketolase compare
Atu1714 -0.7 -1.3 exonuclease III compare
Atu1677 -0.7 -2.9 queuine tRNA-ribosyltransferase compare
Atu3739 -0.7 -1.3 phosphoglycerate kinase compare
Atu2798 -0.7 -2.2 precorrin-6y methyltransferase compare
Atu1588 -0.7 -4.5 homoserine dehydrogenase compare
Atu1355 -0.7 -4.0 hypothetical protein compare
Atu3036 -0.7 -3.1 dipeptide ABC transporter permease compare
Atu4878 -0.6 -3.2 hypothetical protein compare
Atu3006 -0.6 -2.2 hypothetical protein compare
Atu3712 -0.6 -0.7 hypothetical protein compare
Atu4773 -0.6 -1.4 two component response regulator compare
Atu0421 -0.6 -1.0 ABC transporter, membrane spanning protein compare
Atu3467 -0.6 -1.8 hypothetical protein compare
Atu0361 -0.6 -2.1 transcriptional regulator compare
Atu1359 -0.6 -0.9 dnaK deletion suppressor protein compare
Atu5485 -0.6 -1.8 hypothetical protein compare
Atu3754 -0.6 -2.7 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu4887 -0.6 -2.3 hypothetical protein compare
Atu8202 -0.6 -2.8 hypothetical protein compare
Atu1140 -0.6 -3.0 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu1364 -0.6 -2.8 ATP-dependent Clp protease, ATP-binding subunit compare
Atu4792 -0.6 -1.5 hypothetical protein compare
Atu1518 -0.6 -2.3 transcriptional regulator, Fur family compare
Atu3019 -0.6 -3.5 hypothetical protein compare
Atu3730 -0.6 -0.9 hypothetical protein compare
Atu1874 -0.6 -1.2 RecA protein compare
Atu5125 -0.6 -2.7 GntR family transcriptional regulator compare
Atu0401 -0.6 -2.5 fructokinase compare
Atu4892 -0.6 -4.0 hypothetical protein compare
Atu0025 -0.6 -1.1 hypothetical protein compare
Atu4890 -0.6 -1.2 IS426 transposase compare
Atu2640 -0.5 -2.3 hypothetical protein compare
Atu0565 -0.5 -2.3 hypothetical protein compare
Atu0038 -0.5 -2.7 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu3750 -0.5 -1.5 thiamine-phosphate pyrophosphorylase compare
Atu0043 -0.5 -1.5 imidazoleglycerol-phosphate dehydratase compare
Atu3593 -0.5 -3.6 hypothetical protein compare
Atu5163 -0.5 -2.1 type IV secretion protein AvhB2 compare
Atu3698 -0.5 -3.2 thioredoxin compare
Atu0419 -0.5 -1.0 two component sensor kinase compare
Atu3144 -0.5 -2.0 GntR family transcriptional regulator compare
Atu2802 -0.5 -2.8 precorrin-8X methylmutase compare
Atu4873 -0.5 -3.1 TetR family transcriptional regulator compare
Atu4884 -0.5 -1.8 hypothetical protein compare
Atu0726 -0.5 -4.2 ring hydroxylating dioxygenase, alpha-subunit compare
Atu3482 -0.5 -3.1 pantoate--beta-alanine ligase compare
Atu1774 -0.5 -2.8 ABC transporter, substrate binding protein (peptide) compare
Atu3481 -0.5 -3.0 enoyl-CoA hydratase compare
Atu2036 -0.5 -3.7 acetolactate synthase III, large subunit compare
Atu1779 -0.5 -1.3 hypothetical protein compare
Atu0463 -0.5 -1.6 hypothetical protein compare
Atu8161 -0.5 -1.1 hypothetical protein compare
Atu1685 -0.5 -0.6 hypothetical protein compare
Atu3483 -0.5 -1.6 3-methyl-2-oxobutanoate hydroxymethyltransferase compare
Atu4876 -0.5 -3.3 oxidoreductase compare
Atu8151 -0.5 -1.2 hypothetical protein compare
Atu0029 -0.5 -2.5 S-adenosylhomocysteine hydrolase compare
Atu2831 -0.5 -2.5 glucose inhibited division protein A compare
Atu4108 -0.5 -2.7 ribonuclease D compare
Atu3496 -0.5 -1.4 hypothetical protein compare
Atu3963 -0.5 -3.3 GntR family transcriptional regulator compare
Atu3021 -0.5 -2.6 sugar ABC transporter ATPase compare
Atu4879 -0.5 -2.4 hypothetical protein compare
Atu2127 -0.4 -2.6 L-carnitine dehydratase compare
Atu3015 -0.4 -2.2 hypothetical protein compare
Atu1795 -0.4 -1.5 malonate transporter compare
Atu0152 -0.4 -1.2 hypothetical protein compare
Atu4875 -0.4 -2.3 hypothetical protein compare
Atu0870 -0.4 -2.1 trans-aconitate methyltransferase compare
Atu5160 -0.4 -0.9 transcriptional regulator protein compare
Atu2344 -0.4 -1.3 lactoylglutathione lyase compare
Atu5088 -0.4 -0.9 hypothetical protein compare
Atu1141 -0.4 -2.6 Phosphoribosylglycinamide synthetase compare
Atu4854 -0.4 -1.9 hypothetical protein compare
Atu3001 -0.4 -0.8 hypothetical protein compare
Atu2766 -0.4 -3.7 NAD-glutamate dehydrogenase compare
Atu4711 -0.4 -2.4 two component sensor kinase compare
Atu0236 -0.4 -1.2 hypothetical protein compare
Atu2073 -0.4 -2.0 membrane protein compare
Atu1775 -0.4 -1.9 polyketide biosynthesis associated protein compare
Atu0062 -0.4 -2.8 transcriptional regulator, ROK family compare
Atu0493 -0.4 -1.9 hypothetical protein compare
Atu2796 -0.4 -1.8 precorrin-4 C11-methyltransferase compare
Atu0190 -0.4 -2.4 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu0895 -0.4 -1.4 ABC transporter, substrate binding protein compare
Atu4615 -0.4 -3.0 glucose-1-phosphate thymidylyltransferase compare
Atu2805 -0.4 -2.5 cobalamin synthesis protein compare
Atu1229 -0.4 -1.2 hypothetical protein compare
Atu2799 -0.4 -2.1 precorrin-6x reductase compare
Atu0861 -0.4 -1.8 hypothetical protein compare
Atu2450 -0.4 -1.2 hypothetical protein compare
Atu1103 -0.4 -0.9 rRNA-adenine N6,N6-dimethyltransferase compare
Atu2205 -0.4 -1.8 transcriptional regulator, MarR family compare
Atu2347 -0.4 -2.8 ABC transporter, nucleotide binding/ATPase protein (sugar) compare
Atu0535 -0.4 -1.5 hypothetical protein compare
Atu2116 -0.4 -1.5 hypothetical protein compare
Atu2028 -0.4 -1.2 transcriptional regulator, ArsR family compare
Atu1062 -0.4 -1.0 phosphatidylserine synthase compare
Atu1123 -0.4 -1.8 hypothetical protein compare
Atu0767 -0.4 -1.5 cytochrome c oxidase subunit II compare
Atu0369 -0.4 -1.7 hypothetical protein compare
Atu0331 -0.4 -1.2 sigma-54 modulation protein compare
Atu3634 -0.4 -1.2 penicillin-binding protein dacf precursor compare
Atu8063 -0.4 -1.3 hypothetical protein compare
Atu4857 -0.4 -2.0 mobilization protein C compare
Atu1587 -0.4 -2.3 hypothetical protein compare
Atu3740 -0.4 -2.6 fructose bisphosphate aldolase compare
Atu2274 -0.4 -2.4 cation efflux system protein compare
Atu1339 -0.4 -1.8 ribonuclease E compare
Atu3969 -0.4 -1.8 sugar ABC transporter permease compare
Atu0106 -0.4 -1.5 cold shock protein compare
Atu4072 -0.4 -0.8 nodulation protein N compare
Atu0977 -0.4 -1.2 serine protease DO-like protease compare
Atu0687 -0.4 -1.1 hypothetical protein compare
Atu6179 -0.4 -1.9 virA/G regulated protein compare
Atu2306 -0.4 -1.8 methionine aminopeptidase compare
Atu0592 -0.4 -1.9 ABC transporter, membrane spanning protein compare
Atu0595 -0.4 -2.7 ABC transporter, nucleotide binding/ATPase protein compare
Atu2348 -0.4 -2.1 sugar binding protein compare
Atu1038 -0.4 -1.0 two component response regulator compare
Atu0603 -0.4 -1.8 hypothetical protein compare
Atu0976 -0.4 -1.1 cycL protein compare
Atu4391 -0.4 -0.8 nitric oxide reductase NorE protein compare
Atu3020 -0.4 -1.7 GntR family transcriptional regulator compare
Atu0881 -0.4 -1.9 cytochrome C-556 compare
Atu5424 -0.4 -2.5 oxidoreductase compare
Atu2800 -0.4 -1.5 precorrin-3B C17-methyltransferase compare
Atu1734 -0.4 -1.1 hypothetical protein compare
Atu2794 -0.4 -1.4 uroporphyrin-III C-methyltransferase compare
Atu3032 -0.4 -0.8 hypothetical protein compare
Atu2791 -0.4 -2.2 3-isopropylmalate dehydrogenase compare
Atu2267 -0.4 -1.8 hypothetical protein compare
Atu8184 -0.4 -1.9 hypothetical protein compare
Atu1176 -0.4 -1.1 hypothetical protein compare
Atu3912 -0.4 -2.1 hypothetical protein compare


Specific Phenotypes

For 1 genes in this experiment