Experiment set5IT002 for Agrobacterium fabrum C58

Compare to:

R2A control

200 most important genes:

  gene name fitness t score description  
Atu0017 -3.6 -2.5 N-(5-phosphoribosyl) anthranilate isomerase compare
Atu1687 -2.5 -6.5 anthranilate phosphoribosyltransferase compare
Atu0399 -2.3 -6.6 dihydroorotase compare
Atu1307 -2.2 -6.6 dihydroorotase compare
Atu0298 -2.0 -8.8 orotidine 5 compare
Atu2289 -2.0 -11.1 anthranilate synthase component I and II compare
Atu0434 -2.0 -2.9 2'-deoxycytidine 5'-triphosphate deaminase compare
Atu1308 -1.9 -6.7 aspartate carbamoyl transferase catalytic subunit compare
Atu1688 -1.9 -3.7 indole-3-glycerol-phosphate synthase compare
Atu0346 -1.8 -5.1 uridylyltransferase/uridylyl-removing enzyme UTase compare
Atu8138 -1.8 -2.7 hypothetical protein compare
Atu0486 -1.8 -5.4 dihydroorotate dehydrogenase compare
Atu0400 -1.7 -5.6 orotate phosphoribosyltransferase compare
Atu1446 -1.7 -3.3 two component response regulator compare
Atu2554 -1.6 -3.0 lysyl-tRNA synthetase compare
Atu0103 -1.6 -9.2 penicillin-binding protein compare
Atu0184 -1.4 -3.2 glucokinase compare
Atu1163 -1.4 -2.3 exopolysaccharide II synthesis transcriptional activator ExpG compare
Atu0031 -1.4 -2.0 PTS system, IIA component compare
Atu1850 -1.4 -2.8 phosphoribosylformylglycinamidine synthetase II compare
Atu1686 -1.3 -7.1 peptidyl-prolyl cis-trans isomerse D compare
Atu2787 -1.3 -1.4 hypothetical protein compare
Atu2710 -1.2 -5.5 hypothetical protein compare
Atu3754 -1.2 -5.7 phosphoribosylaminoimidazole carboxylase catalytic subunit compare
Atu3469 -1.2 -1.8 phosphoglyceromutase compare
Atu1685 -1.2 -1.2 hypothetical protein compare
Atu0777 -1.2 -1.2 hypothetical protein compare
Atu0361 -1.1 -3.2 transcriptional regulator compare
Atu1028 -1.1 -1.6 hypothetical protein compare
Atu2684 -1.1 -1.7 hypothetical protein compare
Atu0319 -1.1 -1.6 ubiquinone biosynthesis protein compare
Atu1845 -1.1 -4.4 phosphoribosylformylglycinamidine synthase I compare
Atu3739 -1.1 -2.7 phosphoglycerate kinase compare
Atu4773 -1.1 -2.2 two component response regulator compare
Atu1588 -1.0 -6.5 homoserine dehydrogenase compare
Atu4075 -1.0 -4.8 glycogen synthase compare
Atu0972 -1.0 -4.3 lipA protein compare
Atu4317 -1.0 -2.0 TetR family transcriptional regulator compare
Atu1075 -1.0 -4.9 amidophosphoribosyltransferase compare
Atu2728 -1.0 -3.6 beta (1-->2) glucan export ATP-binding protein compare
Atu1141 -0.9 -4.6 Phosphoribosylglycinamide synthetase compare
Atu3706 -0.9 -4.6 D-3-phosphoglycerate dehydrogenase compare
Atu2113 -0.9 -2.5 N-acetylmuramoyl-L-alanine amidase compare
Atu1542 -0.9 -4.6 Bifunctional adenosylcobalamin biosynthesis protein cobP compare
Atu0598 -0.9 -4.4 phosphogluconate dehydratase compare
Atu0185 -0.9 -2.8 methylglyoxal synthase compare
Atu3668 -0.8 -2.4 siderophore biosynthesis protein compare
Atu1077 -0.8 -2.0 DNA repair protein compare
Atu3727 -0.8 -1.9 hypothetical protein compare
Atu8168 -0.8 -3.1 hypothetical protein compare
Atu1844 -0.8 -1.7 Phosphoribosylformylglycinamidine synthetase compare
Atu2040 -0.8 -3.8 phosphoserine phosphatase compare
Atu2809 -0.8 -4.3 cobalamin biosynthesis protein compare
Atu4882 -0.8 -2.5 hypothetical protein compare
Atu0276 -0.8 -2.2 hypothetical protein compare
Atu2249 -0.8 -1.1 hypothetical protein compare
Atu1140 -0.8 -2.4 phosphoribosyalaminoimidazole-succinocarboxamide synthase compare
Atu0846 -0.7 -3.4 transcriptional regulator, MarR family compare
Atu0421 -0.7 -1.2 ABC transporter, membrane spanning protein compare
Atu2802 -0.7 -4.3 precorrin-8X methylmutase compare
Atu0647 -0.7 -3.2 phosphoribosylamine--glycine ligase compare
Atu3755 -0.7 -3.5 phosphoribosylaminoimidazole carboxylase ATPase subunit compare
Atu3730 -0.7 -1.3 hypothetical protein compare
Atu2192 -0.7 -1.2 hypothetical protein compare
Atu1760 -0.7 -1.2 hypothetical protein compare
Atu3392 -0.7 -3.0 methyltransferase compare
Atu2804 -0.7 -4.9 cobaltochelatase subunit compare
Atu0029 -0.7 -2.8 S-adenosylhomocysteine hydrolase compare
Atu0640 -0.7 -1.5 hypothetical protein compare
Atu1891 -0.7 -1.8 cobalamin biosynthesis protein compare
Atu1225 -0.7 -1.6 hypothetical protein compare
Atu2808 -0.7 -3.2 cobyric acid synthase compare
Atu8202 -0.7 -2.5 hypothetical protein compare
Atu1355 -0.6 -3.0 hypothetical protein compare
Atu0638 -0.6 -1.4 hypothetical protein compare
Atu1182 -0.6 -1.9 hypothetical protein compare
Atu0149 -0.6 -2.0 enoyl-(acyl-carrier-protein) reductase compare
Atu4148 -0.6 -2.2 UDP-glucuronic acid epimerase compare
Atu2805 -0.6 -4.3 cobalamin synthesis protein compare
Atu0723 -0.6 -1.5 FAD dependent oxidoreductase compare
Atu2207 -0.6 -2.9 two component sensor kinase compare
Atu0726 -0.6 -3.2 ring hydroxylating dioxygenase, alpha-subunit compare
Atu1435 -0.6 -2.4 hypothetical protein compare
Atu4418 -0.6 -2.1 glutaryl-CoA dehydrogenase compare
Atu5513 -0.6 -1.5 cold shock protein compare
Atu2799 -0.6 -2.3 precorrin-6x reductase compare
Atu1619 -0.6 -2.3 protein-export membrane protein SECG compare
Atu2127 -0.6 -3.5 L-carnitine dehydratase compare
Atu1620 -0.6 -4.2 triosephosphate isomerase compare
Atu2036 -0.6 -4.5 acetolactate synthase III, large subunit compare
Atu4470 -0.6 -3.7 iron ABC transporter ATPase compare
Atu1774 -0.5 -2.8 ABC transporter, substrate binding protein (peptide) compare
Atu1009 -0.5 -1.5 hypothetical protein compare
Atu3121 -0.5 -1.0 cold shock protein compare
Atu2800 -0.5 -1.9 precorrin-3B C17-methyltransferase compare
Atu4711 -0.5 -2.5 two component sensor kinase compare
Atu0495 -0.5 -2.3 hypothetical protein compare
Atu2798 -0.5 -2.3 precorrin-6y methyltransferase compare
Atu0237 -0.5 -2.4 hypothetical protein compare
Atu5125 -0.5 -2.4 GntR family transcriptional regulator compare
Atu3482 -0.5 -1.8 pantoate--beta-alanine ligase compare
Atu2502 -0.5 -2.1 heme oxygenase compare
Atu3707 -0.5 -1.6 phosphoserine aminotransferase compare
Atu2807 -0.5 -2.9 cob(I)alamin adenosyltransferase compare
Atu8118 -0.5 -2.0 putative universal stress protein compare
Atu0025 -0.5 -1.5 hypothetical protein compare
Atu6036 -0.5 -0.7 entry-exclusion protein compare
Atu1736 -0.5 -2.3 manganese transport protein compare
Atu5164 -0.5 -0.6 type IV secretion protein AvhB3 compare
Atu1475 -0.5 -1.6 hypothetical protein compare
Atu0727 -0.5 -3.1 ferredoxin I compare
Atu2793 -0.5 -2.0 cobyrinic acid a,c-diamide synthase compare
Atu3466 -0.5 -1.3 ArsR family transcriptional regulator compare
Atu4108 -0.5 -2.5 ribonuclease D compare
Atu2555 -0.5 -1.5 L-lysine 2,3-aminomutase compare
Atu4873 -0.5 -3.3 TetR family transcriptional regulator compare
Atu2368 -0.5 -0.8 hypothetical protein compare
Atu1503 -0.5 -0.7 hypothetical protein compare
Atu2057 -0.5 -1.2 DNA helicase II compare
Atu0995 -0.5 -2.9 hypothetical protein compare
Atu3353 -0.5 -3.0 mannose-1-phosphate guanylyltransferase compare
Atu6114 -0.5 -0.8 hypothetical protein compare
Atu8195 -0.5 -1.2 hypothetical protein compare
Atu1346 -0.5 -2.2 phenazine antibiotic biosynthesis related protein compare
Atu3036 -0.5 -2.5 dipeptide ABC transporter permease compare
Atu2794 -0.5 -2.0 uroporphyrin-III C-methyltransferase compare
Atu4171 -0.5 -2.9 cold-shock dead-box protein A compare
Atu2832 -0.5 -1.9 tRNA modification GTPase compare
Atu1176 -0.5 -1.9 hypothetical protein compare
Atu2801 -0.5 -1.7 precorrin-2 C20 methyltransferase compare
Atu2125 -0.5 -0.7 ABC transporter, nucleotide binding/ATPase protein compare
Atu4893 -0.4 -1.8 hypothetical protein compare
Atu0533 -0.4 -1.3 putative inhibitor of septum formation compare
Atu0115 -0.4 -0.6 hypothetical protein compare
Atu4137 -0.4 -2.0 hypothetical protein compare
Atu2073 -0.4 -1.7 membrane protein compare
Atu0181 -0.4 -1.8 hypothetical protein compare
Atu2650 -0.4 -3.2 glycerol-3-phosphate dehydrogenase compare
Atu0188 -0.4 -1.2 ABC transporter, membrane spanning protein (peptide) compare
Atu1364 -0.4 -2.4 ATP-dependent Clp protease, ATP-binding subunit compare
Atu0040 -0.4 -0.2 phosphoribosylformino-5-aminoimidazole carboxamide ribotide isomerase compare
Atu1779 -0.4 -1.2 hypothetical protein compare
Atu0038 -0.4 -1.2 phosphoribosyl-ATP pyrophosphohydrolase compare
Atu8159 -0.4 -1.5 hypothetical protein compare
Atu1570 -0.4 -0.6 hypothetical protein compare
Atu5470 -0.4 -0.8 hypothetical protein compare
Atu2796 -0.4 -2.0 precorrin-4 C11-methyltransferase compare
Atu1074 -0.4 -2.5 NAD/NADP dependent oxidoreductase compare
Atu0041 -0.4 -0.8 glutamine amidotransferase compare
Atu2640 -0.4 -1.5 hypothetical protein compare
Atu0190 -0.4 -2.4 ABC transporter, nucleotide binding/ATPase protein (peptide) compare
Atu4419 -0.4 -2.3 LysR family transcriptional regulator compare
Atu1624 -0.4 -2.2 transcriptional regulator, TetR family compare
Atu0182 -0.4 -1.6 transcriptional regulator, GntR family compare
Atu8161 -0.4 -0.7 hypothetical protein compare
Atu1464 -0.4 -2.6 glycine cleavage system T protein, aminomethyltransferase compare
Atu2349 -0.4 -1.1 hypothetical protein compare
Atu3910 -0.4 -2.0 LamB/YcsF family protein compare
Atu2489 -0.4 -2.8 hypothetical protein compare
Atu1525 -0.4 -1.8 hypothetical protein compare
Atu0922 -0.4 -1.8 hypothetical protein compare
Atu0771 -0.4 -2.2 cytochrome c oxidase subunit III compare
Atu1874 -0.4 -0.9 RecA protein compare
Atu4894 -0.4 -2.3 transposase compare
Atu1739 -0.4 -1.7 permease compare
Atu3006 -0.4 -1.8 hypothetical protein compare
Atu1149 -0.4 -0.5 adenylate cyclase compare
Atu1455 -0.4 -1.5 hypothetical protein compare
Atu2548 -0.4 -3.0 phosphoribosylaminoimidazole-succinocarboxamide synthase compare
Atu3485 -0.4 -2.6 short chain dehydrogenase compare
Atu2346 -0.4 -2.6 ABC transporter, membrane spanning protein (sugar) compare
Atu1722 -0.4 -1.4 hypothetical protein compare
Atu0971 -0.4 -1.9 two component sensor kinase compare
Atu0854 -0.4 -1.5 hypothetical protein compare
Atu0485 -0.4 -1.5 hypothetical protein compare
Atu0977 -0.4 -2.0 serine protease DO-like protease compare
Atu8176 -0.4 -1.0 hypothetical protein compare
Atu3776 -0.4 -1.8 hypothetical protein compare
Atu0101 -0.4 -2.0 cytochrome c compare
Atu3429 -0.4 -0.8 hypothetical protein compare
Atu8094 -0.4 -1.6 hypothetical protein compare
Atu2239 -0.4 -1.4 ubiquinol-cytochrome C reductase iron-sulfur subunit compare
Atu3020 -0.4 -2.5 GntR family transcriptional regulator compare
Atu4214 -0.4 -1.6 cold shock protein compare
Atu3075 -0.4 -2.6 TetR family transcriptional regulator compare
Atu3864 -0.4 -1.8 hypothetical protein compare
Atu8020 -0.4 -1.9 hypothetical protein compare
Atu0062 -0.4 -2.2 transcriptional regulator, ROK family compare
Atu1468 -0.4 -2.2 hypothetical protein compare
Atu8012 -0.4 -0.7 hypothetical protein compare
Atu2766 -0.4 -3.2 NAD-glutamate dehydrogenase compare
Atu0627 -0.4 -2.2 carboxymethylenebutenolidase compare
Atu0931 -0.4 -2.5 penicillin binding protein compare
Atu4245 -0.4 -2.1 polyamine ABC transporter permease compare
Atu2795 -0.4 -2.2 cobalamin biosynthetic protein compare
Atu3427 -0.4 -1.3 hypothetical protein compare
Atu0689 -0.4 -2.9 ribosomal large subunit pseudouridine synthase B compare
Atu1467 -0.4 -1.3 hypothetical protein compare
Atu0722 -0.4 -1.9 hypothetical protein compare
Atu1333 -0.4 -1.2 outer membrane protein compare


Specific Phenotypes

None in this experiment

For Agrobacterium fabrum C58 in r2a_control experiments