Experiment set59S85 for Escherichia coli BW25113
Outgrowth from conjugation with pRH23 in LB+Gent50
Group: dartMedia: + Plasmid=pRH23; outgrowth=LB_Gent50
Culturing: Keio_ML9a
By: Robin on
Specific Phenotypes
For 8 genes in this experiment
For dart Plasmid=pRH23; outgrowth=LB_Gent50 in Escherichia coli BW25113
For dart Plasmid=pRH23; outgrowth=LB_Gent50 across organisms
SEED Subsystems
| Subsystem | #Specific |
|---|---|
| Arginine and Ornithine Degradation | 5 |
| D-gluconate and ketogluconates metabolism | 1 |
| Lactose utilization | 1 |
Metabolic Maps
Color code by fitness: see overview map or list of maps.
Maps containing gene(s) with specific phenotypes:
- Arginine and proline metabolism
- Fatty acid biosynthesis
- Lysine degradation
- Histidine metabolism
- Tyrosine metabolism
- Phenylalanine metabolism
- Lipopolysaccharide biosynthesis
- Glycerophospholipid metabolism
- Ether lipid metabolism
- Glycosphingolipid biosynthesis - ganglio series
- 1- and 2-Methylnaphthalene degradation
- Benzoate degradation via CoA ligation
- Ethylbenzene degradation
- Butanoate metabolism
- Limonene and pinene degradation
- Diterpenoid biosynthesis
- Carotenoid biosynthesis - General
- Anthocyanin biosynthesis
- Alkaloid biosynthesis I
- Alkaloid biosynthesis II
- Biosynthesis of unsaturated fatty acids
- Biosynthesis of type II polyketide backbone
- Biosynthesis of terpenoids and steroids
MetaCyc Pathways
Pathways that contain genes with specific phenotypes:
| Pathway | #Steps | #Present | #Specific |
|---|---|---|---|
| L-arginine degradation II (AST pathway) | 5 | 5 | 5 |
| L-ornithine biosynthesis I | 5 | 5 | 1 |
| L-arginine biosynthesis I (via L-ornithine) | 9 | 9 | 1 |
| L-arginine biosynthesis III (via N-acetyl-L-citrulline) | 9 | 8 | 1 |
| L-arginine biosynthesis II (acetyl cycle) | 10 | 9 | 1 |
| superpathway of arginine and polyamine biosynthesis | 17 | 16 | 1 |