Experiment set58S207 for Pseudomonas putida KT2440

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biofilm mediium PDMS; 7 hours

200 most important genes:

  gene name fitness t score description  
PP_4356 -5.1 -5.0 Flagellar protein FliO compare
PP_0164 -4.9 -3.4 conserved protein of unknown function compare
PP_4902 -4.8 -3.3 Oligoribonuclease compare
PP_5309 -4.5 -10.4 oxidative and nitrosative stress transcriptional dual regulator compare
PP_0127 -4.3 -5.8 Thiol:disulfide interchange protein compare
PP_0082 -3.2 -2.2 tryptophan synthase alpha chain compare
PP_0083 -3.1 -3.0 tryptophan synthase beta chain compare
PP_0959 -3.0 -4.0 phospholipid ABC transporter compare
PP_4354 -2.9 -4.8 flagellar export apparatus subunit compare
PP_4008 -2.8 -5.3 ATP-dependent serine protease compare
PP_4353 -2.8 -5.4 Flagellar biosynthetic protein fliR compare
PP_0888 -2.7 -3.6 Photosynthetic apparatus regulatory protein RegA compare
PP_0218 -2.7 -9.1 Sensory box protein compare
PP_4391 -2.6 -6.6 flagellar basal-body rod protein FlgB compare
PP_4369 -2.6 -7.1 Flagellar M-ring protein compare
PP_4942 -2.5 -3.7 conserved protein of unknown function compare
PP_0833 -2.4 -3.2 queuine tRNA-ribosyltransferase compare
PP_4358 -2.4 -6.3 flagellar synthesis, switching and energizing component compare
PP_1493 -2.3 -4.0 chemotaxis response regulator protein-glutamate methylesterase of group 3 operon compare
PP_4375 -2.3 -9.3 flagellar chaperone, inhibits premature FliC assembly compare
PP_4344 -2.3 -10.3 flagellar export pore protein compare
PP_4368 -2.3 -6.0 flagellar motor switch protein compare
PP_4366 -2.3 -10.4 flagellum-specific ATP synthase compare
PP_4943 -2.3 -3.0 putative Glycosyl transferase compare
PP_3541 -2.3 -3.7 Transporter, MgtC family compare
PP_1898 -2.2 -3.2 MotA/TolQ/ExbB proton channel family protein compare
PP_0856 -2.2 -5.6 conserved lipoprotein of unknown function compare
PP_3821 -2.2 -8.3 UTP-glucose-1-phosphate uridylyltransferase compare
PP_4895 -2.1 -4.2 tRNA dimethylallyltransferase compare
PP_4367 -2.1 -3.5 Flagellar assembly protein FliH compare
PP_4700 -2.1 -3.5 pantothenate synthetase compare
PP_4352 -2.1 -8.9 flagellin export apparatus, substrate specificity protein compare
PP_4381 -2.1 -10.7 Flagellar hook-associated protein FlgK compare
PP_0422 -2.1 -3.7 Indole-3-glycerol phosphate synthase compare
PP_4386 -2.1 -5.6 flagellar basal-body rod protein FlgF compare
PP_4370 -2.1 -3.9 Flagellar hook-basal body complex protein FliE compare
PP_4341 -2.1 -6.4 RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons compare
PP_4693 -2.1 -4.6 RNA polymerase-binding transcription factor DksA compare
PP_0962 -2.1 -3.6 toluene-tolerance protein compare
PP_1995 -2.0 -5.9 N-(5'-phosphoribosyl)anthranilate isomerase compare
PP_4388 -2.0 -9.4 Flagellar hook protein FlgE compare
PP_4098 -2.0 -2.9 UvrABC system protein C compare
PP_4909 -2.0 -6.5 phosphoserine phosphatase compare
PP_4993 -2.0 -5.7 Glutathione synthetase compare
PP_2145 -2.0 -3.9 beta-N-acetylglucosaminidase compare
PP_4382 -2.0 -6.3 Peptidoglycan hydrolase FlgJ compare
PP_4384 -1.9 -7.7 Flagellar L-ring protein compare
PP_4376 -1.9 -9.9 flagellar filament capping protein compare
PP_4361 -1.9 -5.4 Flagellar hook-length control protein FliK compare
PP_0362 -1.9 -9.4 Biotin synthase compare
PP_2087 -1.8 -2.5 CmpX protein compare
PP_1428 -1.8 -3.2 Sigma factor AlgU negative regulatory protein compare
PP_0393 -1.8 -3.4 putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase compare
PP_0366 -1.8 -6.5 dethiobiotin synthetase compare
PP_4994 -1.8 -4.0 conserved protein of unknown function compare
PP_4390 -1.8 -5.2 flagellar basal-body rod protein FlgC compare
PP_4380 -1.8 -9.2 Flagellar hook-associated protein FlgL compare
PP_4365 -1.8 -2.8 Flagellar protein FliJ compare
PP_0363 -1.7 -8.0 8-amino-7-oxononanoate synthase compare
PP_4355 -1.7 -2.0 flagellar export apparatus subunit compare
PP_0958 -1.7 -6.9 phospholipid ABC transporter ATP-binding subunit compare
PP_4984 -1.7 -8.4 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase compare
PP_4385 -1.7 -5.8 flagellar basal-body rod protein FlgG compare
PP_4378 -1.7 -10.1 flagellin, filament structural protein compare
PP_5084 -1.7 -8.1 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase compare
PP_0339 -1.7 -3.1 Pyruvate dehydrogenase E1 component compare
PP_0364 -1.7 -7.3 pimeloyl-[acp] methyl ester esterase compare
PP_0417 -1.6 -9.2 Anthranilate synthase component 1 compare
PP_4383 -1.6 -3.9 Flagellar P-ring protein compare
PP_4824 -1.6 -6.9 Sensor histidine kinase/response regulator compare
PP_4937 -1.6 -3.5 toluene tolerance protein compare
PP_0809 -1.6 -7.2 disulfide bond formation protein B compare
PP_0832 -1.6 -3.9 S-adenosylmethionine:tRNA ribosyltransferase-isomerase compare
PP_5329 -1.5 -2.3 putative phosphate ABC transporter, periplasmic phosphate-binding protein compare
PP_2847 -1.5 -1.6 Urease accessory protein UreJ compare
PP_2144 -1.5 -3.6 Transcriptional regulator, TetR family compare
PP_0434 -1.5 -4.8 Anhydro-N-acetylmuramic acid kinase compare
PP_5216 -1.5 -2.9 exopolyphosphatase compare
PP_2299 -1.5 -2.8 Trigger factor compare
PP_1623 -1.5 -7.2 RNA polymerase, sigma S (sigma 38) factor compare
PP_3938 -1.5 -2.7 conserved protein of unknown function compare
PP_0914 -1.5 -7.5 GGDEF domain protein compare
PP_0855 -1.5 -2.7 conserved protein of unknown function compare
PP_0365 -1.5 -6.1 Malonyl-[acyl-carrier protein] O-methyltransferase compare
PP_4389 -1.4 -4.2 Flagellar basal-body rod modification protein FlgD compare
PP_5456 -1.4 -2.4 conserved protein of unknown function compare
PP_1269 -1.4 -1.5 Universal stress protein family compare
PP_2060 -1.4 -2.1 DNA-binding transcriptional dual regulator - SoxR-reversible one-electron oxidation of its [2Fe-2S] cluster, NADPH-dependent compare
PP_4988 -1.3 -5.0 signal transduction histidine kinase CheA/CheY-like receiver compare
PP_4364 -1.3 -4.3 putative Anti-sigma F factor antagonist compare
PP_4131 -1.3 -4.9 NADH-quinone oxidoreductase subunit N compare
PP_4471 -1.3 -3.7 Magnesium transporter compare
PP_5621 -1.3 -1.4 protein of unknown function compare
PP_1355 -1.3 -6.6 Muropeptide permease AmpG compare
PP_4847 -1.3 -2.0 chaperone modulatory of CbpA co-chaperone protein compare
PP_4204 -1.3 -3.7 antitoxin of the type II toxin-antitoxin MqsRA system and DNA-binding transcriptional repressor compare
PP_0960 -1.2 -4.3 phospholipid ABC transporter binding protein compare
PP_5652 -1.2 -2.4 conserved protein of unknown function, phage origin compare
PP_2414 -1.2 -1.8 conserved exported protein of unknown function compare
PP_5528 -1.2 -1.8 conserved protein of unknown function compare
PP_0945 -1.2 -3.0 conserved protein of unknown function compare
PP_0957 -1.2 -1.6 D-arabinose 5-phosphate isomerase compare
PP_t29 -1.2 -2.0 tRNA-Ala compare
PP_0556 -1.1 -3.6 Acetoin catabolism protein compare
PP_1198 -1.1 -2.3 transcriptional regulator, Cro/CI family (higA antitoxin like) compare
PP_0831 -1.1 -4.3 hypothetical protein compare
PP_0290 -1.1 -5.3 Imidazole glycerol phosphate synthase subunit HisH compare
PP_0065 -1.1 -3.1 NAD-binding component of TrK potassium transporter compare
PP_3075 -1.1 -2.4 putative transcriptional regulator compare
PP_4129 -1.1 -2.9 NADH:ubiquinone oxidoreductase, membrane subunit L compare
PP_0593 -1.1 -1.2 putative ribosome-binding factor compare
PP_0401 -1.1 -2.4 Ribosomal RNA small subunit methyltransferase A compare
PP_5445 -1.1 -1.5 conserved protein of unknown function compare
PP_1364 -1.0 -6.0 conserved exported protein of unknown function compare
PP_4396 -1.0 -2.4 conserved protein of unknown function compare
PP_4394 -1.0 -2.4 flagella basal body P-ring formation protein compare
PP_2153 -1.0 -3.3 conserved protein of unknown function compare
PP_2031 -1.0 -2.5 conserved protein of unknown function compare
PP_2766 -1.0 -4.0 Long-chain-fatty-acid--CoA ligase-related protein compare
PP_4546 -1.0 -3.5 ATP-dependent helicase HrpA compare
PP_4591 -1.0 -2.7 Ribonuclease D compare
PP_0292 -1.0 -3.3 1-(5-phosphoribosyl)-5-((5-phosphoribosylamino)methylideneamino)imidazole-4-carboxamide isomerase (EC 5.3.1.16) (from data) compare
PP_4004 -1.0 -2.6 DNA translocase FtsK compare
PP_5248 -1.0 -0.9 putative hydrolase compare
PP_4343 -1.0 -3.0 Flagellar biosynthesis protein FlhF compare
PP_4874 -1.0 -2.0 50S ribosomal protein L9 compare
PP_5748 -1.0 -0.8 cytochrome c heme lyase subunit compare
PP_0789 -1.0 -3.3 N-acetyl-anhydromuramyl-L-alanine-amidase compare
PP_2090 -1.0 -2.3 Uroporphyrinogen-III C-methyltransferase compare
PP_0405 -1.0 -4.5 conserved protein of unknown function compare
PP_5155 -1.0 -3.7 D-3-phosphoglycerate dehydrogenase / alpha-ketoglutarate reductase compare
PP_2442 -1.0 -2.1 conserved protein of unknown function, DUF480 family compare
PP_4726 -1.0 -1.8 Chaperone protein DnaJ compare
PP_2677 -0.9 -1.8 conserved exported protein of unknown function compare
PP_5SB -0.9 -2.4 5S ribosomal RNA compare
PP_2214 -0.9 -2.5 3-hydroxyacyl-CoA dehydrogenase type-2 compare
PP_5313 -0.9 -1.4 DNA-binding protein HU-alpha compare
PP_1764 -0.9 -1.8 Phosphoglycolate phosphatase 2 compare
PP_1176 -0.9 -1.0 conserved protein of unknown function compare
PP_4373 -0.9 -5.3 Transcriptional regulator FleQ compare
PP_1763 -0.9 -2.6 putative oxidoreductase compare
PP_2402 -0.9 -1.5 putative Sensor histidine kinase compare
PP_t10 -0.9 -2.0 tRNA-Pro compare
PP_3241 -0.9 -1.1 conserved exported protein of unknown function compare
PP_5552 -0.9 -1.5 conserved protein of unknown function compare
PP_4723 -0.9 -2.1 Carbamoyl-phosphate synthase large chain compare
PP_0565 -0.9 -3.5 putative enzyme compare
PP_1690 -0.9 -1.9 conserved protein of unknown function compare
PP_4120 -0.9 -2.6 NADH-quinone oxidoreductase subunit B compare
PP_2403 -0.9 -1.3 Chemotaxis protein CheY compare
PP_4213 -0.9 -1.8 putative dipeptidase compare
PP_1294 -0.9 -3.3 molybdopterin synthase large subunit compare
PP_2330 -0.9 -2.4 conserved protein of unknown function compare
PP_3447 -0.9 -1.3 conserved membrane protein of unknown function compare
PP_5007 -0.9 -2.2 Polyhydroxyalkanoate granule-associated protein GA2 compare
PP_0421 -0.9 -3.8 Anthranilate phosphoribosyltransferase compare
PP_4130 -0.9 -2.5 NADH:ubiquinone oxidoreductase, membrane subunit M compare
PP_5114 -0.9 -1.8 putative adenine methyltransferase compare
PP_1187 -0.9 -4.5 sensor protein compare
PP_2309 -0.9 -1.0 conserved protein of unknown function compare
PP_1087 -0.9 -5.0 Outer membrane protein, OmpA family compare
PP_5644 -0.9 -2.4 conserved membrane protein of unknown function compare
PP_4094 -0.9 -1.6 conserved protein of unknown function compare
PP_3314 -0.9 -2.1 Heat shock protein, HSP20 family compare
PP_4917 -0.9 -2.5 3',5'-cyclic-nucleotide phosphodiesterase compare
PP_2307 -0.9 -1.7 conserved protein of unknown function compare
PP_3522 -0.9 -2.4 conserved protein of unknown function compare
PP_2378 -0.8 -1.7 Fe/S biogenesis protein NfuA compare
PP_4335 -0.8 -4.8 flagellar motor protein compare
PP_1232 -0.8 -3.0 conserved exported protein of unknown function compare
PP_5422 -0.8 -2.6 hypothetical protein compare
PP_5331 -0.8 -2.9 Long-chain acyl-CoA thioester hydrolase compare
PP_4337 -0.8 -3.1 chemotaxis response regulator protein-glutamate methylesterase of group 1 operon compare
PP_2575 -0.8 -0.8 conserved exported protein of unknown function compare
PP_4964 -0.8 -2.3 D-erythrose 4-phosphate dehydrogenase compare
PP_5337 -0.8 -2.6 LysR family transcriptional regulator compare
PP_1325 -0.8 -4.6 putative lipoprotein compare
PP_4126 -0.8 -1.1 NADH-quinone oxidoreductase subunit I compare
PP_4073 -0.8 -1.1 conserved exported protein of unknown function compare
PP_5232 -0.8 -1.7 conserved protein of unknown function compare
PP_2794 -0.8 -1.0 Oxidoreductase, short chain dehydrogenase/reductase family compare
PP_0484 -0.8 -3.7 transporter of an unknown substrate compare
PP_0725 -0.8 -3.6 conserved hypothetical TPR repeat protein compare
PP_2123 -0.8 -4.1 molybdenum::molybdopterin ligase compare
PP_3295 -0.8 -2.5 YeeE/YedE family protein compare
PP_4479 -0.8 -3.5 arginine N-succinyltransferase, subunit beta compare
PP_4199 -0.8 -0.8 putative Lipoprotein compare
PP_1216 -0.8 -1.6 Holliday junction ATP-dependent DNA helicase RuvA compare
PP_5594 -0.8 -1.6 conserved protein of unknown function compare
PP_2597 -0.8 -2.3 conserved protein of unknown function compare
PP_0683 -0.7 -2.1 conserved protein of unknown function compare
PP_2029 -0.7 -1.6 von Willebrand factor type A domain protein compare
PP_2030 -0.7 -2.9 conserved protein of unknown function compare
PP_3145 -0.7 -3.0 conserved protein of unknown function compare
PP_2769 -0.7 -3.3 putative Branched-chain amino acid ABC transporter, permease protein compare
PP_1439 -0.7 -1.2 conserved exported protein of unknown function compare
PP_2302 -0.7 -2.8 DNA-binding, ATP-dependent protease compare
PP_0293 -0.7 -1.8 Imidazole glycerol phosphate synthase subunit HisF compare
PP_5471 -0.7 -1.4 putative response regulator receiver protein compare
PP_0633 -0.7 -1.9 Type 4 fimbrial assembly protein PilC compare


Specific Phenotypes

For 2 genes in this experiment