Experiment set57IT051 for Escherichia coli BW25113

Compare to:

Ying_Nucleobase14 rep C; time point 3

Genes with specific phenotypes:

  gene name fitness t score description  
b4383 deoB -8.2 -8.0 phosphopentomutase (NCBI) conserved
b2964 nupG -3.6 -15.5 transport of nucleosides, permease protein (VIMSS) compare
b2290 yfbQ -3.5 -14.6 aspartate aminotransferase (NCBI) compare
b3831 udp -3.2 -13.5 uridine phosphorylase (NCBI) conserved
b1784 yeaH -3.0 -9.6 yeaH component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) compare
b1188 ycgB -2.9 -10.5 ycgB component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) compare
b1285 gmr -2.9 -6.6 modulator of Rnase II stability (NCBI) compare
b1783 yeaG -2.8 -10.0 yeaG component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) compare
b2393 nupC -2.3 -9.7 nucleoside (except guanosine) transporter (NCBI) conserved
b2603 yfiR -2.0 -9.3 hypothetical protein (NCBI) compare
b3601 mtlR -1.9 -7.7 DNA-binding repressor (NCBI) compare
b0964 yccT -1.8 -7.5 hypothetical protein (NCBI) compare
b0863 artI -1.7 -7.4 arginine transporter subunit (NCBI) compare
b3908 sodA -1.7 -10.0 superoxide dismutase, manganese (VIMSS) compare
b1660 ydhC -1.7 -5.6 predicted transporter (NCBI) conserved
b3385 gph -1.6 -11.9 phosphoglycolate phosphatase (NCBI) compare
b1422 ydcI -1.6 -5.3 putative transcriptional regulator LYSR-type (VIMSS) compare
b2707 srlR -1.6 -6.2 DNA-bindng transcriptional repressor (NCBI) compare
b4395 ytjC -1.5 -7.0 phosphoglycerate mutase (NCBI) compare
b4384 deoD -1.5 -10.3 purine nucleoside phosphorylase (NCBI) conserved
b0469 apt -1.2 -6.4 adenine phosphoribosyltransferase (NCBI) compare
b0223 yafJ -1.1 -7.8 predicted amidotransfease (NCBI) compare
b1687 ydiJ -1.1 -7.8 predicted FAD-linked oxidoreductase (NCBI) compare
b1489 b1489 -1.1 -6.9 putative enzyme (VIMSS) compare
b4324 uxuR -1.1 -7.4 DNA-binding transcriptional repressor (NCBI) compare
b2151 galS -1.0 -5.7 DNA-binding transcriptional repressor (NCBI) conserved
b2303 folX +1.0 7.0 D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase and dihydroneopterin aldolase (NCBI) compare
b4135 yjdC +1.0 6.2 orf, hypothetical protein (VIMSS) compare
b1042 csgA +1.1 6.7 cryptic curlin major subunit (NCBI) compare
b4190 yjfP +1.1 6.7 predicted hydrolase (NCBI) compare
b2067 yegE +1.1 9.3 predicted diguanylate cyclase, GGDEF domain signalling protein (NCBI) compare
b4256 yjgM +1.1 9.2 predicted acetyltransferase (NCBI) compare
b4109 yjdA +1.1 10.0 conserved protein with nucleoside triphosphate hydrolase domain (NCBI) compare
b4380 yjjI +1.2 5.0 hypothetical protein (NCBI) compare
b2042 galF +1.2 8.6 predicted subunit with GalU (NCBI) compare
b1341 b1341 +1.2 8.2 orf, hypothetical protein (VIMSS) compare
b4110 yjcZ +1.3 9.4 orf, hypothetical protein (VIMSS) compare
b0852 rimK +1.4 8.0 ribosomal protein S6 modification protein (NCBI) compare
b4391 yjjK +1.4 11.9 fused predicted transporter subunits of ABC superfamily: ATP-binding components (NCBI) compare
b2127 mlrA +1.9 12.6 DNA-binding transcriptional regulator (NCBI) compare
b1663 mdtK +2.0 6.9 multidrug efflux protein NorM (NCBI) compare
b4260 pepA +2.6 23.7 leucyl aminopeptidase (NCBI) compare
b1190 dadX +3.0 21.5 alanine racemase (NCBI) compare
b2101 yegW +3.7 28.2 predicted DNA-binding transcriptional regulator (NCBI) compare
b3934 cytR +4.3 37.6 DNA-binding transcriptional dual regulator (NCBI) conserved


Specific phenotypes for carbon source Ying_Nucleobase14 across organisms