Experiment set57IT048 for Escherichia coli BW25113

Compare to:

Ying_sugar7 rep C; time point 3

200 most important genes:

  gene name fitness t score description  
b1260 trpA -10.8 -6.3 tryptophan synthase subunit alpha (NCBI) compare
b2020 hisD -9.5 -6.6 histidinol dehydrogenase (NCBI) compare
b2414 cysK -9.5 -6.6 cysteine synthase A, O-acetylserine sulfhydrolase A subunit (NCBI) compare
b4245 pyrB -9.4 -6.5 aspartate carbamoyltransferase catalytic subunit (NCBI) compare
b3958 argC -9.4 -6.5 N-acetyl-gamma-glutamyl-phosphate reductase (NCBI) compare
b2026 hisI -9.4 -6.5 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein (NCBI) compare
b3941 metF -9.4 -9.2 5,10-methylenetetrahydrofolate reductase (NCBI) compare
b2750 cysC -9.4 -6.5 adenylylsulfate kinase (NCBI) compare
b4013 metA -9.3 -6.4 homoserine O-succinyltransferase (NCBI) compare
b0072 leuC -9.3 -6.4 isopropylmalate isomerase large subunit (NCBI) compare
b2818 argA -9.3 -6.4 N-acetylglutamate synthase (NCBI) compare
b0907 serC -9.2 -6.3 phosphoserine aminotransferase (NCBI) compare
b2839 lysR -9.2 -6.3 DNA-binding transcriptional dual regulator (NCBI) compare
b2476 purC -9.1 -4.4 phosphoribosylaminoimidazole-succinocarboxamidesynthase (NCBI) compare
b0073 leuB -9.1 -6.3 3-isopropylmalate dehydrogenase (VIMSS) compare
b0033 carB -9.1 -6.3 carbamoyl-phosphate synthase large subunit (NCBI) compare
b3774 ilvC -9.0 -6.3 ketol-acid reductoisomerase (NCBI) compare
b2600 tyrA -9.0 -6.2 fused chorismate mutase T/prephenate dehydrogenase (NCBI) compare
b0242 proB -9.0 -6.2 gamma-glutamyl kinase (NCBI) compare
b0002 thrA -9.0 -6.2 bifunctional aspartokinase I/homeserine dehydrogenase I (NCBI) compare
b0074 leuA -8.9 -6.2 2-isopropylmalate synthase (NCBI) compare
b2019 hisG -8.9 -6.1 ATP phosphoribosyltransferase (NCBI) compare
b3008 metC -8.9 -6.1 cystathionine beta-lyase (NCBI) compare
b0032 carA -8.9 -6.1 carbamoyl-phosphate synthase small subunit (NCBI) compare
b3957 argE -8.9 -13.6 acetylornithine deacetylase (NCBI) compare
b3770 ilvE -8.8 -6.1 branched-chain amino acid aminotransferase (NCBI) compare
b2752 cysD -8.8 -6.1 sulfate adenylyltransferase subunit 2 (NCBI) compare
b1261 trpB -8.8 -4.6 tryptophan synthase subunit beta (NCBI) compare
b0071 leuD -8.8 -6.1 isopropylmalate isomerase small subunit (NCBI) compare
b2021 hisC -8.8 -6.1 histidinol-phosphate aminotransferase (NCBI) compare
b3771 ilvD -8.8 -6.1 dihydroxy-acid dehydratase (NCBI) compare
b3956 ppc -8.8 -6.1 phosphoenolpyruvate carboxylase (NCBI) compare
b3939 metB -8.7 -6.0 cystathionine gamma-synthase (NCBI) compare
b3960 argH -8.7 -6.0 argininosuccinate lyase (NCBI) compare
b0678 nagB -8.7 -6.0 glucosamine-6-phosphate deaminase (NCBI) compare
b2023 hisH -8.7 -6.0 imidazole glycerol phosphate synthase subunit HisH (NCBI) compare
b0243 proA -8.7 -6.0 gamma-glutamyl phosphate reductase (NCBI) compare
b3172 argG -8.6 -6.0 argininosuccinate synthase (NCBI) compare
b0523 purE -8.6 -5.9 phosphoribosylaminoimidazole carboxylase catalytic subunit (NCBI) compare
b3959 argB -8.6 -10.3 acetylglutamate kinase (RefSeq) compare
b3281 aroE -8.5 -5.9 dehydroshikimate reductase, NAD(P)-binding (NCBI) compare
b2838 lysA -8.5 -5.9 diaminopimelate decarboxylase, PLP-binding (NCBI) compare
b4214 cysQ -8.5 -5.9 PAPS (adenosine 3'-phosphate 5'-phosphosulfate) 3'(2'),5'-bisphosphate nucleotidase (NCBI) compare
b1281 pyrF -8.5 -5.8 orotidine 5'-phosphate decarboxylase (NCBI) compare
b1262 trpC -8.5 -5.8 N-(5-phosphoribosyl)anthranilate isomerase and indole-3-glycerolphosphate synthetase (VIMSS) compare
b0004 thrC -8.4 -5.8 threonine synthase (NCBI) compare
b4006 purH -8.4 -5.8 bifunctionalphosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase (NCBI) compare
b3773 ilvY -8.4 -10.0 DNA-binding transcriptional dual regulator (NCBI) compare
b2751 cysN -8.4 -8.2 sulfate adenylyltransferase subunit 1 (NCBI) compare
b1062 pyrC -8.4 -5.8 dihydroorotase (NCBI) compare
b0912 ihfB -8.4 -5.8 integration host factor subunit beta (NCBI) compare
b1232 purU -8.3 -5.8 formyltetrahydrofolate deformylase (NCBI) compare
b2764 cysJ -8.3 -5.7 sulfite reductase, alpha subunit, flavoprotein (NCBI) compare
b2424 cysU -8.3 -5.0 sulfate/thiosulfate transporter subunit (NCBI) compare
b4005 purD -8.2 -5.7 phosphoribosylamine--glycine ligase (NCBI) compare
b3772 ilvA -8.2 -13.8 threonine dehydratase (NCBI) compare
b4388 serB -8.2 -5.7 3-phosphoserine phosphatase (NCBI) compare
b3389 aroB -8.2 -5.7 3-dehydroquinate synthase (NCBI) compare
b2312 purF -8.2 -5.6 amidophosphoribosyltransferase (NCBI) compare
b2022 hisB -8.1 -5.6 imidazoleglycerolphosphate dehydratase and histidinol-phosphate phosphatase (VIMSS) compare
b1263 trpD -8.1 -5.4 bifunctional indole-3-glycerol-phosphate synthase/anthranilate phosphoribosyltransferase (NCBI) compare
b1192 ldcA -8.1 -5.6 L,D-carboxypeptidase A (NCBI) compare
b3368 cysG -8.0 -5.6 fused siroheme synthase 1,3-dimethyluroporphyriongen III dehydrogenase and siroheme ferrochelatase/uroporphyrinogen methyltransferase (NCBI) compare
b0522 purK -8.0 -5.6 phosphoribosylaminoimidazole carboxylase (NCBI) compare
b2763 cysI -8.0 -5.5 sulfite reductase, beta subunit, NAD(P)-binding, heme-binding (NCBI) compare
b0720 gltA -7.9 -5.5 citrate synthase (NCBI) compare
b2557 purL -7.9 -5.5 phosphoribosylformylglycinamidine synthase (NCBI) compare
b2025 hisF -7.8 -5.4 imidazole glycerol phosphate synthase subunit HisF (NCBI) compare
b2762 cysH -7.7 -5.4 phosphoadenosine phosphosulfate reductase (NCBI) compare
b2188 yejM -7.7 -10.6 predicted hydrolase, inner membrane (NCBI) compare
b3642 pyrE -7.6 -5.3 orotate phosphoribosyltransferase (NCBI) compare
b2913 serA -7.6 -7.4 D-3-phosphoglycerate dehydrogenase (NCBI) compare
b2499 purM -7.6 -5.2 phosphoribosylaminoimidazole synthetase (NCBI) compare
b0957 ompA -7.5 -5.2 outer membrane protein A (3a;II*;G;d) (NCBI) compare
b1285 gmr -7.5 -5.2 modulator of Rnase II stability (NCBI) compare
b0945 pyrD -7.4 -5.1 dihydroorotate dehydrogenase (NCBI) compare
b1693 aroD -7.3 -5.1 3-dehydroquinate dehydratase (NCBI) compare
b0908 aroA -7.2 -5.0 3-phosphoshikimate 1-carboxyvinyltransferase (NCBI) compare
b2329 aroC -7.1 -4.9 chorismate synthase (NCBI) compare
b0386 proC -7.1 -4.9 pyrroline-5-carboxylate reductase (NCBI) compare
b1264 trpE -7.1 -7.3 anthranilate synthase component I (NCBI) compare
b1865 nudB -7.1 -3.7 dATP pyrophosphohydrolase (NCBI) compare
b3781 trxA -6.9 -4.8 thioredoxin 1 (VIMSS) compare
b2479 gcvR -6.6 -4.6 transcriptional regulation of gcv operon (VIMSS) compare
b0003 thrB -6.6 -7.6 homoserine kinase (NCBI) compare
b2603 yfiR -6.5 -14.6 hypothetical protein (NCBI) compare
b2501 ppk -6.3 -12.9 polyphosphate kinase (NCBI) compare
b2024 hisA -6.3 -2.7 N-(5'-phospho-L-ribosyl-formimino)-5-amino-1-(5'- phosphoribosyl)-4-imidazolecarboxamide isomerase (VIMSS) compare
b0222 lpcA -6.3 -4.3 phosphoheptose isomerase (NCBI) compare
b3429 glgA -6.3 -18.5 glycogen synthase (NCBI) compare
b3390 aroK -6.3 -4.3 shikimate kinase I (NCBI) compare
b2784 relA -6.2 -15.1 (p)ppGpp synthetase I/GTP pyrophosphokinase (NCBI) compare
b0077 ilvI -6.0 -14.5 acetolactate synthase III large subunit (NCBI) compare
b3052 rfaE -5.9 -5.7 fused heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase (NCBI) compare
b0113 pdhR -5.9 -7.4 transcriptional regulator of pyruvate dehydrogenase complex (NCBI) compare
b2423 cysW -5.9 -8.8 sulfate/thiosulfate transporter subunit (NCBI) compare
b0438 clpX -5.8 -9.6 ATP-dependent protease ATP-binding subunit (NCBI) compare
b0888 trxB -5.7 -4.0 thioredoxin reductase, FAD/NAD(P)-binding (NCBI) compare
b3237 argR -5.7 -7.8 arginine repressor (NCBI) compare
b3860 dsbA -5.7 -13.3 periplasmic protein disulfide isomerase I (NCBI) compare
b0740 tolB -5.7 -3.9 translocation protein TolB precursor (NCBI) compare
b3204 ptsN -5.7 -6.7 sugar-specific enzyme IIA component of PTS (NCBI) compare
b0741 pal -5.6 -5.5 peptidoglycan-associated outer membrane lipoprotein (NCBI) compare
b0737 tolQ -5.6 -3.9 membrane spanning protein in TolA-TolQ-TolR complex (NCBI) compare
b0817 mntR -5.4 -5.4 DNA-binding transcriptional regulator of mntH (NCBI) compare
b0726 sucA -5.3 -3.7 alpha-ketoglutarate decarboxylase (NCBI) compare
b3621 rfaC -5.3 -3.7 ADP-heptose:LPS heptosyl transferase I (NCBI) compare
b0739 tolA -5.3 -3.7 cell envelope integrity inner membrane protein TolA (NCBI) compare
b3619 rfaD -5.2 -3.6 ADP-L-glycero-D-mannoheptose-6-epimerase, NAD(P)-binding (NCBI) compare
b3839 tatC -5.2 -10.5 TatABCE protein translocation system subunit (NCBI) compare
b0677 nagA -5.0 -9.6 N-acetylglucosamine-6-phosphate deacetylase (NCBI) compare
b0738 tolR -4.9 -3.4 membrane spanning protein in TolA-TolQ-TolR complex (NCBI) compare
b3792 wzxE -4.8 -5.7 O-antigen translocase (NCBI) compare
b2422 cysA -4.7 -11.7 sulfate/thiosulfate transporter subunit (NCBI) compare
b1830 prc -4.5 -10.6 carboxy-terminal protease for penicillin-binding protein 3 (NCBI) compare
b0078 ilvH -4.4 -11.8 acetolactate synthase small subunit (NCBI) compare
b3870 glnA -4.4 -3.0 glutamine synthetase (NCBI) compare
b3620 rfaF -4.4 -9.8 ADP-heptose:LPS heptosyltransferase II (NCBI) compare
b0437 clpP -4.4 -10.2 ATP-dependent Clp protease proteolytic subunit (NCBI) compare
b0145 dksA -4.4 -3.0 DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein (NCBI) compare
b1821 b1821 -4.3 -4.3 orf, hypothetical protein (VIMSS) compare
b2912 ygfA -4.2 -5.8 putative ligase (VIMSS) compare
b2313 cvpA -4.2 -3.6 membrane protein required for colicin V production (NCBI) compare
b1677 lpp -4.2 -3.5 murein lipoprotein (NCBI) compare
b0585 fes -4.1 -7.8 enterobactin/ferric enterobactin esterase (NCBI) compare
b0142 folK -4.1 -1.2 2-amino-4-hydroxy-6-hydroxymethyldihyropteridine pyrophosphokinase (NCBI) compare
b3726 pstA -3.9 -9.1 phosphate transporter subunit (NCBI) compare
b2340 sixA -3.7 -6.9 phosphohistidine phosphatase (NCBI) compare
b1292 sapC -3.6 -4.4 predicted antimicrobial peptide transporter subunit (NCBI) compare
b3613 yibP -3.6 -6.5 putative membrane protein (VIMSS) compare
b0592 fepB -3.6 -12.2 iron-enterobactin transporter subunit (NCBI) compare
b0200 gmhB -3.5 -2.4 hypothetical protein (NCBI) compare
b3916 pfkA -3.5 -2.4 6-phosphofructokinase (NCBI) compare
b2518 ndk -3.5 -4.1 nucleoside diphosphate kinase (NCBI) compare
b4480 hdfR -3.5 -7.2 transcriptional regulator HdfR (NCBI) compare
b1185 dsbB -3.4 -4.2 reoxidizes DsbA protein following formation of disulfide bond in P-ring of flagella. (VIMSS) compare
b4042 dgkA -3.4 -2.4 diacylglycerol kinase (NCBI) compare
b0588 fepC -3.4 -7.3 iron-enterobactin transporter subunit (NCBI) compare
b0589 fepG -3.4 -10.1 iron-enterobactin transporter subunit (NCBI) compare
b2567 rnc -3.3 -2.2 ribonuclease III (NCBI) compare
b2318 truA -3.3 -5.0 tRNA pseudouridine synthase A (NCBI) compare
b0439 lon -3.2 -9.3 DNA-binding ATP-dependent protease La (NCBI) compare
b1712 ihfA -3.2 -2.2 integration host factor subunit alpha (NCBI) compare
b3728 pstS -3.1 -2.1 phosphate transporter subunit (NCBI) compare
b2599 pheA -3.1 -4.1 fused chorismate mutase P/prephenate dehydratase (NCBI) compare
b3790 rffC -3.0 -7.0 TDP-fucosamine acetyltransferase (RefSeq) compare
b3169 nusA -3.0 -5.2 transcription elongation factor NusA (NCBI) compare
b0149 mrcB -3.0 -15.3 penicillin-binding protein 1b (NCBI) compare
b2290 yfbQ -3.0 -12.8 aspartate aminotransferase (NCBI) compare
b0049 apaH -2.9 -4.8 diadenosinetetraphosphatase (NCBI) compare
b0890 ftsK -2.9 -7.2 DNA-binding membrane protein required for chromosome resolution and partitioning (NCBI) compare
b3764 yifE -2.9 -5.9 hypothetical protein (NCBI) compare
b0590 fepD -2.8 -9.0 iron-enterobactin transporter subunit (NCBI) compare
b2500 purN -2.8 -5.3 phosphoribosylglycinamide formyltransferase (NCBI) compare
b0767 ybhE -2.8 -4.9 6-phosphogluconolactonase (NCBI) compare
b4481 rffT -2.8 -9.2 4-alpha-L-fucosyltransferase (NCBI) compare
b0088 murD -2.8 -1.8 UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase (NCBI) compare
b1291 sapD -2.7 -2.6 predicted antimicrobial peptide transporter subunit (NCBI) compare
b3838 tatB -2.7 -7.7 sec-independent translocase (NCBI) compare
b0564 appY -2.6 -1.0 DLP12 prophage; DNA-binding transcriptional activator (NCBI) compare
b0623 cspE -2.6 -2.9 cold shock protein E (NCBI) compare
b3405 ompR -2.5 -6.4 osmolarity response regulator (NCBI) compare
b1861 ruvA -2.5 -2.5 Holliday junction DNA helicase motor protein (NCBI) compare
b1109 ndh -2.4 -5.6 respiratory NADH dehydrogenase 2/cupric reductase (NCBI) compare
b3828 metR -2.3 -5.5 DNA-binding transcriptional activator, homocysteine-binding (NCBI) compare
b2820 recB -2.3 -1.6 exonuclease V (RecBCD complex), beta subunit (NCBI) compare
b2217 rcsB -2.3 -5.2 DNA-binding response regulator in two-component regulatory system with RcsC and YojN (NCBI) compare
b3053 glnE -2.3 -8.9 fused deadenylyltransferase/adenylyltransferase for glutamine synthetase (NCBI) compare
b1859 znuB -2.3 -9.0 high-affinity zinc transporter membrane component (NCBI) compare
b3398 yrfF -2.2 -5.5 predicted inner membrane protein (NCBI) compare
b0683 fur -2.2 -1.5 ferric uptake regulator (NCBI) compare
b0388 aroL -2.2 -4.5 shikimate kinase II (NCBI) compare
b1269 rluB -2.2 -4.9 23S rRNA pseudouridylate synthase (NCBI) compare
b4234 yjgA -2.2 -7.3 hypothetical protein (NCBI) compare
b3791 rffA -2.2 -8.5 TDP-4-oxo-6-deoxy-D-glucose transaminase (NCBI) compare
b2279 nuoK -2.1 -2.6 NADH dehydrogenase subunit K (NCBI) compare
b3290 trkA -2.1 -3.5 potassium transporter peripheral membrane component (NCBI) compare
b3600 mtlD -2.1 -6.2 mannitol-1-phosphate 5-dehydrogenase (NCBI) compare
b0114 aceE -2.1 -2.0 pyruvate dehydrogenase subunit E1 (NCBI) compare
b2601 aroF -2.0 -3.8 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase, tyrosine-repressible (NCBI) compare
b0075 leuL -2.0 -3.5 leu operon leader peptide (NCBI) compare
b3035 tolC -2.0 -7.4 outer membrane channel; specific tolerance to colicin E1; segregation of daughter chromosomes (VIMSS) compare
b1857 yebL -1.9 -6.5 putative adhesin (VIMSS) compare
b0755 gpmA -1.9 -7.7 phosphoglyceromutase (NCBI) compare
b0080 fruR -1.9 -7.5 DNA-binding transcriptional dual regulator (NCBI) compare
b2689 yqaA -1.9 -2.6 conserved inner membrane protein (NCBI) compare
b2064 asmA -1.9 -6.1 predicted assembly protein (NCBI) compare
b3236 mdh -1.9 -9.4 malate dehydrogenase (NCBI) compare
b3163 nlpI -1.8 -4.8 hypothetical protein (NCBI) compare
b1863 ruvC -1.8 -2.9 Holliday junction resolvase (NCBI) compare
b4593 ymgI -1.8 -1.2 hypothetical protein (RefSeq) compare
b1426 ydcH -1.8 -2.1 orf, hypothetical protein (VIMSS) compare
b4450 arcZ -1.8 -3.8 sRNA antisense regulator of tpx and sdaA, Hfq-dependent (RefSeq) compare
b2286 nuoC -1.8 -5.0 NADH:ubiquinone oxidoreductase, chain C,D (RefSeq) compare
b1658 purR -1.8 -5.9 DNA-binding transcriptional repressor, hypoxanthine-binding (NCBI) compare
b3229 sspA -1.8 -4.0 stringent starvation protein A (NCBI) compare
b4647 mokA -1.8 -1.0 no description compare
b3849 trkH -1.8 -9.4 potassium transporter (NCBI) compare
b1058 yceO -1.8 -0.7 hypothetical protein (NCBI) compare
b1286 rnb -1.8 -3.8 exoribonuclease II (NCBI) compare


Specific Phenotypes

For 18 genes in this experiment

For carbon source Ying_sugar7 in Escherichia coli BW25113

For carbon source Ying_sugar7 across organisms