| | gene | name | fitness | t score | description | |
|---|
| b2904 | gcvH | +5.6 | 35.8 | glycine cleavage system protein H (NCBI) | compare |
| b2903 | gcvP | +5.6 | 47.8 | glycine dehydrogenase (NCBI) | compare |
| b2905 | gcvT | +4.2 | 14.1 | glycine cleavage system aminomethyltransferase T (NCBI) | compare |
| b3181 | greA | +3.5 | 23.6 | transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) | compare |
| b3643 | rph | +3.2 | 7.4 | ribonuclease PH (NCBI) | conserved |
| b2808 | gcvA | +2.7 | 14.8 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b3206 | npr | +2.6 | 14.7 | phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) (NCBI) | compare |
| b2830 | nudH | +2.5 | 5.4 | dinucleoside polyphosphate hydrolase (NCBI) | compare |
| b2829 | ptsP | +2.3 | 16.0 | fused PTS enzyme: PEP-protein phosphotransferase (enzyme I)/GAF domain containing protein (NCBI) | compare |
| b0059 | hepA | +2.2 | 18.8 | ATP-dependent helicase HepA (NCBI) | compare |
| b4203 | rplI | +2.2 | 10.4 | 50S ribosomal protein L9 (NCBI) | compare |
| b2947 | gshB | +2.2 | 14.0 | glutathione synthetase (NCBI) | compare |
| b2688 | gshA | +2.1 | 13.9 | glutamate--cysteine ligase (NCBI) | compare |
| b1824 | yobF | +2.0 | 4.4 | hypothetical protein (NCBI) | compare |
| b4141 | yjeH | +1.8 | 15.2 | predicted transporter (NCBI) | compare |
| b3979 | thrT | +1.8 | 1.6 | tRNA-Thr (NCBI) | compare |
| b3778 | rep | +1.8 | 14.2 | DNA helicase and single-stranded DNA-dependent ATPase (NCBI) | compare |
| b1038 | csgF | +1.6 | 7.0 | predicted transport protein (NCBI) | compare |
| b0882 | clpA | +1.6 | 12.6 | ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity (NCBI) | compare |
| b2951 | yggS | +1.5 | 8.7 | predicted enzyme (NCBI) | compare |
| b3755 | yieP | +1.5 | 9.1 | predicted transcriptional regulator (NCBI) | compare |
| b4048 | yjbM | +1.4 | 3.4 | hypothetical protein (NCBI) | compare |
| b4171 | miaA | +1.4 | 5.1 | tRNA delta(2)-isopentenylpyrophosphate transferase (NCBI) | compare |
| b0852 | rimK | +1.3 | 7.8 | ribosomal protein S6 modification protein (NCBI) | compare |
| b1190 | dadX | +1.3 | 6.7 | alanine racemase (NCBI) | compare |
| b2297 | pta | +1.2 | 1.9 | phosphate acetyltransferase (NCBI) | compare |
| b1628 | rsxB | +1.2 | 4.4 | electron transport complex protein RnfB (NCBI) | compare |
| b1085 | b1085 | +1.2 | 4.3 | orf, hypothetical protein (VIMSS) | compare |
| b0949 | uup | +1.2 | 8.4 | fused predicted transporter subunits of ABC superfamily: ATP-binding components (NCBI) | compare |
| b1642 | slyA | +1.2 | 3.1 | transcriptional regulator for cryptic hemolysin (VIMSS) | compare |
| b1493 | gadB | +1.2 | 1.4 | glutamate decarboxylase B, PLP-dependent (NCBI) | compare |
| b0053 | surA | +1.1 | 7.2 | peptidyl-prolyl cis-trans isomerase (PPIase) (NCBI) | compare |
| b1222 | narX | +1.1 | 5.0 | sensory histidine kinase in two-component regulatory system with NarL (NCBI) | compare |
| b3706 | trmE | +1.1 | 2.9 | tRNA modification GTPase (NCBI) | compare |
| b1341 | b1341 | +1.1 | 6.2 | orf, hypothetical protein (VIMSS) | compare |
| b1630 | rsxD | +1.1 | 5.2 | electron transport complex protein RnfD (NCBI) | compare |
| b2642 | yfjW | +1.1 | 1.6 | CP4-57 prophage; predicted inner membrane protein (NCBI) | compare |
| b3027 | ygiZ | +1.1 | 0.9 | conserved inner membrane protein (NCBI) | compare |
| b1095 | fabF | +1.1 | 7.7 | 3-oxoacyl-(acyl carrier protein) synthase (NCBI) | compare |
| b3863 | polA | +1.1 | 1.4 | DNA polymerase I (NCBI) | compare |
| b1358 | ydaT | +1.1 | 2.2 | Rac prophage; predicted protein (NCBI) | compare |
| b2741 | rpoS | +1.1 | 5.5 | RNA polymerase sigma factor (NCBI) | compare |
| b2617 | smpA | +1.1 | 4.7 | small membrane protein A (VIMSS) | compare |
| b0381 | ddlA | +1.0 | 5.9 | D-alanylalanine synthetase (NCBI) | compare |
| b0051 | ksgA | +1.0 | 4.8 | dimethyladenosine transferase (NCBI) | compare |
| b1627 | rsxA | +1.0 | 4.4 | Na(+)-translocating NADH-quinone reductase subunit E (NCBI) | compare |
| b3806 | cyaA | +1.0 | 6.0 | adenylate cyclase (NCBI) | compare |
| b1233 | ychJ | +1.0 | 0.9 | hypothetical protein (NCBI) | compare |
| b2962 | yggX | +1.0 | 5.0 | hypothetical protein (NCBI) | compare |
| b2948 | yqgE | +1.0 | 4.2 | orf, hypothetical protein (VIMSS) | compare |
| b1037 | csgG | +1.0 | 7.2 | outer membrane lipoprotein (NCBI) | compare |
| b0661 | miaB | +1.0 | 6.3 | isopentenyl-adenosine A37 tRNA methylthiolase (NCBI) | compare |
| b0178 | hlpA | +1.0 | 2.7 | periplasmic chaperone (NCBI) | compare |
| b1823 | cspC | +1.0 | 1.9 | stress protein, member of the CspA-family (NCBI) | compare |
| b2189 | proL | +1.0 | 2.5 | tRNA-Pro (NCBI) | compare |
| b1422 | ydcI | +0.9 | 4.6 | putative transcriptional regulator LYSR-type (VIMSS) | compare |
| b1607 | ydgC | +0.9 | 1.9 | conserved inner membrane protein associated with alginate biosynthesis (NCBI) | compare |
| b2684 | mprA | +0.9 | 5.0 | DNA-binding transcriptional repressor of microcin B17 synthesis and multidrug efflux (NCBI) | compare |
| b1259 | yciG | +0.9 | 2.0 | orf, hypothetical protein (VIMSS) | compare |
| b1041 | csgB | +0.9 | 5.0 | curlin nucleator protein, minor subunit in curli complex (NCBI) | compare |
| b1632 | rsxE | +0.9 | 6.4 | NADH-ubiquinone oxidoreductase (NCBI) | compare |
| b4135 | yjdC | +0.9 | 4.7 | orf, hypothetical protein (VIMSS) | compare |
| b1438 | ydcQ | +0.9 | 2.6 | predicted DNA-binding transcriptional regulator (RefSeq) | compare |
| b2127 | mlrA | +0.9 | 4.6 | DNA-binding transcriptional regulator (NCBI) | compare |
| b0605 | ahpC | +0.9 | 3.5 | alkyl hydroperoxide reductase, C22 subunit (NCBI) | compare |
| b4406 | yaeP | +0.9 | 2.2 | hypothetical protein (NCBI) | compare |
| b2096 | gatY | +0.9 | 5.1 | tagatose-bisphosphate aldolase 1 (VIMSS) | compare |
| b1831 | proQ | +0.8 | 2.3 | putative solute/DNA competence effector (NCBI) | compare |
| b1042 | csgA | +0.8 | 6.2 | cryptic curlin major subunit (NCBI) | compare |
| b0998 | torD | +0.8 | 1.6 | chaperone protein TorD (NCBI) | compare |
| b0556 | rzpD | +0.8 | 1.4 | DLP12 prophage; predicted murein endopeptidase (NCBI) | compare |
| b1013 | ycdC | +0.8 | 3.3 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b0627 | tatE | +0.8 | 2.0 | twin arginine translocase protein E (NCBI) | compare |
| b2421 | cysM | +0.8 | 4.0 | cysteine synthase B (O-acetylserine sulfhydrolase B) (NCBI) | compare |
| b0549 | ybcO | +0.8 | 2.4 | DLP12 prophage; predicted protein (NCBI) | compare |
| b1606 | folM | +0.8 | 5.4 | short chain dehydrogenase (NCBI) | compare |
| b0965 | b0965 | +0.8 | 2.0 | orf, hypothetical protein (VIMSS) | compare |
| b2494 | yfgC | +0.8 | 4.2 | predicted peptidase (NCBI) | compare |
| b2433 | b2433 | +0.8 | 2.8 | orf, hypothetical protein (VIMSS) | compare |
| b1731 | cedA | +0.8 | 3.5 | cell division modulator (RefSeq) | compare |
| b3929 | rraA | +0.8 | 5.3 | ribonuclease activity regulator protein RraA (NCBI) | compare |
| b0685 | ybfE | +0.8 | 2.6 | orf, hypothetical protein (VIMSS) | compare |
| b1582 | ynfA | +0.8 | 3.3 | hypothetical protein (NCBI) | compare |
| b1557 | cspB | +0.8 | 1.3 | Qin prophage; cold shock protein (NCBI) | compare |
| b2937 | speB | +0.8 | 5.0 | agmatinase (NCBI) | compare |
| b1685 | ydiH | +0.7 | 1.3 | predicted protein (RefSeq) | compare |
| b1595 | ynfL | +0.7 | 1.8 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b2183 | rsuA | +0.7 | 3.2 | 16S rRNA pseudouridylate 516 synthase (NCBI) | compare |
| b1150 | ymfR | +0.7 | 1.0 | e14 prophage; predicted protein (NCBI) | compare |
| b4241 | treR | +0.7 | 5.7 | trehalose repressor (NCBI) | compare |
| b1567 | intK | +0.7 | 2.4 | Qin prophage; predicted protein (RefSeq) | compare |
| b3869 | glnL | +0.7 | 4.1 | sensory histidine kinase in two-component regulatory system with GlnG (NCBI) | compare |
| b4651 | yibW | +0.7 | 0.6 | no description | compare |
| b0238 | gpt | +0.7 | 2.9 | xanthine phosphoribosyltransferase (NCBI) | compare |
| b2303 | folX | +0.7 | 5.1 | D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase and dihydroneopterin aldolase (NCBI) | compare |
| b4443 | gcvB | +0.7 | 0.4 | GcvB sRNA gene divergent from gcvA (RefSeq) | compare |
| b2042 | galF | +0.7 | 4.8 | predicted subunit with GalU (NCBI) | compare |
| b1849 | purT | +0.7 | 3.5 | phosphoribosylglycinamide formyltransferase 2 (NCBI) | compare |
| b0310 | ykgH | +0.7 | 1.9 | predicted inner membrane protein (NCBI) | compare |
| b2786 | barA | +0.7 | 6.4 | hybrid sensory histidine kinase, in two-component regulatory system with UvrY (NCBI) | compare |
| b2809 | b2809 | +0.7 | 2.0 | orf, hypothetical protein (VIMSS) | compare |
| b0545 | ybcL | +0.7 | 4.4 | DLP12 prophage; predicted kinase inhibitor (NCBI) | compare |
| b0303 | ykgI | +0.7 | 1.0 | orf, hypothetical protein (VIMSS) | compare |
| b1725 | yniA | +0.7 | 2.8 | predicted phosphotransferase/kinase (NCBI) | compare |
| b4436 | ryeC | +0.7 | 1.8 | Novel sRNA, function unknown; paralogous to the other QUAD sRNA genes unknown (RefSeq) | compare |
| b3644 | yicC | +0.7 | 2.0 | hypothetical protein (NCBI) | compare |
| b4692 | oweE | +0.7 | 3.1 | no description | compare |
| b1871 | yecP | +0.7 | 3.0 | predicted S-adenosyl-L-methionine-dependent methyltransferase (NCBI) | compare |
| b1446 | ydcY | +0.7 | 2.3 | hypothetical protein (NCBI) | compare |
| b1465 | narV | +0.7 | 1.7 | nitrate reductase 2 (NRZ), gamma subunit (NCBI) | compare |
| b4543 | ypaA | +0.7 | 2.6 | predicted protein (NCBI) | compare |
| b2749 | ygbE | +0.7 | 3.2 | conserved inner membrane protein (NCBI) | compare |
| b2058 | wcaB | +0.6 | 1.1 | predicted acyl transferase (NCBI) | compare |
| b3351 | kefG | +0.6 | 3.2 | glutathione-regulated potassium-efflux system ancillary protein (NCBI) | compare |
| b0686 | ybfF | +0.6 | 4.5 | hypothetical protein (NCBI) | compare |
| b3563 | yiaB | +0.6 | 3.0 | orf, hypothetical protein (VIMSS) | compare |
| b4110 | yjcZ | +0.6 | 4.0 | orf, hypothetical protein (VIMSS) | compare |
| b2111 | yehD | +0.6 | 2.3 | predicted fimbrial-like adhesin protein (NCBI) | compare |
| b0854 | potF | +0.6 | 3.2 | putrescine transporter subunit: periplasmic-binding component of ABC superfamily (NCBI) | compare |
| b1066 | rimJ | +0.6 | 3.2 | ribosomal-protein-S5-alanine N-acetyltransferase (NCBI) | compare |
| b1070 | flgN | +0.6 | 1.2 | export chaperone for FlgK and FlgL (NCBI) | compare |
| b3194 | yrbE | +0.6 | 4.6 | predicted toluene transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b1914 | uvrY | +0.6 | 3.0 | response regulator (NCBI) | compare |
| b4402 | yjjY | +0.6 | 0.9 | hypothetical protein (NCBI) | compare |
| b2326 | yfcM | +0.6 | 3.0 | hypothetical protein (NCBI) | compare |
| b2342 | yfcY | +0.6 | 3.8 | acetyl-CoA acetyltransferase (NCBI) | compare |
| b0580 | ybdJ | +0.6 | 1.6 | predicted inner membrane protein (NCBI) | compare |
| b4030 | yjbA | +0.6 | 2.3 | phosphate-starvation-inducible protein PsiE (NCBI) | compare |
| b1591 | b1591 | +0.6 | 1.7 | putative oxidoreductase component (VIMSS) | compare |
| b0610 | rnk | +0.6 | 1.6 | nucleoside diphosphate kinase regulator (NCBI) | compare |
| b4163 | glyV | +0.6 | 1.2 | tRNA-Gly (NCBI) | compare |
| b3119 | tdcR | +0.6 | 1.5 | threonine dehydratase operon activator protein (VIMSS) | compare |
| b4256 | yjgM | +0.6 | 4.3 | predicted acetyltransferase (NCBI) | compare |
| b4391 | yjjK | +0.6 | 3.9 | fused predicted transporter subunits of ABC superfamily: ATP-binding components (NCBI) | compare |
| b3146 | yraL | +0.6 | 2.9 | predicted methyltransferase (NCBI) | compare |
| b0710 | ybgI | +0.6 | 3.2 | conserved metal-binding protein (NCBI) | compare |
| b0881 | clpS | +0.6 | 1.6 | ATP-dependent Clp protease adaptor protein ClpS (NCBI) | compare |
| b4017 | arpA | +0.6 | 2.8 | regulator of acetyl CoA synthetase (NCBI) | compare |
| b2141 | yohJ | +0.6 | 2.8 | hypothetical protein (NCBI) | compare |
| b1758 | b1758 | +0.6 | 0.9 | putative cytochrome oxidase (VIMSS) | compare |
| b4373 | rimI | +0.6 | 1.3 | ribosomal-protein-alanine N-acetyltransferase (NCBI) | compare |
| b1629 | rsxC | +0.6 | 3.1 | electron transport complex protein RnfC (NCBI) | compare |
| b4053 | alr | +0.5 | 3.9 | alanine racemase (NCBI) | compare |
| b0339 | cynT | +0.5 | 3.1 | carbonic anhydrase (NCBI) | compare |
| b2218 | rcsC | +0.5 | 3.7 | hybrid sensory kinase in two-component regulatory system with RcsB and YojN (RefSeq) | compare |
| b2572 | rseA | +0.5 | 1.3 | anti-sigma factor (NCBI) | compare |
| b2128 | yehW | +0.5 | 2.9 | predicted transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b0550 | rusA | +0.5 | 1.9 | DLP12 prophage; endonuclease RUS (NCBI) | compare |
| b0856 | potH | +0.5 | 2.9 | putrescine transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b2447 | yffP | +0.5 | 2.9 | CPZ-55 prophage; predicted protein (NCBI) | compare |
| b2114 | metG | +0.5 | 0.9 | methionyl-tRNA synthetase (NCBI) | compare |
| b0471 | ybaB | +0.5 | 1.6 | hypothetical protein (NCBI) | compare |
| b2587 | kgtP | +0.5 | 3.5 | alpha-ketoglutarate transporter (NCBI) | compare |
| b0968 | yccX | +0.5 | 1.8 | predicted acylphosphatase (NCBI) | compare |
| b2512 | yfgL | +0.5 | 2.5 | protein assembly complex, lipoprotein component (NCBI) | compare |
| b3484 | yhhI | +0.5 | 1.6 | predicted transposase (NCBI) | compare |
| b0857 | potI | +0.5 | 2.2 | putrescine transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b4461 | yfjD | +0.5 | 3.4 | predicted inner membrane protein (RefSeq) | compare |
| b4458 | oxyS | +0.5 | 1.0 | global regulatory RNA (NCBI) | compare |
| b0199 | metN | +0.5 | 4.1 | DL-methionine transporter subunit (NCBI) | compare |
| b1335 | ogt | +0.5 | 1.6 | O-6-alkylguanine-DNA:cysteine-protein methyltransferase (NCBI) | compare |
| b2341 | yfcX | +0.5 | 3.2 | fused enoyl-CoA hydratase and epimerase and isomerase/3-hydroxyacyl-CoA dehydrogenase (NCBI) | compare |
| b3350 | kefB | +0.5 | 4.5 | glutathione-regulated potassium-efflux system protein (NCBI) | compare |
| b0508 | hyi | +0.5 | 2.1 | hydroxypyruvate isomerase (NCBI) | compare |
| b1923 | fliC | +0.5 | 2.9 | flagellin (NCBI) | compare |
| b4644 | ypjI | +0.5 | 2.5 | no description | compare |
| b3934 | cytR | +0.5 | 3.8 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b1754 | b1754 | +0.5 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b1284 | yciT | +0.5 | 2.4 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1090 | plsX | +0.5 | 2.0 | glycerolphosphate auxotrophy in plsB background (VIMSS) | compare |
| b4260 | pepA | +0.5 | 3.6 | leucyl aminopeptidase (NCBI) | compare |
| b0695 | kdpD | +0.5 | 2.4 | fused sensory histidine kinase in two-component regulatory system with KdpE: signal sensing protein (NCBI) | compare |
| b3261 | fis | +0.5 | 1.2 | DNA-binding protein Fis (NCBI) | compare |
| b4376 | osmY | +0.5 | 2.5 | periplasmic protein (NCBI) | compare |
| b0197 | metQ | +0.5 | 3.2 | DL-methionine transporter subunit (NCBI) | compare |
| b1806 | yeaY | +0.5 | 2.2 | predicted lipoprotein (NCBI) | compare |
| b1583 | ynfB | +0.5 | 2.2 | hypothetical protein (NCBI) | compare |
| b1819 | manZ | +0.5 | 2.0 | mannose-specific enzyme IID component of PTS (NCBI) | compare |
| b3616 | tdh | +0.5 | 2.6 | L-threonine 3-dehydrogenase (NCBI) | compare |
| b4041 | plsB | +0.5 | 1.1 | glycerol-3-phosphate acyltransferase (VIMSS) | compare |
| b4546 | ypeB | +0.5 | 0.8 | hypothetical protein (NCBI) | compare |
| b1676 | pykF | +0.5 | 1.8 | pyruvate kinase (NCBI) | compare |
| b3632 | rfaQ | +0.5 | 4.2 | lipopolysaccharide core biosynthesis protein (NCBI) | compare |
| b0830 | yliB | +0.5 | 3.0 | predicted peptide transporter subunit: periplasmic-binding component of ABC superfamily (NCBI) | compare |
| b1703 | ydiA | +0.5 | 3.1 | hypothetical protein (NCBI) | compare |
| b1247 | oppF | +0.5 | 1.7 | oligopeptide transporter subunit (NCBI) | compare |
| b2186 | yejK | +0.5 | 3.2 | nucleoid-associated protein NdpA (NCBI) | compare |
| b3769 | ilvM | +0.5 | 1.6 | acetolactate synthase II, small subunit (NCBI) | compare |
| b4232 | fbp | +0.5 | 3.3 | fructose-1,6-bisphosphatase (NCBI) | compare |
| b1427 | rimL | +0.5 | 1.8 | ribosomal-protein-L7/L12-serine acetyltransferase (NCBI) | compare |
| b1141 | ymfG | +0.5 | 1.2 | e14 prophage; predicted excisionase (NCBI) | compare |
| b3382 | yhfY | +0.5 | 2.1 | orf, hypothetical protein (VIMSS) | compare |
| b2538 | hcaE | +0.5 | 1.7 | 3-phenylpropionate dioxygenase, large (alpha) subunit (NCBI) | compare |
| b2445 | yffN | +0.5 | 1.8 | CPZ-55 prophage; predicted protein (RefSeq) | compare |
| b4409 | blr | +0.5 | 2.4 | beta-lactam resistance membrane protein (NCBI) | compare |
| b1115 | ycfT | +0.5 | 1.7 | predicted inner membrane protein (NCBI) | compare |
| b2513 | yfgM | +0.5 | 1.1 | hypothetical protein (NCBI) | compare |
| b1079 | flgH | +0.5 | 2.2 | flagellar L-ring protein precursor H (NCBI) | compare |
| b0619 | citA | +0.5 | 2.6 | sensory histidine kinase in two-component regulatory system with citB (NCBI) | compare |
| b1243 | oppA | +0.5 | 2.5 | oligopeptide transporter subunit (NCBI) | compare |