| | gene | name | fitness | t score | description | |
|---|
| b2741 | rpoS | +6.2 | 49.8 | RNA polymerase sigma factor (NCBI) | compare |
| b2903 | gcvP | +4.8 | 40.7 | glycine dehydrogenase (NCBI) | compare |
| b2904 | gcvH | +4.8 | 30.7 | glycine cleavage system protein H (NCBI) | compare |
| b2808 | gcvA | +3.9 | 28.1 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b2905 | gcvT | +3.9 | 19.4 | glycine cleavage system aminomethyltransferase T (NCBI) | compare |
| b2951 | yggS | +3.2 | 21.2 | predicted enzyme (NCBI) | compare |
| b1095 | fabF | +2.8 | 24.2 | 3-oxoacyl-(acyl carrier protein) synthase (NCBI) | compare |
| b1422 | ydcI | +2.3 | 13.9 | putative transcriptional regulator LYSR-type (VIMSS) | compare |
| b1831 | proQ | +2.2 | 5.0 | putative solute/DNA competence effector (NCBI) | compare |
| b1190 | dadX | +2.2 | 11.8 | alanine racemase (NCBI) | compare |
| b3027 | ygiZ | +2.0 | 2.4 | conserved inner membrane protein (NCBI) | compare |
| b0059 | hepA | +2.0 | 17.7 | ATP-dependent helicase HepA (NCBI) | compare |
| b4203 | rplI | +1.9 | 10.9 | 50S ribosomal protein L9 (NCBI) | compare |
| b1085 | b1085 | +1.9 | 3.9 | orf, hypothetical protein (VIMSS) | compare |
| b3164 | pnp | +1.8 | 6.2 | polynucleotide phosphorylase/polyadenylase (RefSeq) | compare |
| b3341 | rpsG | +1.6 | 4.1 | 30S ribosomal protein S7 (NCBI) | compare |
| b1824 | yobF | +1.6 | 6.0 | hypothetical protein (NCBI) | compare |
| b2688 | gshA | +1.6 | 11.1 | glutamate--cysteine ligase (NCBI) | compare |
| b2829 | ptsP | +1.6 | 12.0 | fused PTS enzyme: PEP-protein phosphotransferase (enzyme I)/GAF domain containing protein (NCBI) | compare |
| b2947 | gshB | +1.6 | 7.8 | glutathione synthetase (NCBI) | compare |
| b3977 | tyrU | +1.5 | 2.9 | tRNA-Tyr (NCBI) | compare |
| b4071 | nrfB | +1.5 | 1.5 | formate-dependent nitrite reductase; a penta-haeme cytochrome c (VIMSS) | compare |
| b0882 | clpA | +1.4 | 11.6 | ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity (NCBI) | compare |
| b1236 | galU | +1.4 | 9.4 | glucose-1-phosphate uridylyltransferase (NCBI) | compare |
| b1159 | mcrA | +1.3 | 2.8 | e14 prophage; 5-methylcytosine-specific restriction endonuclease B (NCBI) | compare |
| b1855 | lpxM | +1.2 | 8.1 | lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase (NCBI) | compare |
| b3979 | thrT | +1.2 | 1.0 | tRNA-Thr (NCBI) | compare |
| b1361 | ydaW | +1.2 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b1725 | yniA | +1.2 | 2.3 | predicted phosphotransferase/kinase (NCBI) | compare |
| b3929 | rraA | +1.2 | 9.2 | ribonuclease activity regulator protein RraA (NCBI) | compare |
| b1294 | sapA | +1.2 | 6.3 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b4172 | hfq | +1.2 | 1.8 | RNA-binding protein Hfq (NCBI) | compare |
| b1557 | cspB | +1.2 | 1.8 | Qin prophage; cold shock protein (NCBI) | compare |
| b0955 | ycbZ | +1.2 | 8.3 | predicted peptidase (NCBI) | compare |
| b3778 | rep | +1.1 | 8.2 | DNA helicase and single-stranded DNA-dependent ATPase (NCBI) | compare |
| b4701 | sokX | +1.1 | 1.5 | sok-related sRNA, function unknown (RefSeq) | compare |
| b3753 | rbsR | +1.1 | 9.5 | DNA-binding transcriptional repressor of ribose metabolism (NCBI) | compare |
| b2846 | yqeH | +1.0 | 1.1 | orf, hypothetical protein (VIMSS) | compare |
| b1823 | cspC | +1.0 | 2.3 | stress protein, member of the CspA-family (NCBI) | compare |
| b3454 | livF | +1.0 | 2.9 | ATP-binding component of leucine transport (VIMSS) | compare |
| b0178 | hlpA | +1.0 | 4.9 | periplasmic chaperone (NCBI) | compare |
| b0082 | mraW | +1.0 | 3.7 | S-adenosyl-methyltransferase (NCBI) | compare |
| b1191 | b1191 | +1.0 | 5.2 | orf, hypothetical protein (VIMSS) | compare |
| b3752 | rbsK | +1.0 | 7.8 | ribokinase (NCBI) | compare |
| b1040 | csgD | +1.0 | 2.6 | DNA-binding transcriptional activator in two-component regulatory system (NCBI) | compare |
| b0471 | ybaB | +1.0 | 5.1 | hypothetical protein (NCBI) | compare |
| b3842 | rfaH | +1.0 | 5.6 | transcriptional activator RfaH (NCBI) | compare |
| b3644 | yicC | +0.9 | 5.5 | hypothetical protein (NCBI) | compare |
| b4450 | arcZ | +0.9 | 4.8 | sRNA antisense regulator of tpx and sdaA, Hfq-dependent (RefSeq) | compare |
| b3672 | ivbL | +0.9 | 1.2 | ilvB operon leader peptide (NCBI) | compare |
| b4030 | yjbA | +0.9 | 5.2 | phosphate-starvation-inducible protein PsiE (NCBI) | compare |
| b2937 | speB | +0.9 | 6.2 | agmatinase (NCBI) | compare |
| b1038 | csgF | +0.9 | 2.5 | predicted transport protein (NCBI) | compare |
| b0852 | rimK | +0.9 | 5.2 | ribosomal protein S6 modification protein (NCBI) | compare |
| b0960 | b0960 | +0.9 | 7.5 | orf, hypothetical protein (VIMSS) | compare |
| b3632 | rfaQ | +0.9 | 8.1 | lipopolysaccharide core biosynthesis protein (NCBI) | compare |
| b3630 | rfaP | +0.9 | 7.3 | kinase that phosphorylates core heptose of lipopolysaccharide (NCBI) | compare |
| b2576 | srmB | +0.9 | 2.9 | ATP-dependent RNA helicase (NCBI) | compare |
| b1743 | spy | +0.9 | 1.1 | envelope stress induced periplasmic protein (NCBI) | compare |
| b4373 | rimI | +0.9 | 3.5 | ribosomal-protein-alanine N-acetyltransferase (NCBI) | compare |
| b3863 | polA | +0.9 | 1.4 | DNA polymerase I (NCBI) | compare |
| b3181 | greA | +0.8 | 4.5 | transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) | compare |
| b1299 | puuR | +0.8 | 4.9 | DNA-binding transcriptional repressor (NCBI) | compare |
| b4255 | yjgD | +0.8 | 5.3 | hypothetical protein (NCBI) | compare |
| b3102 | yqjG | +0.8 | 2.1 | predicted S-transferase (NCBI) | compare |
| b2123 | yehR | +0.8 | 0.9 | orf, hypothetical protein (VIMSS) | compare |
| b1685 | ydiH | +0.8 | 1.6 | predicted protein (RefSeq) | compare |
| b1606 | folM | +0.8 | 5.6 | short chain dehydrogenase (NCBI) | compare |
| b4174 | hflK | +0.8 | 6.0 | modulator for HflB protease specific for phage lambda cII repressor (NCBI) | compare |
| b1634 | tppB | +0.8 | 3.8 | putative tripeptide transporter permease (NCBI) | compare |
| b1189 | dadA | +0.8 | 5.4 | D-amino acid dehydrogenase (quinone) DadA (EC 1.4.5.1) (from data) | compare |
| b0866 | ybjQ | +0.8 | 1.5 | hypothetical protein (NCBI) | compare |
| b0503 | ybbB | +0.8 | 1.2 | tRNA 2-selenouridine synthase, selenophosphate-dependent (NCBI) | compare |
| b4097 | phnK | +0.8 | 1.7 | carbon-phosphorus lyase complex subunit (NCBI) | compare |
| b2259 | pmrD | +0.8 | 1.3 | polymyxin resistance protein B (VIMSS) | compare |
| b2830 | nudH | +0.8 | 1.9 | dinucleoside polyphosphate hydrolase (NCBI) | compare |
| b3146 | yraL | +0.8 | 5.2 | predicted methyltransferase (NCBI) | compare |
| b2954 | yggV | +0.8 | 1.0 | putative deoxyribonucleotide triphosphate pyrophosphatase (NCBI) | compare |
| b1160 | elbA | +0.8 | 1.2 | hypothetical protein (NCBI) | compare |
| b4391 | yjjK | +0.8 | 5.6 | fused predicted transporter subunits of ABC superfamily: ATP-binding components (NCBI) | compare |
| b1279 | yciS | +0.8 | 1.2 | conserved inner membrane protein (NCBI) | compare |
| b1187 | fadR | +0.8 | 3.5 | fatty acid metabolism regulator (NCBI) | compare |
| b3624 | rfaZ | +0.8 | 2.7 | lipopolysaccharide core biosynthesis protein (NCBI) | compare |
| b3106 | yhaK | +0.8 | 1.6 | predicted pirin-related protein (NCBI) | compare |
| b0508 | hyi | +0.7 | 3.5 | hydroxypyruvate isomerase (NCBI) | compare |
| b2303 | folX | +0.7 | 5.2 | D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase and dihydroneopterin aldolase (NCBI) | compare |
| b3455 | livG | +0.7 | 4.2 | leucine/isoleucine/valine transporter subunit (NCBI) | compare |
| b4646 | yrdE | +0.7 | 3.1 | no description | compare |
| b0696 | kdpC | +0.7 | 2.3 | potassium-transporting ATPase subunit C (NCBI) | compare |
| b1090 | plsX | +0.7 | 3.7 | glycerolphosphate auxotrophy in plsB background (VIMSS) | compare |
| b3523 | yhjE | +0.7 | 6.0 | predicted transporter (NCBI) | compare |
| b4175 | hflC | +0.7 | 5.2 | modulator for HflB protease specific for phage lambda cII repressor (NCBI) | compare |
| b0381 | ddlA | +0.7 | 4.1 | D-alanylalanine synthetase (NCBI) | compare |
| b2229 | b2229 | +0.7 | 0.8 | orf, hypothetical protein (VIMSS) | compare |
| b3911 | cpxA | +0.7 | 5.7 | two-component sensor protein (NCBI) | compare |
| b2944 | sprT | +0.7 | 1.3 | hypothetical protein (NCBI) | compare |
| b2643 | yfjX | +0.7 | 0.9 | CP4-57 prophage; predicted antirestriction protein (NCBI) | compare |
| b1581 | rspA | +0.7 | 2.8 | predicted dehydratase (NCBI) | compare |
| b1222 | narX | +0.7 | 3.0 | sensory histidine kinase in two-component regulatory system with NarL (NCBI) | compare |
| b3206 | npr | +0.7 | 3.3 | phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) (NCBI) | compare |
| b4000 | hupA | +0.7 | 3.1 | HU, DNA-binding transcriptional regulator, alpha subunit (NCBI) | compare |
| b0685 | ybfE | +0.7 | 3.2 | orf, hypothetical protein (VIMSS) | compare |
| b2521 | sseA | +0.7 | 5.3 | putative thiosulfate sulfurtransferase (VIMSS) | compare |
| b4595 | yciY | +0.7 | 2.5 | hypothetical protein (RefSeq) | compare |
| b3468 | yhhN | +0.7 | 5.6 | conserved inner membrane protein (NCBI) | compare |
| b3346 | yheO | +0.7 | 5.1 | orf, hypothetical protein (VIMSS) | compare |
| b0310 | ykgH | +0.7 | 1.8 | predicted inner membrane protein (NCBI) | compare |
| b3156 | yhbS | +0.6 | 4.7 | predicted acyltransferase with acyl-CoA N-acyltransferase domain (NCBI) | compare |
| b2175 | spr | +0.6 | 2.8 | predicted peptidase, outer membrane lipoprotein (NCBI) | compare |
| b3803 | hemX | +0.6 | 5.1 | predicted uroporphyrinogen III methylase (NCBI) | compare |
| b2665 | ygaU | +0.6 | 1.5 | hypothetical protein (NCBI) | compare |
| b0610 | rnk | +0.6 | 2.8 | nucleoside diphosphate kinase regulator (NCBI) | compare |
| b4570 | lomR | +0.6 | 2.0 | no description | compare |
| b4533 | ynfO | +0.6 | 2.0 | Qin prophage; predicted protein (NCBI) | compare |
| b4493 | gapC | +0.6 | 2.9 | no description | compare |
| b1916 | sdiA | +0.6 | 3.5 | DNA-binding transcriptional activator (NCBI) | compare |
| b4293 | fecI | +0.6 | 1.4 | KpLE2 phage-like element; RNA polymerase, sigma 19 factor (NCBI) | compare |
| b3741 | gidA | +0.6 | 3.2 | glucose-inhibited division protein A (NCBI) | compare |
| b1753 | ynjA | +0.6 | 1.5 | hypothetical protein (NCBI) | compare |
| b3670 | ilvN | +0.6 | 3.7 | acetolactate synthase small subunit (NCBI) | compare |
| b1438 | ydcQ | +0.6 | 2.1 | predicted DNA-binding transcriptional regulator (RefSeq) | compare |
| b1593 | b1593 | +0.6 | 2.1 | orf, hypothetical protein (VIMSS) | compare |
| b3780 | rhlB | +0.6 | 4.1 | ATP-dependent RNA helicase (NCBI) | compare |
| b3133 | agaV | +0.6 | 1.5 | PTS system, cytoplasmic, N-acetylgalactosamine-specific IIB component 2 (EIIB-AGA) (VIMSS) | compare |
| b0240 | crl | +0.6 | 3.8 | DNA-binding transcriptional regulator (NCBI) | compare |
| b2421 | cysM | +0.6 | 2.2 | cysteine synthase B (O-acetylserine sulfhydrolase B) (NCBI) | compare |
| b1329 | b1329 | +0.6 | 3.7 | putative transport periplasmic protein (VIMSS) | compare |
| b1132 | hflD | +0.6 | 2.6 | hypothetical protein (NCBI) | compare |
| b3740 | gidB | +0.6 | 4.1 | glucose-inhibited division protein B (NCBI) | compare |
| b1822 | rrmA | +0.6 | 1.7 | 23S rRNA m1G745 methyltransferase (NCBI) | compare |
| b2058 | wcaB | +0.6 | 1.1 | predicted acyl transferase (NCBI) | compare |
| b4371 | rsmC | +0.6 | 4.3 | 16S ribosomal RNA m2G1207 methyltransferase (NCBI) | compare |
| b1566 | flxA | +0.6 | 2.7 | Qin prophage; predicted protein (NCBI) | compare |
| b4482 | yigE | +0.6 | 1.7 | hypothetical protein (NCBI) | compare |
| b0167 | glnD | +0.6 | 1.9 | PII uridylyl-transferase (NCBI) | compare |
| b1380 | ldhA | +0.6 | 1.8 | D-lactate dehydrogenase (NCBI) | compare |
| b2474 | ypfI | +0.6 | 3.8 | predicted hydrolase (NCBI) | compare |
| b1731 | cedA | +0.6 | 2.2 | cell division modulator (RefSeq) | compare |
| b4654 | yjdQ | +0.6 | 2.4 | no description | compare |
| b1390 | paaC | +0.6 | 3.0 | predicted multicomponent oxygenase/reductase subunit for phenylacetic acid degradation (NCBI) | compare |
| b4294 | insA-7 | +0.6 | 1.5 | KpLE2 phage-like element; IS1 repressor protein InsA (NCBI) | compare |
| b4397 | creA | +0.6 | 0.9 | hypothetical protein (NCBI) | compare |
| b1334 | fnr | +0.5 | 2.1 | DNA-binding transcriptional dual regulator, global regulator of anaerobic growth (NCBI) | compare |
| b3928 | yiiU | +0.5 | 2.8 | hypothetical protein (NCBI) | compare |
| b3616 | tdh | +0.5 | 3.1 | L-threonine 3-dehydrogenase (NCBI) | compare |
| b3881 | yihT | +0.5 | 2.0 | predicted aldolase (NCBI) | compare |
| b1609 | rstB | +0.5 | 1.8 | sensory histidine kinase in two-component regulatory system with RstA (NCBI) | compare |
| b2625 | yfjI | +0.5 | 1.5 | CP4-57 prophage; predicted protein (NCBI) | compare |
| b2199 | ccmC | +0.5 | 0.8 | heme exporter subunit (NCBI) | compare |
| b1765 | ydjA | +0.5 | 0.6 | predicted oxidoreductase (NCBI) | compare |
| b4461 | yfjD | +0.5 | 3.4 | predicted inner membrane protein (RefSeq) | compare |
| b1394 | paaG | +0.5 | 2.2 | enoyl-CoA hydratase (NCBI) | compare |
| b3867 | hemN | +0.5 | 4.2 | O2-independent coproporphyrinogen III oxidase (VIMSS) | compare |
| b3197 | kdsD | +0.5 | 3.2 | D-arabinose 5-phosphate isomerase (NCBI) | compare |
| b4242 | mgtA | +0.5 | 3.1 | magnesium transporter (NCBI) | compare |
| b0556 | rzpD | +0.5 | 2.2 | DLP12 prophage; predicted murein endopeptidase (NCBI) | compare |
| b0791 | ybhQ | +0.5 | 2.1 | predicted inner membrane protein (NCBI) | compare |
| b2101 | yegW | +0.5 | 2.5 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b2876 | b2876 | +0.5 | 2.2 | orf, hypothetical protein (VIMSS) | compare |
| b4603 | rseX | +0.5 | 0.5 | sRNA regulating ompA and ompC translation, with Hfq (RefSeq) | compare |
| b3628 | rfaB | +0.5 | 3.8 | UDP-D-galactose:(glucosyl)lipopolysaccharide-1, 6-D-galactosyltransferase (RefSeq) | compare |
| b2946 | yggJ | +0.5 | 1.7 | orf, hypothetical protein (VIMSS) | compare |
| b2262 | menB | +0.5 | 1.3 | naphthoate synthase (NCBI) | compare |
| b3686 | ibpB | +0.5 | 1.4 | heat shock chaperone (NCBI) | compare |
| b0382 | yaiB | +0.5 | 3.2 | hypothetical protein (NCBI) | compare |
| b2377 | yfdY | +0.5 | 2.0 | predicted inner membrane protein (NCBI) | compare |
| b1575 | dicB | +0.5 | 1.3 | Qin prophage; cell division inhibition protein (NCBI) | compare |
| b4135 | yjdC | +0.5 | 3.2 | orf, hypothetical protein (VIMSS) | compare |
| b1037 | csgG | +0.5 | 4.1 | outer membrane lipoprotein (NCBI) | compare |
| b2433 | b2433 | +0.5 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b0605 | ahpC | +0.5 | 2.2 | alkyl hydroperoxide reductase, C22 subunit (NCBI) | compare |
| b4402 | yjjY | +0.5 | 0.8 | hypothetical protein (NCBI) | compare |
| b1332 | ynaJ | +0.5 | 0.5 | predicted inner membrane protein (NCBI) | compare |
| b3198 | kdsC | +0.5 | 2.3 | 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (NCBI) | compare |
| b3631 | rfaG | +0.5 | 4.3 | glucosyltransferase I (NCBI) | compare |
| b1854 | pykA | +0.5 | 3.1 | pyruvate kinase (NCBI) | compare |
| b1075 | flgD | +0.5 | 2.3 | flagellar basal body rod modification protein D (NCBI) | compare |
| b2910 | zapA | +0.5 | 2.3 | protein that localizes to the cytokinetic ring (NCBI) | compare |
| b2341 | yfcX | +0.5 | 2.7 | fused enoyl-CoA hydratase and epimerase and isomerase/3-hydroxyacyl-CoA dehydrogenase (NCBI) | compare |
| b0217 | yafT | +0.5 | 1.6 | predicted aminopeptidase (NCBI) | compare |
| b1591 | b1591 | +0.5 | 1.4 | putative oxidoreductase component (VIMSS) | compare |
| b3257 | yhdT | +0.5 | 2.1 | conserved inner membrane protein (NCBI) | compare |
| b1846 | yebE | +0.5 | 2.5 | hypothetical protein (NCBI) | compare |
| b4260 | pepA | +0.5 | 3.7 | leucyl aminopeptidase (NCBI) | compare |
| b1819 | manZ | +0.5 | 2.3 | mannose-specific enzyme IID component of PTS (NCBI) | compare |
| b2480 | bcp | +0.5 | 1.9 | thioredoxin-dependent thiol peroxidase (NCBI) | compare |
| b0279 | yagM | +0.5 | 0.8 | CP4-6 prophage; predicted protein (NCBI) | compare |
| b1628 | rsxB | +0.5 | 1.9 | electron transport complex protein RnfB (NCBI) | compare |
| b3460 | livJ | +0.5 | 3.5 | leucine/isoleucine/valine transporter subunit (NCBI) | compare |
| b1111 | ycfQ | +0.5 | 1.1 | orf, hypothetical protein (VIMSS) | compare |
| b3293 | yhdN | +0.5 | 0.8 | hypothetical protein (NCBI) | compare |
| b3196 | yrbG | +0.5 | 3.2 | predicted calcium/sodium:proton antiporter (NCBI) | compare |
| b1651 | gloA | +0.5 | 0.8 | glyoxalase I, Ni-dependent (NCBI) | compare |
| b3351 | kefG | +0.5 | 1.7 | glutathione-regulated potassium-efflux system ancillary protein (NCBI) | compare |
| b0779 | uvrB | +0.5 | 3.4 | excinuclease ABC subunit B (NCBI) | compare |
| b3706 | trmE | +0.5 | 1.9 | tRNA modification GTPase (NCBI) | compare |
| b1395 | paaH | +0.5 | 3.2 | 3-hydroxybutyryl-CoA dehydrogenase (NCBI) | compare |
| b4041 | plsB | +0.4 | 1.2 | glycerol-3-phosphate acyltransferase (VIMSS) | compare |
| b2644 | yfjY | +0.4 | 0.7 | CP4-57 prophage; predicted DNA repair protein (NCBI) | compare |
| b4048 | yjbM | +0.4 | 1.0 | hypothetical protein (NCBI) | compare |