| | gene | name | fitness | t score | description | |
|---|
| b2127 | mlrA | +5.8 | 36.5 | DNA-binding transcriptional regulator (NCBI) | compare |
| b3753 | rbsR | +5.6 | 36.3 | DNA-binding transcriptional repressor of ribose metabolism (NCBI) | compare |
| b1040 | csgD | +5.6 | 22.6 | DNA-binding transcriptional activator in two-component regulatory system (NCBI) | compare |
| b1341 | b1341 | +5.4 | 37.9 | orf, hypothetical protein (VIMSS) | compare |
| b4172 | hfq | +5.3 | 7.3 | RNA-binding protein Hfq (NCBI) | compare |
| b1038 | csgF | +4.9 | 28.2 | predicted transport protein (NCBI) | compare |
| b3755 | yieP | +4.6 | 39.5 | predicted transcriptional regulator (NCBI) | compare |
| b1584 | speG | +4.4 | 36.0 | spermidine N1-acetyltransferase (NCBI) | conserved |
| b1037 | csgG | +4.4 | 36.9 | outer membrane lipoprotein (NCBI) | compare |
| b2218 | rcsC | +4.3 | 28.2 | hybrid sensory kinase in two-component regulatory system with RcsB and YojN (RefSeq) | compare |
| b2741 | rpoS | +4.3 | 25.1 | RNA polymerase sigma factor (NCBI) | compare |
| b3398 | yrfF | +4.1 | 6.0 | predicted inner membrane protein (NCBI) | compare |
| b2904 | gcvH | +4.0 | 20.6 | glycine cleavage system protein H (NCBI) | compare |
| b1831 | proQ | +3.8 | 13.4 | putative solute/DNA competence effector (NCBI) | compare |
| b2903 | gcvP | +3.8 | 16.8 | glycine dehydrogenase (NCBI) | compare |
| b2830 | nudH | +3.7 | 6.3 | dinucleoside polyphosphate hydrolase (NCBI) | compare |
| b3752 | rbsK | +3.5 | 11.1 | ribokinase (NCBI) | compare |
| b1185 | dsbB | +3.4 | 15.4 | reoxidizes DsbA protein following formation of disulfide bond in P-ring of flagella. (VIMSS) | compare |
| b4155 | yjeA | +3.3 | 5.4 | putative lysyl-tRNA synthetase (VIMSS) | compare |
| b2664 | ygaE | +3.3 | 9.9 | putative transcriptional regulator (VIMSS) | compare |
| b2216 | rcsD | +3.3 | 12.8 | phosphotransfer intermediate protein in two-component regulatory system with RcsBC (NCBI) | compare |
| b3644 | yicC | +3.2 | 20.1 | hypothetical protein (NCBI) | compare |
| b4042 | dgkA | +3.0 | 7.2 | diacylglycerol kinase (NCBI) | compare |
| b2576 | srmB | +2.9 | 11.4 | ATP-dependent RNA helicase (NCBI) | compare |
| b2905 | gcvT | +2.9 | 16.4 | glycine cleavage system aminomethyltransferase T (NCBI) | compare |
| b3764 | yifE | +2.9 | 18.7 | hypothetical protein (NCBI) | compare |
| b1222 | narX | +2.8 | 4.8 | sensory histidine kinase in two-component regulatory system with NarL (NCBI) | compare |
| b1824 | yobF | +2.6 | 10.2 | hypothetical protein (NCBI) | compare |
| b0882 | clpA | +2.6 | 18.4 | ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity (NCBI) | compare |
| b3026 | qseC | +2.6 | 12.1 | sensory histidine kinase in two-component regulatory system with QseB (NCBI) | compare |
| b1042 | csgA | +2.5 | 14.2 | cryptic curlin major subunit (NCBI) | compare |
| b4480 | hdfR | +2.5 | 15.7 | transcriptional regulator HdfR (NCBI) | compare |
| b1823 | cspC | +2.5 | 5.9 | stress protein, member of the CspA-family (NCBI) | compare |
| b4450 | arcZ | +2.5 | 13.3 | sRNA antisense regulator of tpx and sdaA, Hfq-dependent (RefSeq) | compare |
| b0450 | glnK | +2.4 | 2.6 | nitrogen assimilation regulatory protein for GlnL, GlnE, and AmtB (NCBI) | compare |
| b4171 | miaA | +2.4 | 8.7 | tRNA delta(2)-isopentenylpyrophosphate transferase (NCBI) | compare |
| b4025 | pgi | +2.3 | 17.1 | glucose-6-phosphate isomerase (NCBI) | compare |
| b3181 | greA | +2.3 | 12.3 | transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) | compare |
| b3860 | dsbA | +2.3 | 13.8 | periplasmic protein disulfide isomerase I (NCBI) | compare |
| b3229 | sspA | +2.2 | 8.5 | stringent starvation protein A (NCBI) | compare |
| b3341 | rpsG | +2.1 | 2.0 | 30S ribosomal protein S7 (NCBI) | compare |
| b2314 | dedD | +2.1 | 7.1 | putative lipoprotein (VIMSS) | compare |
| b2808 | gcvA | +2.0 | 5.8 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b4704 | arrS | +2.0 | 0.7 | Antisense sRNA ArrS, function unknown (NCBI) | compare |
| b1049 | mdoH | +1.9 | 13.0 | glucosyltransferase MdoH (NCBI) | compare |
| b0889 | lrp | +1.9 | 5.9 | DNA-binding transcriptional dual regulator, leucine-binding (NCBI) | compare |
| b1039 | csgE | +1.8 | 8.2 | predicted transport protein (NCBI) | compare |
| b0385 | yaiC | +1.8 | 9.0 | predicted diguanylate cyclase (NCBI) | compare |
| b1048 | mdoG | +1.7 | 9.0 | glucan biosynthesis protein, periplasmic (NCBI) | compare |
| b3934 | cytR | +1.7 | 10.9 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b3133 | agaV | +1.7 | 3.0 | PTS system, cytoplasmic, N-acetylgalactosamine-specific IIB component 2 (EIIB-AGA) (VIMSS) | compare |
| b1041 | csgB | +1.6 | 7.0 | curlin nucleator protein, minor subunit in curli complex (NCBI) | compare |
| b0082 | mraW | +1.6 | 7.2 | S-adenosyl-methyltransferase (NCBI) | compare |
| b0051 | ksgA | +1.6 | 5.8 | dimethyladenosine transferase (NCBI) | compare |
| b2055 | wcaE | +1.6 | 1.3 | predicted glycosyl transferase (NCBI) | compare |
| b4325 | yjiC | +1.6 | 2.6 | orf, hypothetical protein (VIMSS) | compare |
| b1583 | ynfB | +1.6 | 1.6 | hypothetical protein (NCBI) | compare |
| b3423 | glpR | +1.6 | 9.7 | DNA-binding transcriptional repressor (NCBI) | compare |
| b3454 | livF | +1.6 | 6.4 | ATP-binding component of leucine transport (VIMSS) | compare |
| b2847 | yqeI | +1.5 | 3.4 | predicted transcriptional regulator (NCBI) | compare |
| b1346 | ydaQ | +1.5 | 1.4 | orf, hypothetical protein (VIMSS) | compare |
| b4701 | sokX | +1.4 | 1.3 | sok-related sRNA, function unknown (RefSeq) | compare |
| b3871 | bipA | +1.4 | 9.3 | GTP-binding protein (NCBI) | compare |
| b0382 | yaiB | +1.4 | 7.4 | hypothetical protein (NCBI) | compare |
| b1542 | ydfI | +1.4 | 2.9 | predicted mannonate dehydrogenase (NCBI) | compare |
| b4655 | ythA | +1.3 | 1.7 | expressed protein (RefSeq) | compare |
| b3102 | yqjG | +1.3 | 2.3 | predicted S-transferase (NCBI) | compare |
| b3706 | trmE | +1.3 | 3.6 | tRNA modification GTPase (NCBI) | compare |
| b0209 | yafD | +1.3 | 5.8 | hypothetical protein (NCBI) | compare |
| b1531 | marA | +1.3 | 4.5 | multiple antibiotic resistance; transcriptional activator of defense systems (VIMSS) | compare |
| b3164 | pnp | +1.3 | 2.9 | polynucleotide phosphorylase/polyadenylase (RefSeq) | compare |
| b2501 | ppk | +1.3 | 7.9 | polyphosphate kinase (NCBI) | compare |
| b4552 | yrhC | +1.3 | 1.4 | no description | compare |
| b0990 | cspG | +1.3 | 2.0 | DNA-binding transcriptional regulator (NCBI) | compare |
| b1830 | prc | +1.3 | 6.1 | carboxy-terminal protease for penicillin-binding protein 3 (NCBI) | compare |
| b0707 | ybgA | +1.3 | 2.7 | hypothetical protein (NCBI) | compare |
| b1861 | ruvA | +1.3 | 1.1 | Holliday junction DNA helicase motor protein (NCBI) | compare |
| b2642 | yfjW | +1.2 | 1.0 | CP4-57 prophage; predicted inner membrane protein (NCBI) | compare |
| b3624 | rfaZ | +1.2 | 3.7 | lipopolysaccharide core biosynthesis protein (NCBI) | compare |
| b2317 | dedA | +1.2 | 3.0 | conserved inner membrane protein (NCBI) | compare |
| b3929 | rraA | +1.2 | 7.5 | ribonuclease activity regulator protein RraA (NCBI) | compare |
| b1085 | b1085 | +1.2 | 1.6 | orf, hypothetical protein (VIMSS) | compare |
| b1765 | ydjA | +1.2 | 1.1 | predicted oxidoreductase (NCBI) | compare |
| b0357 | yaiN | +1.2 | 1.5 | putative alpha helix chain (VIMSS) | compare |
| b0610 | rnk | +1.2 | 3.8 | nucleoside diphosphate kinase regulator (NCBI) | compare |
| b0059 | hepA | +1.2 | 8.9 | ATP-dependent helicase HepA (NCBI) | compare |
| b2330 | yfcB | +1.2 | 1.4 | putative adenine-specific methylase (VIMSS) | compare |
| b1709 | btuD | +1.1 | 1.1 | vitamin B12-transporter ATPase (NCBI) | compare |
| b1523 | yneG | +1.1 | 2.4 | hypothetical protein (NCBI) | compare |
| b0880 | cspD | +1.1 | 2.9 | cold shock protein homolog (NCBI) | compare |
| b1422 | ydcI | +1.1 | 4.3 | putative transcriptional regulator LYSR-type (VIMSS) | conserved |
| b2749 | ygbE | +1.1 | 5.9 | conserved inner membrane protein (NCBI) | compare |
| b0088 | murD | +1.1 | 2.3 | UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase (NCBI) | compare |
| b4589 | ylcI | +1.1 | 3.7 | hypothetical protein (RefSeq) | compare |
| b1743 | spy | +1.1 | 1.9 | envelope stress induced periplasmic protein (NCBI) | compare |
| b0613 | citG | +1.1 | 1.8 | triphosphoribosyl-dephospho-CoA transferase (NCBI) | compare |
| b1961 | dcm | +1.1 | 2.1 | DNA cytosine methylase (NCBI) | compare |
| b0018 | mokC | +1.1 | 1.5 | regulatory protein for HokC, overlaps CDS of hokC (NCBI) | compare |
| b1332 | ynaJ | +1.1 | 0.6 | predicted inner membrane protein (NCBI) | compare |
| b0872 | hcr | +1.0 | 0.8 | HCP oxidoreductase, NADH-dependent (NCBI) | compare |
| b4071 | nrfB | +1.0 | 1.3 | formate-dependent nitrite reductase; a penta-haeme cytochrome c (VIMSS) | compare |
| b3512 | GadE | +1.0 | 4.8 | acid-responsive regulator of gadA and gadBC (Katherine Huang) | compare |
| b2262 | menB | +1.0 | 1.2 | naphthoate synthase (NCBI) | compare |
| b1236 | galU | +1.0 | 3.7 | glucose-1-phosphate uridylyltransferase (NCBI) | compare |
| b1550 | b1550 | +1.0 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b3442 | yhhZ | +1.0 | 0.4 | hypothetical protein (NCBI) | compare |
| b4543 | ypaA | +1.0 | 3.4 | predicted protein (NCBI) | compare |
| b3035 | tolC | +1.0 | 6.0 | outer membrane channel; specific tolerance to colicin E1; segregation of daughter chromosomes (VIMSS) | compare |
| b1582 | ynfA | +1.0 | 1.9 | hypothetical protein (NCBI) | compare |
| b3933 | ftsN | +1.0 | 5.1 | essential cell division protein (NCBI) | compare |
| b2318 | truA | +1.0 | 2.9 | tRNA pseudouridine synthase A (NCBI) | compare |
| b2829 | ptsP | +1.0 | 7.5 | fused PTS enzyme: PEP-protein phosphotransferase (enzyme I)/GAF domain containing protein (NCBI) | compare |
| b3043 | ygiL | +1.0 | 3.9 | predicted fimbrial-like adhesin protein (NCBI) | compare |
| b3613 | yibP | +1.0 | 3.7 | putative membrane protein (VIMSS) | compare |
| b3785 | wzzE | +1.0 | 6.9 | putative transport protein (VIMSS) | compare |
| b3620 | rfaF | +1.0 | 3.2 | ADP-heptose:LPS heptosyltransferase II (NCBI) | compare |
| b4436 | ryeC | +1.0 | 1.8 | Novel sRNA, function unknown; paralogous to the other QUAD sRNA genes unknown (RefSeq) | compare |
| b3156 | yhbS | +1.0 | 6.0 | predicted acyltransferase with acyl-CoA N-acyltransferase domain (NCBI) | compare |
| b3121 | yhaC | +1.0 | 0.4 | hypothetical protein (NCBI) | compare |
| b3863 | polA | +0.9 | 0.9 | DNA polymerase I (NCBI) | compare |
| b1013 | ycdC | +0.9 | 2.0 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b2911 | ssrS | +0.9 | 1.6 | 6S regulatory RNA (NCBI) | compare |
| b0688 | pgm | +0.9 | 3.2 | phosphoglucomutase (NCBI) | compare |
| b3649 | rpoZ | +0.9 | 1.8 | DNA-directed RNA polymerase subunit omega (NCBI) | compare |
| b0279 | yagM | +0.9 | 1.5 | CP4-6 prophage; predicted protein (NCBI) | compare |
| b2498 | upp | +0.9 | 2.3 | uracil phosphoribosyltransferase (VIMSS) | compare |
| b1842 | holE | +0.9 | 2.1 | DNA polymerase III, theta subunit (NCBI) | compare |
| b1739 | osmE | +0.9 | 1.2 | DNA-binding transcriptional activator (NCBI) | compare |
| b2742 | nlpD | +0.9 | 4.1 | predicted outer membrane lipoprotein (NCBI) | compare |
| b2007 | yeeX | +0.9 | 0.9 | conserved protein (RefSeq) | compare |
| b1573 | ydfC | +0.9 | 1.1 | Qin prophage; predicted protein (RefSeq) | compare |
| b2229 | b2229 | +0.9 | 1.5 | orf, hypothetical protein (VIMSS) | compare |
| b4660 | yhiL | +0.9 | 0.5 | no description | compare |
| b2688 | gshA | +0.9 | 4.0 | glutamate--cysteine ligase (NCBI) | compare |
| b2199 | ccmC | +0.9 | 2.0 | heme exporter subunit (NCBI) | compare |
| b1164 | ycgZ | +0.9 | 1.3 | hypothetical protein (NCBI) | compare |
| b3443 | yrhA | +0.9 | 0.9 | orf, hypothetical protein (VIMSS) | compare |
| b1286 | rnb | +0.9 | 2.5 | exoribonuclease II (NCBI) | compare |
| b4493 | gapC | +0.9 | 2.6 | no description | compare |
| b1465 | narV | +0.9 | 1.4 | nitrate reductase 2 (NRZ), gamma subunit (NCBI) | compare |
| b0503 | ybbB | +0.9 | 1.4 | tRNA 2-selenouridine synthase, selenophosphate-dependent (NCBI) | compare |
| b2859 | ygeO | +0.8 | 2.0 | hypothetical protein (RefSeq) | compare |
| b4515 | ybgT | +0.8 | 1.4 | hypothetical protein (NCBI) | compare |
| b1429 | tehA | +0.8 | 0.9 | potassium-tellurite ethidium and proflavin transporter (NCBI) | compare |
| b3672 | ivbL | +0.8 | 1.7 | ilvB operon leader peptide (NCBI) | compare |
| b4045 | yjbJ | +0.8 | 1.2 | predicted stress response protein (NCBI) | compare |
| b0197 | metQ | +0.8 | 3.4 | DL-methionine transporter subunit (NCBI) | compare |
| b1363 | trkG | +0.8 | 1.3 | Rac prophage; potassium transporter subunit (NCBI) | compare |
| b1190 | dadX | +0.8 | 2.8 | alanine racemase (NCBI) | compare |
| b0310 | ykgH | +0.8 | 1.9 | predicted inner membrane protein (NCBI) | compare |
| b0050 | apaG | +0.8 | 4.7 | hypothetical protein (NCBI) | compare |
| b4513 | kdpF | +0.8 | 1.5 | potassium ion accessory transporter subunit (NCBI) | compare |
| b4293 | fecI | +0.8 | 1.9 | KpLE2 phage-like element; RNA polymerase, sigma 19 factor (NCBI) | compare |
| b4260 | pepA | +0.8 | 5.5 | leucyl aminopeptidase (NCBI) | compare |
| b4702 | mgtL | +0.8 | 0.8 | regulatory leader peptide for mgtA (NCBI) | compare |
| b3504 | yhiS | +0.8 | 0.5 | hypothetical protein (RefSeq) | compare |
| b3199 | yrbK | +0.8 | 2.6 | hypothetical protein (NCBI) | compare |
| b4614 | sokA | +0.8 | 1.5 | no description | compare |
| b0706 | ybfD | +0.8 | 2.1 | hypothetical protein (NCBI) | compare |
| b1493 | gadB | +0.8 | 0.6 | glutamate decarboxylase B, PLP-dependent (NCBI) | compare |
| b3836 | b3836 | +0.8 | 1.9 | orf, hypothetical protein (VIMSS) | compare |
| b3293 | yhdN | +0.8 | 1.6 | hypothetical protein (NCBI) | compare |
| b2256 | yfbH | +0.8 | 3.1 | hypothetical protein (NCBI) | compare |
| b0118 | acnB | +0.8 | 1.2 | aconitate hydratase (NCBI) | compare |
| b4558 | yifL | +0.8 | 3.5 | predicted lipoprotein (NCBI) | compare |
| b0530 | sfmA | +0.8 | 2.1 | putative fimbrial-like protein (VIMSS) | compare |
| b0500 | ybbD | +0.8 | 0.3 | hypothetical protein (RefSeq) | compare |
| b1258 | yciF | +0.8 | 0.8 | hypothetical protein (NCBI) | compare |
| b0802 | ybiJ | +0.8 | 2.2 | hypothetical protein (NCBI) | compare |
| b3769 | ilvM | +0.8 | 3.0 | acetolactate synthase II, small subunit (NCBI) | compare |
| b4253 | yjgL | +0.8 | 3.4 | orf, hypothetical protein (VIMSS) | compare |
| b2467 | yffH | +0.7 | 3.0 | predicted NUDIX hydrolase (NCBI) | compare |
| b1671 | ydhX | +0.7 | 0.9 | predicted 4Fe-4S ferridoxin-type protein (RefSeq) | compare |
| b0955 | ycbZ | +0.7 | 4.5 | predicted peptidase (NCBI) | compare |
| b3741 | gidA | +0.7 | 2.6 | glucose-inhibited division protein A (NCBI) | compare |
| b4535 | yniD | +0.7 | 0.7 | predicted protein (RefSeq) | compare |
| b1892 | flhD | +0.7 | 2.5 | DNA-binding transcriptional dual regulator with FlhC (RefSeq) | compare |
| b1095 | fabF | +0.7 | 3.2 | 3-oxoacyl-(acyl carrier protein) synthase (NCBI) | compare |
| b2635 | ypjK | +0.7 | 2.4 | CP4-57 prophage; predicted inner membrane protein (NCBI) | compare |
| b1144 | ymfJ | +0.7 | 0.7 | orf, hypothetical protein (VIMSS) | compare |
| b0623 | cspE | +0.7 | 0.5 | cold shock protein E (NCBI) | compare |
| b1150 | ymfR | +0.7 | 0.7 | e14 prophage; predicted protein (NCBI) | compare |
| b2620 | smpB | +0.7 | 0.8 | SsrA-binding protein (NCBI) | compare |
| b3626 | rfaJ | +0.7 | 2.9 | UDP-D-glucose:(galactosyl)lipopolysaccharide glucosyltransferase (NCBI) | compare |
| b3858 | yihD | +0.7 | 1.7 | hypothetical protein (NCBI) | compare |
| b4345 | mcrC | +0.7 | 1.1 | 5-methylcytosine-specific restriction enzyme McrBC, subunit McrC (NCBI) | compare |
| b1670 | ydhU | +0.7 | 2.7 | predicted cytochrome (NCBI) | compare |
| b1344 | ydaO | +0.7 | 1.1 | predicted C32 tRNA thiolase (NCBI) | compare |
| b2947 | gshB | +0.7 | 2.5 | glutathione synthetase (NCBI) | compare |
| b2049 | cpsB | +0.7 | 2.5 | mannose-1-phosphate guanyltransferase (NCBI) | compare |
| b4375 | prfC | +0.7 | 2.7 | peptide chain release factor 3 (NCBI) | compare |
| b3740 | gidB | +0.7 | 3.9 | glucose-inhibited division protein B (NCBI) | compare |
| b4438 | cyaR | +0.7 | 1.8 | sRNA effector of ompX mRNA instability, cAMP-induced; hfq-dependent (RefSeq) | compare |
| b4017 | arpA | +0.7 | 3.2 | regulator of acetyl CoA synthetase (NCBI) | compare |
| b1930 | yedF | +0.7 | 3.0 | hypothetical protein (NCBI) | compare |
| b3387 | dam | +0.7 | 4.6 | DNA adenine methylase (NCBI) | compare |
| b4397 | creA | +0.7 | 1.5 | hypothetical protein (NCBI) | compare |
| b1070 | flgN | +0.7 | 0.9 | export chaperone for FlgK and FlgL (NCBI) | compare |
| b4443 | gcvB | +0.7 | 0.2 | GcvB sRNA gene divergent from gcvA (RefSeq) | compare |
| b4441 | glmY | +0.7 | 1.1 | sRNA activator of glmS mRNA (RefSeq) | compare |