| | gene | name | fitness | t score | description | |
|---|
| b3753 | rbsR | +5.8 | 40.6 | DNA-binding transcriptional repressor of ribose metabolism (NCBI) | compare |
| b2127 | mlrA | +5.7 | 44.3 | DNA-binding transcriptional regulator (NCBI) | compare |
| b1341 | b1341 | +5.4 | 42.7 | orf, hypothetical protein (VIMSS) | compare |
| b1038 | csgF | +4.8 | 21.4 | predicted transport protein (NCBI) | compare |
| b1584 | speG | +4.8 | 35.5 | spermidine N1-acetyltransferase (NCBI) | conserved |
| b4172 | hfq | +4.7 | 6.6 | RNA-binding protein Hfq (NCBI) | compare |
| b3755 | yieP | +4.7 | 33.7 | predicted transcriptional regulator (NCBI) | compare |
| b1040 | csgD | +4.7 | 11.7 | DNA-binding transcriptional activator in two-component regulatory system (NCBI) | compare |
| b2218 | rcsC | +4.6 | 32.7 | hybrid sensory kinase in two-component regulatory system with RcsB and YojN (RefSeq) | compare |
| b2903 | gcvP | +4.4 | 20.2 | glycine dehydrogenase (NCBI) | compare |
| b1037 | csgG | +4.4 | 38.4 | outer membrane lipoprotein (NCBI) | compare |
| b3398 | yrfF | +4.3 | 8.9 | predicted inner membrane protein (NCBI) | compare |
| b2741 | rpoS | +4.2 | 25.0 | RNA polymerase sigma factor (NCBI) | compare |
| b2904 | gcvH | +4.0 | 21.7 | glycine cleavage system protein H (NCBI) | compare |
| b2830 | nudH | +3.8 | 9.5 | dinucleoside polyphosphate hydrolase (NCBI) | compare |
| b1185 | dsbB | +3.8 | 11.6 | reoxidizes DsbA protein following formation of disulfide bond in P-ring of flagella. (VIMSS) | compare |
| b1831 | proQ | +3.7 | 13.7 | putative solute/DNA competence effector (NCBI) | compare |
| b3644 | yicC | +3.6 | 21.4 | hypothetical protein (NCBI) | compare |
| b3752 | rbsK | +3.5 | 11.6 | ribokinase (NCBI) | compare |
| b2664 | ygaE | +3.5 | 11.9 | putative transcriptional regulator (VIMSS) | compare |
| b2216 | rcsD | +3.4 | 13.1 | phosphotransfer intermediate protein in two-component regulatory system with RcsBC (NCBI) | compare |
| b2905 | gcvT | +3.4 | 16.4 | glycine cleavage system aminomethyltransferase T (NCBI) | compare |
| b0882 | clpA | +3.1 | 27.0 | ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity (NCBI) | compare |
| b1042 | csgA | +3.1 | 15.1 | cryptic curlin major subunit (NCBI) | compare |
| b1222 | narX | +3.1 | 5.0 | sensory histidine kinase in two-component regulatory system with NarL (NCBI) | compare |
| b2576 | srmB | +3.0 | 16.6 | ATP-dependent RNA helicase (NCBI) | compare |
| b3026 | qseC | +2.9 | 16.2 | sensory histidine kinase in two-component regulatory system with QseB (NCBI) | compare |
| b3181 | greA | +2.8 | 14.0 | transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) | compare |
| b3764 | yifE | +2.8 | 18.9 | hypothetical protein (NCBI) | compare |
| b4042 | dgkA | +2.8 | 9.4 | diacylglycerol kinase (NCBI) | compare |
| b1824 | yobF | +2.6 | 8.1 | hypothetical protein (NCBI) | compare |
| b4171 | miaA | +2.6 | 8.6 | tRNA delta(2)-isopentenylpyrophosphate transferase (NCBI) | compare |
| b4025 | pgi | +2.5 | 17.8 | glucose-6-phosphate isomerase (NCBI) | compare |
| b4450 | arcZ | +2.5 | 12.8 | sRNA antisense regulator of tpx and sdaA, Hfq-dependent (RefSeq) | compare |
| b1049 | mdoH | +2.5 | 17.3 | glucosyltransferase MdoH (NCBI) | compare |
| b3229 | sspA | +2.4 | 8.7 | stringent starvation protein A (NCBI) | compare |
| b4480 | hdfR | +2.4 | 17.0 | transcriptional regulator HdfR (NCBI) | compare |
| b3341 | rpsG | +2.4 | 3.3 | 30S ribosomal protein S7 (NCBI) | compare |
| b1039 | csgE | +2.3 | 13.4 | predicted transport protein (NCBI) | compare |
| b1048 | mdoG | +2.2 | 11.0 | glucan biosynthesis protein, periplasmic (NCBI) | compare |
| b0082 | mraW | +2.2 | 10.4 | S-adenosyl-methyltransferase (NCBI) | compare |
| b1823 | cspC | +2.2 | 5.0 | stress protein, member of the CspA-family (NCBI) | compare |
| b3934 | cytR | +2.2 | 16.2 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b0385 | yaiC | +2.2 | 15.8 | predicted diguanylate cyclase (NCBI) | compare |
| b3860 | dsbA | +2.2 | 13.4 | periplasmic protein disulfide isomerase I (NCBI) | compare |
| b3706 | trmE | +2.1 | 7.8 | tRNA modification GTPase (NCBI) | compare |
| b2314 | dedD | +2.1 | 6.1 | putative lipoprotein (VIMSS) | compare |
| b0450 | glnK | +2.1 | 2.2 | nitrogen assimilation regulatory protein for GlnL, GlnE, and AmtB (NCBI) | compare |
| b4202 | rpsR | +2.0 | 3.2 | 30S ribosomal protein S18 (NCBI) | compare |
| b3504 | yhiS | +2.0 | 2.0 | hypothetical protein (RefSeq) | compare |
| b0051 | ksgA | +1.9 | 9.1 | dimethyladenosine transferase (NCBI) | compare |
| b2808 | gcvA | +1.9 | 5.5 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b3423 | glpR | +1.8 | 13.0 | DNA-binding transcriptional repressor (NCBI) | compare |
| b0232 | yafN | +1.8 | 2.0 | predicted antitoxin of the YafO-YafN toxin-antitoxin system (NCBI) | compare |
| b1041 | csgB | +1.8 | 6.9 | curlin nucleator protein, minor subunit in curli complex (NCBI) | compare |
| b3871 | bipA | +1.8 | 12.2 | GTP-binding protein (NCBI) | compare |
| b0707 | ybgA | +1.7 | 7.0 | hypothetical protein (NCBI) | compare |
| b0088 | murD | +1.7 | 1.6 | UDP-N-acetylmuramoyl-L-alanyl-D-glutamatesynthetase (NCBI) | compare |
| b3454 | livF | +1.7 | 7.6 | ATP-binding component of leucine transport (VIMSS) | compare |
| b1144 | ymfJ | +1.7 | 1.8 | orf, hypothetical protein (VIMSS) | compare |
| b3183 | obgE | +1.7 | 3.0 | GTPase involved in cell partioning and DNA repair (NCBI) | compare |
| b3979 | thrT | +1.6 | 1.1 | tRNA-Thr (NCBI) | compare |
| b1542 | ydfI | +1.6 | 3.3 | predicted mannonate dehydrogenase (NCBI) | compare |
| b3741 | gidA | +1.6 | 7.8 | glucose-inhibited division protein A (NCBI) | compare |
| b2911 | ssrS | +1.5 | 3.7 | 6S regulatory RNA (NCBI) | compare |
| b3164 | pnp | +1.5 | 4.8 | polynucleotide phosphorylase/polyadenylase (RefSeq) | compare |
| b2501 | ppk | +1.5 | 10.4 | polyphosphate kinase (NCBI) | compare |
| b0889 | lrp | +1.5 | 4.1 | DNA-binding transcriptional dual regulator, leucine-binding (NCBI) | compare |
| b2947 | gshB | +1.5 | 5.0 | glutathione synthetase (NCBI) | compare |
| b2318 | truA | +1.5 | 5.1 | tRNA pseudouridine synthase A (NCBI) | compare |
| b1422 | ydcI | +1.5 | 6.3 | putative transcriptional regulator LYSR-type (VIMSS) | conserved |
| b1583 | ynfB | +1.4 | 1.3 | hypothetical protein (NCBI) | compare |
| b3929 | rraA | +1.4 | 9.3 | ribonuclease activity regulator protein RraA (NCBI) | compare |
| b1284 | yciT | +1.4 | 6.7 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b0382 | yaiB | +1.4 | 9.2 | hypothetical protein (NCBI) | compare |
| b1961 | dcm | +1.4 | 2.5 | DNA cytosine methylase (NCBI) | compare |
| b3156 | yhbS | +1.3 | 8.5 | predicted acyltransferase with acyl-CoA N-acyltransferase domain (NCBI) | compare |
| b4375 | prfC | +1.3 | 5.8 | peptide chain release factor 3 (NCBI) | compare |
| b1236 | galU | +1.3 | 6.9 | glucose-1-phosphate uridylyltransferase (NCBI) | compare |
| b2688 | gshA | +1.3 | 7.6 | glutamate--cysteine ligase (NCBI) | compare |
| b0610 | rnk | +1.3 | 5.1 | nucleoside diphosphate kinase regulator (NCBI) | compare |
| b0059 | hepA | +1.3 | 10.3 | ATP-dependent helicase HepA (NCBI) | compare |
| b0014 | dnaK | +1.3 | 2.1 | molecular chaperone DnaK (NCBI) | compare |
| b3102 | yqjG | +1.2 | 2.2 | predicted S-transferase (NCBI) | compare |
| b1830 | prc | +1.2 | 5.9 | carboxy-terminal protease for penicillin-binding protein 3 (NCBI) | compare |
| b4596 | yciZ | +1.2 | 2.8 | hypothetical protein (RefSeq) | compare |
| b3785 | wzzE | +1.2 | 9.2 | putative transport protein (VIMSS) | compare |
| b3199 | yrbK | +1.2 | 2.4 | hypothetical protein (NCBI) | compare |
| b1143 | ymfI | +1.2 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b3649 | rpoZ | +1.2 | 2.0 | DNA-directed RNA polymerase subunit omega (NCBI) | compare |
| b0881 | clpS | +1.2 | 2.8 | ATP-dependent Clp protease adaptor protein ClpS (NCBI) | compare |
| b3613 | yibP | +1.2 | 4.4 | putative membrane protein (VIMSS) | compare |
| b1095 | fabF | +1.2 | 7.1 | 3-oxoacyl-(acyl carrier protein) synthase (NCBI) | compare |
| b3933 | ftsN | +1.1 | 6.4 | essential cell division protein (NCBI) | compare |
| b0209 | yafD | +1.1 | 7.0 | hypothetical protein (NCBI) | compare |
| b1190 | dadX | +1.1 | 5.9 | alanine racemase (NCBI) | compare |
| b2136 | yohD | +1.1 | 2.1 | orf, hypothetical protein (VIMSS) | compare |
| b1553 | ydfP | +1.1 | 2.6 | Qin prophage; conserved protein (NCBI) | compare |
| b1150 | ymfR | +1.1 | 1.3 | e14 prophage; predicted protein (NCBI) | compare |
| b1960 | vsr | +1.1 | 2.4 | DNA mismatch endonuclease of very short patch repair (NCBI) | compare |
| b0926 | ycbK | +1.1 | 5.6 | hypothetical protein (NCBI) | compare |
| b2847 | yqeI | +1.1 | 1.9 | predicted transcriptional regulator (NCBI) | compare |
| b3146 | yraL | +1.1 | 5.7 | predicted methyltransferase (NCBI) | compare |
| b4071 | nrfB | +1.1 | 1.6 | formate-dependent nitrite reductase; a penta-haeme cytochrome c (VIMSS) | compare |
| b1346 | ydaQ | +1.1 | 2.1 | orf, hypothetical protein (VIMSS) | compare |
| b0955 | ycbZ | +1.0 | 6.4 | predicted peptidase (NCBI) | compare |
| b1891 | flhC | +1.0 | 3.7 | DNA-binding transcriptional dual regulator with FlhD (NCBI) | compare |
| b4568 | ytjA | +1.0 | 2.4 | predicted protein (RefSeq) | compare |
| b1942 | fliJ | +1.0 | 2.1 | flagellar biosynthesis chaperone (NCBI) | compare |
| b2829 | ptsP | +1.0 | 7.7 | fused PTS enzyme: PEP-protein phosphotransferase (enzyme I)/GAF domain containing protein (NCBI) | compare |
| b3133 | agaV | +1.0 | 1.4 | PTS system, cytoplasmic, N-acetylgalactosamine-specific IIB component 2 (EIIB-AGA) (VIMSS) | compare |
| b1743 | spy | +1.0 | 1.8 | envelope stress induced periplasmic protein (NCBI) | compare |
| b3442 | yhhZ | +1.0 | 0.4 | hypothetical protein (NCBI) | compare |
| b4155 | yjeA | +1.0 | 1.5 | putative lysyl-tRNA synthetase (VIMSS) | compare |
| b1332 | ynaJ | +1.0 | 0.6 | predicted inner membrane protein (NCBI) | compare |
| b2642 | yfjW | +1.0 | 0.8 | CP4-57 prophage; predicted inner membrane protein (NCBI) | compare |
| b2262 | menB | +1.0 | 1.1 | naphthoate synthase (NCBI) | compare |
| b2742 | nlpD | +1.0 | 4.3 | predicted outer membrane lipoprotein (NCBI) | compare |
| b4570 | lomR | +1.0 | 2.2 | no description | compare |
| b3836 | b3836 | +1.0 | 2.5 | orf, hypothetical protein (VIMSS) | compare |
| b3627 | rfaI | +1.0 | 6.2 | UDP-D-galactose:(glucosyl)lipopolysaccharide- alpha-1,3-D-galactosyltransferase (NCBI) | compare |
| b0542 | renD | +1.0 | 0.9 | orf, hypothetical protein (VIMSS) | compare |
| b2189 | proL | +1.0 | 2.0 | tRNA-Pro (NCBI) | compare |
| b3121 | yhaC | +1.0 | 0.5 | hypothetical protein (NCBI) | compare |
| b4462 | ygaQ | +0.9 | 3.1 | hypothetical protein (RefSeq) | compare |
| b1804 | rnd | +0.9 | 3.5 | ribonuclease D (NCBI) | compare |
| b2749 | ygbE | +0.9 | 4.0 | conserved inner membrane protein (NCBI) | compare |
| b1593 | b1593 | +0.9 | 2.1 | orf, hypothetical protein (VIMSS) | compare |
| b0234 | yafP | +0.9 | 2.4 | predicted acyltransferase with acyl-CoA N-acyltransferase domain (NCBI) | compare |
| b3620 | rfaF | +0.9 | 3.5 | ADP-heptose:LPS heptosyltransferase II (NCBI) | compare |
| b4325 | yjiC | +0.9 | 1.7 | orf, hypothetical protein (VIMSS) | compare |
| b0851 | nfsA | +0.9 | 1.5 | nitroreductase A, NADPH-dependent, FMN-dependent (NCBI) | compare |
| b3404 | envZ | +0.9 | 4.6 | osmolarity sensor protein (NCBI) | compare |
| b3842 | rfaH | +0.9 | 3.7 | transcriptional activator RfaH (NCBI) | compare |
| b4660 | yhiL | +0.9 | 0.5 | no description | compare |
| b4515 | ybgT | +0.9 | 1.7 | hypothetical protein (NCBI) | compare |
| b4646 | yrdE | +0.9 | 1.7 | no description | compare |
| b4493 | gapC | +0.9 | 1.5 | no description | compare |
| b4538 | yoeF | +0.9 | 1.8 | hypothetical protein (RefSeq) | compare |
| b0225 | yafQ | +0.9 | 2.9 | predicted toxin of the YafQ-DinJ toxin-antitoxin system (NCBI) | compare |
| b2939 | yqgB | +0.9 | 1.7 | predicted protein (RefSeq) | compare |
| b4260 | pepA | +0.9 | 5.5 | leucyl aminopeptidase (NCBI) | compare |
| b2954 | yggV | +0.8 | 1.3 | putative deoxyribonucleotide triphosphate pyrophosphatase (NCBI) | compare |
| b3625 | rfaY | +0.8 | 3.5 | lipopolysaccharide core biosynthesis protein (NCBI) | compare |
| b4163 | glyV | +0.8 | 0.9 | tRNA-Gly (NCBI) | compare |
| b1269 | rluB | +0.8 | 2.3 | 23S rRNA pseudouridylate synthase (NCBI) | compare |
| b1573 | ydfC | +0.8 | 0.9 | Qin prophage; predicted protein (RefSeq) | compare |
| b0339 | cynT | +0.8 | 2.6 | carbonic anhydrase (NCBI) | compare |
| b1725 | yniA | +0.8 | 2.0 | predicted phosphotransferase/kinase (NCBI) | compare |
| b1613 | manA | +0.8 | 1.7 | mannose-6-phosphate isomerase (VIMSS) | compare |
| b1306 | pspC | +0.8 | 1.7 | DNA-binding transcriptional activator (NCBI) | compare |
| b0406 | tgt | +0.8 | 3.2 | queuine tRNA-ribosyltransferase (NCBI) | compare |
| b0705 | ybfL | +0.8 | 1.1 | putative receptor protein (VIMSS) | compare |
| b1591 | b1591 | +0.8 | 1.2 | putative oxidoreductase component (VIMSS) | compare |
| b1669 | ydhT | +0.8 | 1.2 | hypothetical protein (NCBI) | compare |
| b1920 | fliY | +0.8 | 1.1 | cystine transporter subunit (NCBI) | compare |
| b1085 | b1085 | +0.8 | 1.1 | orf, hypothetical protein (VIMSS) | compare |
| b2123 | yehR | +0.8 | 1.1 | orf, hypothetical protein (VIMSS) | compare |
| b2752 | cysD | +0.8 | 3.9 | sulfate adenylyltransferase subunit 2 (NCBI) | compare |
| b0880 | cspD | +0.8 | 1.6 | cold shock protein homolog (NCBI) | compare |
| b1639 | ydhA | +0.8 | 3.1 | orf, hypothetical protein (VIMSS) | compare |
| b4603 | rseX | +0.8 | 0.6 | sRNA regulating ompA and ompC translation, with Hfq (RefSeq) | compare |
| b3107 | yhaL | +0.8 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b1286 | rnb | +0.8 | 2.1 | exoribonuclease II (NCBI) | compare |
| b2017 | yefM | +0.7 | 1.1 | orf, hypothetical protein (VIMSS) | compare |
| b0500 | ybbD | +0.7 | 0.3 | hypothetical protein (RefSeq) | compare |
| b0685 | ybfE | +0.7 | 2.5 | orf, hypothetical protein (VIMSS) | compare |
| b3106 | yhaK | +0.7 | 1.6 | predicted pirin-related protein (NCBI) | compare |
| b3238 | yhcN | +0.7 | 2.0 | orf, hypothetical protein (VIMSS) | compare |
| b4402 | yjjY | +0.7 | 0.9 | hypothetical protein (NCBI) | compare |
| b2948 | yqgE | +0.7 | 2.1 | orf, hypothetical protein (VIMSS) | compare |
| b2725 | hycA | +0.7 | 2.8 | regulator of the transcriptional regulator FhlA (NCBI) | compare |
| b0050 | apaG | +0.7 | 4.0 | hypothetical protein (NCBI) | compare |
| b0949 | uup | +0.7 | 4.9 | fused predicted transporter subunits of ABC superfamily: ATP-binding components (NCBI) | compare |
| b3120 | yhaB | +0.7 | 1.7 | orf, hypothetical protein (VIMSS) | compare |
| b2042 | galF | +0.7 | 4.0 | predicted subunit with GalU (NCBI) | compare |
| b0122 | yacC | +0.7 | 3.6 | orf, hypothetical protein (VIMSS) | compare |
| b3349 | slyD | +0.7 | 4.1 | FKBP-type peptidyl prolyl cis-trans isomerase (rotamase) (NCBI) | compare |
| b0787 | ybhM | +0.7 | 3.1 | conserved inner membrane protein (NCBI) | compare |
| b4543 | ypaA | +0.7 | 2.1 | predicted protein (NCBI) | compare |
| b0655 | gltI | +0.7 | 2.7 | glutamate and aspartate transporter subunit (NCBI) | compare |
| b2517 | yfgB | +0.7 | 3.9 | predicted enzyme (NCBI) | compare |
| b3052 | rfaE | +0.7 | 2.6 | fused heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase (NCBI) | compare |
| b0831 | yliC | +0.7 | 3.4 | predicted peptide transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b2229 | b2229 | +0.7 | 1.2 | orf, hypothetical protein (VIMSS) | compare |
| b3387 | dam | +0.7 | 5.0 | DNA adenine methylase (NCBI) | compare |
| b1370 | insH-5 | +0.7 | 1.8 | Rac prophage; IS5 transposase and trans-activator (NCBI) | compare |
| b4505 | insX | +0.7 | 1.4 | predicted IS protein (RefSeq) | compare |
| b0615 | citF | +0.7 | 1.8 | citrate lyase, citrate-ACP transferase (alpha) subunit (NCBI) | compare |
| b3740 | gidB | +0.7 | 3.8 | glucose-inhibited division protein B (NCBI) | compare |
| b4242 | mgtA | +0.7 | 4.1 | magnesium transporter (NCBI) | compare |
| b0388 | aroL | +0.7 | 2.2 | shikimate kinase II (NCBI) | compare |
| b2319 | usg | +0.7 | 1.7 | hypothetical protein (NCBI) | compare |
| b4443 | gcvB | +0.7 | 0.3 | GcvB sRNA gene divergent from gcvA (RefSeq) | compare |
| b3784 | rfe | +0.7 | 5.0 | UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase (NCBI) | compare |
| b1540 | ydfH | +0.7 | 1.1 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b3119 | tdcR | +0.7 | 1.2 | threonine dehydratase operon activator protein (VIMSS) | compare |
| b2567 | rnc | +0.7 | 0.7 | ribonuclease III (NCBI) | compare |
| b2876 | b2876 | +0.7 | 2.7 | orf, hypothetical protein (VIMSS) | compare |
| b0556 | rzpD | +0.7 | 2.2 | DLP12 prophage; predicted murein endopeptidase (NCBI) | compare |