| | gene | name | fitness | t score | description | |
|---|
| b2830 | nudH | +4.4 | 14.4 | dinucleoside polyphosphate hydrolase (NCBI) | compare |
| b2688 | gshA | +3.1 | 21.8 | glutamate--cysteine ligase (NCBI) | compare |
| b3934 | cytR | +3.0 | 27.0 | DNA-binding transcriptional dual regulator (NCBI) | conserved |
| b2101 | yegW | +3.0 | 19.7 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b1236 | galU | +2.9 | 19.7 | glucose-1-phosphate uridylyltransferase (NCBI) | compare |
| b2947 | gshB | +2.7 | 17.1 | glutathione synthetase (NCBI) | compare |
| b0840 | deoR | +2.6 | 19.4 | DNA-binding transcriptional repressor (NCBI) | compare |
| b2904 | gcvH | +2.5 | 15.4 | glycine cleavage system protein H (NCBI) | compare |
| b2903 | gcvP | +2.4 | 22.5 | glycine dehydrogenase (NCBI) | compare |
| b1190 | dadX | +2.4 | 15.4 | alanine racemase (NCBI) | compare |
| b1095 | fabF | +2.3 | 19.0 | 3-oxoacyl-(acyl carrier protein) synthase (NCBI) | compare |
| b3181 | greA | +2.2 | 11.0 | transcription elongation factor: cleaves 3' nucleotide of paused mRNA (VIMSS) | compare |
| b1824 | yobF | +2.1 | 3.2 | hypothetical protein (NCBI) | compare |
| b4260 | pepA | +1.7 | 15.6 | leucyl aminopeptidase (NCBI) | compare |
| b2829 | ptsP | +1.7 | 13.9 | fused PTS enzyme: PEP-protein phosphotransferase (enzyme I)/GAF domain containing protein (NCBI) | compare |
| b1663 | mdtK | +1.7 | 8.0 | multidrug efflux protein NorM (NCBI) | compare |
| b2808 | gcvA | +1.6 | 8.4 | DNA-binding transcriptional dual regulator (NCBI) | compare |
| b3706 | trmE | +1.6 | 6.3 | tRNA modification GTPase (NCBI) | compare |
| b0059 | hepA | +1.5 | 14.4 | ATP-dependent helicase HepA (NCBI) | compare |
| b3979 | thrT | +1.5 | 1.5 | tRNA-Thr (NCBI) | compare |
| b3620 | rfaF | +1.5 | 10.4 | ADP-heptose:LPS heptosyltransferase II (NCBI) | compare |
| b3863 | polA | +1.5 | 2.7 | DNA polymerase I (NCBI) | compare |
| b3199 | yrbK | +1.5 | 4.5 | hypothetical protein (NCBI) | compare |
| b0688 | pgm | +1.5 | 9.1 | phosphoglucomutase (NCBI) | compare |
| b3741 | gidA | +1.4 | 9.5 | glucose-inhibited division protein A (NCBI) | compare |
| b3164 | pnp | +1.4 | 4.7 | polynucleotide phosphorylase/polyadenylase (RefSeq) | compare |
| b3405 | ompR | +1.4 | 8.7 | osmolarity response regulator (NCBI) | compare |
| b1823 | cspC | +1.3 | 4.6 | stress protein, member of the CspA-family (NCBI) | compare |
| b0437 | clpP | +1.3 | 8.5 | ATP-dependent Clp protease proteolytic subunit (NCBI) | compare |
| b1233 | ychJ | +1.2 | 1.0 | hypothetical protein (NCBI) | compare |
| b3630 | rfaP | +1.2 | 10.1 | kinase that phosphorylates core heptose of lipopolysaccharide (NCBI) | compare |
| b4381 | deoC | +1.2 | 3.3 | deoxyribose-phosphate aldolase (NCBI) | compare |
| b3644 | yicC | +1.2 | 8.0 | hypothetical protein (NCBI) | compare |
| b1831 | proQ | +1.2 | 5.1 | putative solute/DNA competence effector (NCBI) | compare |
| b1341 | b1341 | +1.2 | 8.1 | orf, hypothetical protein (VIMSS) | compare |
| b0852 | rimK | +1.1 | 8.9 | ribosomal protein S6 modification protein (NCBI) | compare |
| b4647 | mokA | +1.1 | 1.5 | no description | compare |
| b3387 | dam | +1.1 | 9.7 | DNA adenine methylase (NCBI) | compare |
| b1038 | csgF | +1.1 | 4.7 | predicted transport protein (NCBI) | compare |
| b2189 | proL | +1.1 | 3.6 | tRNA-Pro (NCBI) | compare |
| b4391 | yjjK | +1.1 | 9.3 | fused predicted transporter subunits of ABC superfamily: ATP-binding components (NCBI) | compare |
| b3755 | yieP | +1.1 | 7.5 | predicted transcriptional regulator (NCBI) | compare |
| b1235 | rssB | +1.1 | 8.1 | response regulator of RpoS (NCBI) | compare |
| b4443 | gcvB | +1.1 | 0.6 | GcvB sRNA gene divergent from gcvA (RefSeq) | compare |
| b2127 | mlrA | +1.1 | 6.2 | DNA-binding transcriptional regulator (NCBI) | compare |
| b4450 | arcZ | +1.1 | 3.9 | sRNA antisense regulator of tpx and sdaA, Hfq-dependent (RefSeq) | compare |
| b3052 | rfaE | +1.1 | 6.0 | fused heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase (NCBI) | compare |
| b0556 | rzpD | +1.1 | 1.9 | DLP12 prophage; predicted murein endopeptidase (NCBI) | compare |
| b3929 | rraA | +1.1 | 7.8 | ribonuclease activity regulator protein RraA (NCBI) | compare |
| b2421 | cysM | +1.0 | 5.1 | cysteine synthase B (O-acetylserine sulfhydrolase B) (NCBI) | compare |
| b0222 | lpcA | +1.0 | 3.5 | phosphoheptose isomerase (NCBI) | compare |
| b1085 | b1085 | +1.0 | 3.4 | orf, hypothetical protein (VIMSS) | compare |
| b2642 | yfjW | +1.0 | 1.2 | CP4-57 prophage; predicted inner membrane protein (NCBI) | compare |
| b4380 | yjjI | +1.0 | 5.2 | hypothetical protein (NCBI) | compare |
| b2114 | metG | +1.0 | 2.3 | methionyl-tRNA synthetase (NCBI) | compare |
| b4558 | yifL | +1.0 | 2.9 | predicted lipoprotein (NCBI) | compare |
| b2518 | ndk | +1.0 | 3.1 | nucleoside diphosphate kinase (NCBI) | compare |
| b3842 | rfaH | +1.0 | 5.8 | transcriptional activator RfaH (NCBI) | compare |
| b4256 | yjgM | +0.9 | 7.9 | predicted acetyltransferase (NCBI) | compare |
| b4190 | yjfP | +0.9 | 7.4 | predicted hydrolase (NCBI) | compare |
| b1222 | narX | +0.9 | 5.7 | sensory histidine kinase in two-component regulatory system with NarL (NCBI) | compare |
| b4375 | prfC | +0.9 | 5.5 | peptide chain release factor 3 (NCBI) | compare |
| b0053 | surA | +0.9 | 5.4 | peptidyl-prolyl cis-trans isomerase (PPIase) (NCBI) | compare |
| b3404 | envZ | +0.9 | 5.8 | osmolarity sensor protein (NCBI) | compare |
| b4373 | rimI | +0.9 | 3.1 | ribosomal-protein-alanine N-acetyltransferase (NCBI) | compare |
| b1294 | sapA | +0.9 | 4.1 | predicted antimicrobial peptide transporter subunit (NCBI) | compare |
| b4402 | yjjY | +0.9 | 1.5 | hypothetical protein (NCBI) | compare |
| b3769 | ilvM | +0.9 | 2.9 | acetolactate synthase II, small subunit (NCBI) | compare |
| b2067 | yegE | +0.9 | 7.3 | predicted diguanylate cyclase, GGDEF domain signalling protein (NCBI) | compare |
| b2175 | spr | +0.9 | 4.4 | predicted peptidase, outer membrane lipoprotein (NCBI) | compare |
| b4702 | mgtL | +0.9 | 1.9 | regulatory leader peptide for mgtA (NCBI) | compare |
| b1349 | recT | +0.9 | 5.3 | Rac prophage; recombination and repair protein (NCBI) | compare |
| b1187 | fadR | +0.9 | 5.1 | fatty acid metabolism regulator (NCBI) | compare |
| b1284 | yciT | +0.9 | 5.7 | predicted DNA-binding transcriptional regulator (NCBI) | compare |
| b2042 | galF | +0.9 | 6.2 | predicted subunit with GalU (NCBI) | compare |
| b1037 | csgG | +0.9 | 6.3 | outer membrane lipoprotein (NCBI) | compare |
| b2218 | rcsC | +0.8 | 7.4 | hybrid sensory kinase in two-component regulatory system with RcsB and YojN (RefSeq) | compare |
| b4135 | yjdC | +0.8 | 5.3 | orf, hypothetical protein (VIMSS) | compare |
| b3977 | tyrU | +0.8 | 1.5 | tRNA-Tyr (NCBI) | compare |
| b1150 | ymfR | +0.8 | 1.4 | e14 prophage; predicted protein (NCBI) | compare |
| b0438 | clpX | +0.8 | 5.2 | ATP-dependent protease ATP-binding subunit (NCBI) | compare |
| b3631 | rfaG | +0.8 | 7.5 | glucosyltransferase I (NCBI) | compare |
| b1480 | sra | +0.8 | 1.4 | 30S ribosomal subunit protein S22 (NCBI) | compare |
| b1542 | ydfI | +0.8 | 2.1 | predicted mannonate dehydrogenase (NCBI) | compare |
| b0564 | appY | +0.8 | 1.2 | DLP12 prophage; DNA-binding transcriptional activator (NCBI) | compare |
| b2576 | srmB | +0.8 | 2.7 | ATP-dependent RNA helicase (NCBI) | compare |
| b4110 | yjcZ | +0.8 | 5.6 | orf, hypothetical protein (VIMSS) | compare |
| b1348 | lar | +0.8 | 3.2 | Rac prophage; restriction alleviation protein (NCBI) | compare |
| b0082 | mraW | +0.8 | 3.6 | S-adenosyl-methyltransferase (NCBI) | compare |
| b3621 | rfaC | +0.8 | 4.8 | ADP-heptose:LPS heptosyl transferase I (NCBI) | compare |
| b1042 | csgA | +0.8 | 4.6 | cryptic curlin major subunit (NCBI) | compare |
| b3350 | kefB | +0.8 | 7.0 | glutathione-regulated potassium-efflux system protein (NCBI) | compare |
| b3676 | yidH | +0.7 | 4.5 | conserved inner membrane protein (NCBI) | compare |
| b2303 | folX | +0.7 | 5.3 | D-erythro-7,8-dihydroneopterin triphosphate 2'-epimerase and dihydroneopterin aldolase (NCBI) | compare |
| b3351 | kefG | +0.7 | 3.8 | glutathione-regulated potassium-efflux system ancillary protein (NCBI) | compare |
| b1731 | cedA | +0.7 | 3.6 | cell division modulator (RefSeq) | compare |
| b1281 | pyrF | +0.7 | 3.0 | orotidine 5'-phosphate decarboxylase (NCBI) | compare |
| b1804 | rnd | +0.7 | 4.3 | ribonuclease D (NCBI) | compare |
| b1279 | yciS | +0.7 | 1.3 | conserved inner membrane protein (NCBI) | compare |
| b4048 | yjbM | +0.7 | 1.8 | hypothetical protein (NCBI) | compare |
| b1482 | osmC | +0.7 | 1.7 | osmotically inducible, stress-inducible membrane protein (NCBI) | compare |
| b1871 | yecP | +0.7 | 4.0 | predicted S-adenosyl-L-methionine-dependent methyltransferase (NCBI) | compare |
| b0949 | uup | +0.7 | 4.2 | fused predicted transporter subunits of ABC superfamily: ATP-binding components (NCBI) | compare |
| b1160 | elbA | +0.7 | 1.5 | hypothetical protein (NCBI) | compare |
| b1329 | b1329 | +0.7 | 4.7 | putative transport periplasmic protein (VIMSS) | compare |
| b1164 | ycgZ | +0.7 | 1.6 | hypothetical protein (NCBI) | compare |
| b3261 | fis | +0.7 | 1.9 | DNA-binding protein Fis (NCBI) | compare |
| b1606 | folM | +0.7 | 4.5 | short chain dehydrogenase (NCBI) | compare |
| b0051 | ksgA | +0.7 | 3.2 | dimethyladenosine transferase (NCBI) | compare |
| b2749 | ygbE | +0.7 | 4.4 | conserved inner membrane protein (NCBI) | compare |
| b0381 | ddlA | +0.7 | 3.9 | D-alanylalanine synthetase (NCBI) | compare |
| b0461 | ybaJ | +0.7 | 3.9 | hypothetical protein (NCBI) | compare |
| b0610 | rnk | +0.7 | 3.3 | nucleoside diphosphate kinase regulator (NCBI) | compare |
| b1273 | yciN | +0.7 | 1.6 | hypothetical protein (NCBI) | compare |
| b0685 | ybfE | +0.6 | 2.6 | orf, hypothetical protein (VIMSS) | compare |
| b0221 | yafH | +0.6 | 5.3 | putative acyl-CoA dehydrogenase (EC 1.3.99.-) (VIMSS) | compare |
| b2314 | dedD | +0.6 | 3.5 | putative lipoprotein (VIMSS) | compare |
| b4109 | yjdA | +0.6 | 5.6 | conserved protein with nucleoside triphosphate hydrolase domain (NCBI) | compare |
| b2911 | ssrS | +0.6 | 1.9 | 6S regulatory RNA (NCBI) | compare |
| b0339 | cynT | +0.6 | 3.3 | carbonic anhydrase (NCBI) | compare |
| b2946 | yggJ | +0.6 | 3.3 | orf, hypothetical protein (VIMSS) | compare |
| b4655 | ythA | +0.6 | 1.1 | expressed protein (RefSeq) | compare |
| b4596 | yciZ | +0.6 | 1.6 | hypothetical protein (RefSeq) | compare |
| b0955 | ycbZ | +0.6 | 4.9 | predicted peptidase (NCBI) | compare |
| b4409 | blr | +0.6 | 3.9 | beta-lactam resistance membrane protein (NCBI) | compare |
| b1686 | ydiI | +0.6 | 2.0 | hypothetical protein (NCBI) | compare |
| b2516 | yfgA | +0.6 | 4.0 | hypothetical protein (NCBI) | compare |
| b4653 | yicT | +0.6 | 1.2 | no description | compare |
| b4570 | lomR | +0.6 | 1.9 | no description | compare |
| b1144 | ymfJ | +0.6 | 1.5 | orf, hypothetical protein (VIMSS) | compare |
| b1134 | ymfB | +0.6 | 1.8 | bifunctional thiamin pyrimidine pyrophosphate hydrolase/ thiamin pyrophosphate hydrolase (NCBI) | compare |
| b0746 | valZ | +0.6 | 2.5 | tRNA-Val (NCBI) | compare |
| b3250 | mreC | +0.6 | 1.1 | cell wall structural complex MreBCD transmembrane component MreC (NCBI) | compare |
| b3206 | npr | +0.6 | 4.1 | phosphohistidinoprotein-hexose phosphotransferase component of N-regulated PTS system (Npr) (NCBI) | compare |
| b4533 | ynfO | +0.6 | 1.2 | Qin prophage; predicted protein (NCBI) | compare |
| b3197 | kdsD | +0.6 | 3.2 | D-arabinose 5-phosphate isomerase (NCBI) | compare |
| b4141 | yjeH | +0.6 | 4.9 | predicted transporter (NCBI) | compare |
| b2521 | sseA | +0.6 | 3.8 | putative thiosulfate sulfurtransferase (VIMSS) | compare |
| b1040 | csgD | +0.6 | 1.7 | DNA-binding transcriptional activator in two-component regulatory system (NCBI) | compare |
| b2258 | b2258 | +0.6 | 1.1 | putative transport/receptor protein (VIMSS) | compare |
| b1041 | csgB | +0.6 | 2.1 | curlin nucleator protein, minor subunit in curli complex (NCBI) | compare |
| b2419 | yfeK | +0.6 | 2.2 | hypothetical protein (NCBI) | compare |
| b2513 | yfgM | +0.6 | 1.4 | hypothetical protein (NCBI) | compare |
| b1090 | plsX | +0.6 | 3.7 | glycerolphosphate auxotrophy in plsB background (VIMSS) | compare |
| b0310 | ykgH | +0.6 | 1.5 | predicted inner membrane protein (NCBI) | compare |
| b4390 | nadR | +0.6 | 4.4 | probable nadAB transcriptional regulator (VIMSS) | compare |
| b2948 | yqgE | +0.5 | 2.7 | orf, hypothetical protein (VIMSS) | compare |
| b3466 | yhhL | +0.5 | 3.0 | conserved inner membrane protein (NCBI) | compare |
| b0545 | ybcL | +0.5 | 4.0 | DLP12 prophage; predicted kinase inhibitor (NCBI) | compare |
| b4504 | ykfH | +0.5 | 3.0 | hypothetical protein (NCBI) | compare |
| b4042 | dgkA | +0.5 | 1.8 | diacylglycerol kinase (NCBI) | compare |
| b4522 | yciX_1 | +0.5 | 1.0 | hypothetical protein (NCBI) | compare |
| b2111 | yehD | +0.5 | 2.2 | predicted fimbrial-like adhesin protein (NCBI) | compare |
| b1423 | ydcJ | +0.5 | 2.9 | hypothetical protein (NCBI) | compare |
| b0779 | uvrB | +0.5 | 4.2 | excinuclease ABC subunit B (NCBI) | compare |
| b2183 | rsuA | +0.5 | 2.6 | 16S rRNA pseudouridylate 516 synthase (NCBI) | compare |
| b1920 | fliY | +0.5 | 1.7 | cystine transporter subunit (NCBI) | compare |
| b4028 | yjbG | +0.5 | 1.5 | hypothetical protein (NCBI) | compare |
| b2951 | yggS | +0.5 | 2.6 | predicted enzyme (NCBI) | compare |
| b1159 | mcrA | +0.5 | 1.1 | e14 prophage; 5-methylcytosine-specific restriction endonuclease B (NCBI) | compare |
| b4382 | deoA | +0.5 | 1.7 | thymidine phosphorylase (NCBI) | compare |
| b4058 | uvrA | +0.5 | 4.3 | excinuclease ABC subunit A (NCBI) | compare |
| b0340 | cynS | +0.5 | 2.8 | cyanate hydratase (NCBI) | compare |
| b2847 | yqeI | +0.5 | 0.9 | predicted transcriptional regulator (NCBI) | compare |
| b0197 | metQ | +0.5 | 3.8 | DL-methionine transporter subunit (NCBI) | compare |
| b0926 | ycbK | +0.5 | 2.5 | hypothetical protein (NCBI) | compare |
| b2058 | wcaB | +0.5 | 1.0 | predicted acyl transferase (NCBI) | compare |
| b1558 | cspF | +0.5 | 1.2 | Qin prophage; cold shock protein (NCBI) | compare |
| b3026 | qseC | +0.5 | 2.5 | sensory histidine kinase in two-component regulatory system with QseB (NCBI) | compare |
| b2143 | cdd | +0.5 | 2.5 | cytidine deaminase (NCBI) | compare |
| b2052 | fcl | +0.5 | 1.3 | bifunctional GDP-fucose synthetase: GDP-4-dehydro-6-deoxy-D-mannose epimerase/ GDP-4-dehydro-6-L-deoxygalactose reductase (NCBI) | compare |
| b0998 | torD | +0.5 | 1.0 | chaperone protein TorD (NCBI) | compare |
| b2538 | hcaE | +0.5 | 1.4 | 3-phenylpropionate dioxygenase, large (alpha) subunit (NCBI) | compare |
| b2572 | rseA | +0.5 | 1.8 | anti-sigma factor (NCBI) | compare |
| b1673 | ydhV | +0.5 | 2.9 | predicted oxidoreductase (NCBI) | compare |
| b4505 | insX | +0.5 | 1.2 | predicted IS protein (RefSeq) | compare |
| b3632 | rfaQ | +0.5 | 4.2 | lipopolysaccharide core biosynthesis protein (NCBI) | compare |
| b2216 | rcsD | +0.5 | 3.6 | phosphotransfer intermediate protein in two-component regulatory system with RcsBC (NCBI) | compare |
| b1189 | dadA | +0.5 | 2.8 | D-amino acid dehydrogenase (quinone) DadA (EC 1.4.5.1) (from data) | compare |
| b4171 | miaA | +0.5 | 1.8 | tRNA delta(2)-isopentenylpyrophosphate transferase (NCBI) | compare |
| b0965 | b0965 | +0.5 | 1.5 | orf, hypothetical protein (VIMSS) | compare |
| b1397 | paaJ | +0.5 | 3.2 | acetyl-CoA acetyltransferase (NCBI) | compare |
| b4246 | pyrL | +0.5 | 2.2 | pyrBI operon leader peptide (NCBI) | compare |
| b2517 | yfgB | +0.5 | 3.0 | predicted enzyme (NCBI) | compare |
| b4461 | yfjD | +0.5 | 3.4 | predicted inner membrane protein (RefSeq) | compare |
| b1847 | yebF | +0.5 | 0.6 | predicted protein (RefSeq) | compare |
| b3787 | rffD | +0.5 | 3.6 | UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase (NCBI) | compare |
| b3753 | rbsR | +0.4 | 3.0 | DNA-binding transcriptional repressor of ribose metabolism (NCBI) | compare |
| b4174 | hflK | +0.4 | 2.9 | modulator for HflB protease specific for phage lambda cII repressor (NCBI) | compare |
| b3156 | yhbS | +0.4 | 3.4 | predicted acyltransferase with acyl-CoA N-acyltransferase domain (NCBI) | compare |
| b3784 | rfe | +0.4 | 3.6 | UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase (NCBI) | compare |
| b4325 | yjiC | +0.4 | 1.1 | orf, hypothetical protein (VIMSS) | compare |
| b3871 | bipA | +0.4 | 3.7 | GTP-binding protein (NCBI) | compare |
| b1642 | slyA | +0.4 | 0.9 | transcriptional regulator for cryptic hemolysin (VIMSS) | compare |
| b4066 | yjcF | +0.4 | 0.5 | hypothetical protein (NCBI) | compare |
| b0542 | renD | +0.4 | 0.9 | orf, hypothetical protein (VIMSS) | compare |
| b0856 | potH | +0.4 | 2.9 | putrescine transporter subunit: membrane component of ABC superfamily (NCBI) | compare |
| b1961 | dcm | +0.4 | 0.9 | DNA cytosine methylase (NCBI) | compare |
| b2587 | kgtP | +0.4 | 2.7 | alpha-ketoglutarate transporter (NCBI) | compare |
| b0979 | appB | +0.4 | 2.0 | cytochrome bd-II oxidase, subunit II (NCBI) | compare |